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Gene C1orf50TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
141 supporting clones for gene C1orf50 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA823167 pericardium .a 1 to 563 2 to 565   tiling clone, to resequence, capped   564/564
(100 %)
5 diff
(99.2 %id)
DB327874 pericardium .a 1281 to 1796 518 to 1   tiling clone, to resequence,   518/518
(100 %)
3 diff
(99.5 %id)
BQ062511 lymph, lymphoma, cell line .b 1 to 746 1 to 746 R16K G24S tiling clone, AAA   746/746
(100 %)
5 diff
(99.4 %id)
CD369015 Alveolar Macrophage, lung .b 2 to 746 757 to 19 E2G D3R A4P A6P P7G ... AAA   739/739
(100 %)
6 diff
(99.2 %id)
BU553325 ovary, teratocarcinoma, cell line .b 10 to 746 1 to 737 exact tiling clone, AAA   737/737
(100 %)
0 diff
(100 %id)
TI_1948084459   .b 94 to 615 656 to 130       527/1121
(47 %)
25 diff
(97.8 %id)
TI_1948083916   .b 95 to 615 652 to 131       522/1196
(43 %)
15 diff
(98.8 %id)
TI_1948084186   .b 143 to 615 602 to 130       473/1183
(39 %)
9 diff
(99.3 %id)
AI569708 anaplastic oligodendroglioma, brain .b 182 to 747 566 to 1       566/566
(100 %)
0 diff
(100 %id)
CB046050 2 pooled tumors (clear cell type), Kidney .b 199 to 746 576 to 29   AAA   548/548
(100 %)
2 diff
(99.7 %id)
NM_024097.2   .c 1 to 1019 2 to 1020 exact RefSeq,   1020/1020
(100 %)
1 diff
(100.0 %id)
BI226443 Burkitt lymphoma, lymph .c 23 to 231 1 to 209   tiling clone,   209/209
(100 %)
2 diff
(99.1 %id)
BC001508 Lymph, Burkitt lymphoma .c 24 to 1011 1 to 988 T178M tiling clone, available from MGC, AAA   988/988
(100 %)
1 diff
(99.9 %id)
BC001711 Lymph, Burkitt lymphoma .c 24 to 1011 1 to 988   available from MGC, AAA   988/988
(100 %)
1 diff
(99.9 %id)
AL559261 T cells from T cell leukemia .c 34 to 379 1 to 346   fully sequenced,   346/346
(100 %)
4 diff
(98.9 %id)
BX956525   .c 42 to 348 1 to 306       306/306
(100 %)
1 diff
(99.7 %id)
AW732698 Burkitt lymphoma, lymph .c 42 to 624 1 to 583       583/583
(100 %)
2 diff
(99.7 %id)
BE267902 Burkitt lymphoma, lymph .c 43 to 212 1 to 171       169/171
(98 %)
2 diff
(98.9 %id)
BE513409 Burkitt lymphoma, lymph .c 43 to 211 1 to 169       169/169
(100 %)
0 diff
(100 %id)
BE296338 muscle, rhabdomyosarcoma .c 45 to 211 1 to 167       167/167
(100 %)
3 diff
(98.3 %id)
BQ059599 lymph, lymphoma, cell line .c 51 to 796 1 to 751 exact AAA   751/751
(100 %)
8 diff
(99.0 %id)
CN256668 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .c 52 to 729 1 to 680 exact     680/680
(100 %)
2 diff
(99.8 %id)
BM505045 Pancreas, Purified pancreatic islet .c 53 to 666 10 to 623 exact     614/623
(98 %)
6 diff
(99.1 %id)
BQ064229 lymph, lymphoma, cell line .c 53 to 754 1 to 717 S174N M175L S181N L186P P187A ...     717/1190
(60 %)
26 diff
(97.9 %id)
BQ642209 lymph, lymphoma, cell line .c 53 to 797 1 to 745 exact AAA   745/745
(100 %)
2 diff
(99.8 %id)
CN256665 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .c 58 to 673 1 to 616 T178M     616/617
(99 %)
2 diff
(99.7 %id)
CV025949 mixed .c 67 to 665 1 to 599       599/651
(92 %)
1 diff
(99.9 %id)
BQ071711 brain, neuroblastoma, cell line .c 73 to 1009 1 to 948       948/1028
(92 %)
22 diff
(97.9 %id)
BM129836 Islets of Langerhans, Pancreas .c 76 to 648 1 to 573       573/573
(100 %)
0 diff
(100 %id)
BF970372 adrenal cortex carcinoma, cell line, adrenal gland .c 147 to 835 1 to 690       690/697
(98 %)
4 diff
(99.5 %id)
CN256667 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .c 158 to 781 1 to 625       625/625
(100 %)
1 diff
(99.9 %id)
AW173293 pooled .c 188 to 799 612 to 1       612/613
(99 %)
2 diff
(99.7 %id)
CK822498 Pancreas, Purified pancreatic islet .c 190 to 781 611 to 20   AAA Submitted on the opposite strand 592/592
(100 %)
0 diff
(100 %id)
BU624163 cell lines, Enchondroma .c 203 to 796 612 to 19   AAA   594/594
(100 %)
1 diff
(99.9 %id)
BU532787 mixed (pool of 40 RNAs) .c 218 to 796 1 to 581       581/836
(69 %)
3 diff
(99.7 %id)
AI735682 aorta .c 229 to 799 571 to 1       571/571
(100 %)
2 diff
(99.7 %id)
AW449133   .c 238 to 796 576 to 18   AAA   559/559
(100 %)
1 diff
(99.9 %id)
AL580912 T cells from T cell leukemia .c 318 to 763 448 to 1   fully sequenced,   446/446
(100 %)
4 diff
(99.2 %id)
AI139596 placenta .c 384 to 849 486 to 21   AAA   466/468
(99 %)
3 diff
(99.4 %id)
BF108959 pooled .c 436 to 1007 575 to 4       572/575
(99 %)
2 diff
(99.7 %id)
AI333445 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 444 to 857 417 to 4   tiling clone,   414/417
(99 %)
0 diff
(100 %id)
AW273909 pooled .c 783 to 1008 229 to 4       226/229
(98 %)
0 diff
(100 %id)
AA741374 germinal center B cell .c 884 to 1013 155 to 26   AAA   130/130
(100 %)
0 diff
(100 %id)
TI_154030743   .d 1 to 689 756 to 71 S7P W8G V9C V11R A12R ... tiling clone, AAA   686/805
(85 %)
4 diff
(99.6 %id)
TI_44343940   .e 1 to 832 83 to 913       831/916
(90 %)
16 diff
(98.3 %id)
BI667825 brain, hypothalamus .e 3 to 832 1 to 829   tiling clone,   829/832
(99 %)
10 diff
(98.8 %id)
AW844035 colon_normal .e 155 to 542 1 to 392       392/392
(100 %)
26 diff
(93.4 %id)
DN831934 pooled .e 528 to 752 233 to 9     Submitted on the opposite strand 225/233
(96 %)
0 diff
(100 %id)
DR731382 pooled .e 538 to 1008 471 to 1     Submitted on the opposite strand 471/471
(100 %)
2 diff
(99.6 %id)
TI_813709443   .e 561 to 872 7 to 318       312/725
(43 %)
8 diff
(98.9 %id)
TI_891526379   .e 564 to 1054 12 to 500   tiling clone,   489/816
(59 %)
8 diff
(99.1 %id)
DR007889 pooled .e 585 to 669 1 to 85       85/85
(100 %)
2 diff
(97.7 %id)
DN831935 pooled .e 606 to 865 1 to 260       260/260
(100 %)
2 diff
(99.3 %id)
DR731381 pooled .e 607 to 1050 1 to 444   tiling clone,   444/444
(100 %)
3 diff
(99.4 %id)
DB484718 hypothalamus .f 1 to 455 1 to 455   tiling clone,   455/455
(100 %)
2 diff
(99.6 %id)
BI598133 brain, hypothalamus .f 3 to 643 8 to 656 G120W A121C Y122L K123Q L124T ... AAA   649/656
(98 %)
17 diff
(97.5 %id)
TI_45216717   .f 3 to 643 127 to 775 G120W A121C Y122L K123Q L124T ... tiling clone, AAA   649/775
(83 %)
17 diff
(97.9 %id)
TI_153963424   .f 9 to 751 78 to 815       738/951
(77 %)
10 diff
(99.0 %id)
BF206220 brain, neuroblastoma .f 10 to 854 1 to 851   AAA   851/851
(100 %)
35 diff
(95.9 %id)
BM702424 eye, optic nerve .f 10 to 599 1 to 590       590/590
(100 %)
0 diff
(100 %id)
BP420980 small intestine .f 24 to 558 1 to 536     Submitted on the opposite strand 536/536
(100 %)
1 diff
(99.9 %id)
BE259542 brain, neuroblastoma .f 30 to 854 1 to 833       833/833
(100 %)
20 diff
(97.6 %id)
BM666729 eye, human retina .f 88 to 754 685 to 19   tiling clone, AAA   667/667
(100 %)
0 diff
(100 %id)
AA255559 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .g-u 1 to 300 1 to 299   tiling clone, fully sequenced, Submitted on the opposite strand 299/299
(100 %)
4 diff
(98.7 %id)
AK095635 brain .g-u 160 to 2247 1 to 2091   tiling clone, available from FLJ,   2091/2091
(100 %)
2 diff
(100.0 %id)
DA507538 brain .g-u 161 to 728 2 to 572   capped   571/571
(100 %)
3 diff
(99.5 %id)
AA255574 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .g-u 270 to 541 276 to 4   fully sequenced, Submitted on the opposite strand 273/276
(98 %)
6 diff
(97.9 %id)
BM544381 brain, hippocampus .g-u 1337 to 2267 12 to 949   tiling clone,   938/1043
(89 %)
6 diff
(99.5 %id)
DB316161 brain .g-u 1723 to 2247 527 to 1       527/527
(100 %)
2 diff
(99.7 %id)
BX107267 parathyroid gland, parathyroid tumor .h 1 to 479 1 to 479   tiling clone,   479/479
(100 %)
4 diff
(99.2 %id)
W37846 parathyroid gland, parathyroid tumor .h 1 to 400 1 to 405   fully sequenced,   405/405
(100 %)
12 diff
(97.1 %id)
W37847 parathyroid gland, parathyroid tumor .h 339 to 688 356 to 4   tiling clone, fully sequenced,   355/358
(99 %)
3 diff
(99.2 %id)
BU616601 Cell Line, Chondrosarcoma .h 528 to 1216 705 to 17   tiling clone, AAA   689/689
(100 %)
0 diff
(100 %id)
BI006272 kidney_tumor .h 882 to 1271 390 to 1   tiling clone,   390/390
(100 %)
0 diff
(100 %id)
BX280809 brain, hypothalamus .i 1 to 425 453 to 29 L56X tiling clone, AAA Submitted on the opposite strand 425/425
(100 %)
0 diff
(100 %id)
CN256666 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .j 1 to 655 1 to 655 exact tiling clone,   655/655
(100 %)
1 diff
(99.9 %id)
BG104815 adrenal cortex carcinoma, cell line, adrenal gland .k-u 1 to 776 1 to 775   tiling clone,   775/801
(96 %)
33 diff
(95.9 %id)
AA321170 brain .k-u 76 to 368 1 to 293   tiling clone,   293/293
(100 %)
0 diff
(100 %id)
BQ722997 sympathetic trunk .k-u 546 to 1363 1 to 823   tiling clone,   823/880
(93 %)
11 diff
(98.8 %id)
BX112127 melanocyte .k-u 744 to 1516 1 to 774   tiling clone,   774/774
(100 %)
5 diff
(99.4 %id)
BQ337617 marrow .k-u 796 to 1226 432 to 1       432/432
(100 %)
11 diff
(97.5 %id)
AA017077 eye, retina .k-u 819 to 1136 1 to 328   to resequence,   328/382
(85 %)
16 diff
(95.9 %id)
AA017084 eye, retina .k-u 819 to 1125 1 to 314       314/325
(96 %)
10 diff
(97.0 %id)
AL601115   .k-u 1307 to 1713 1 to 409   tiling clone,   409/412
(99 %)
4 diff
(99.1 %id)
BU617660 Bone, Subchondral Bone .k-u 2648 to 3282 653 to 19 exact tiling clone, AAA   635/635
(100 %)
2 diff
(99.7 %id)
AA722442 heart .k-u 2890 to 3191 21 to 322     Submitted on the opposite strand 302/322
(93 %)
6 diff
(98.2 %id)
AA457526.
matches multiple genes
  .k-u 2958 to 3400 443 to 1   tiling clone, also hits gene smarubo 443/443
(100 %)
0 diff
(100 %id)
AA767848 germinal center B cell .k-u 3049 to 3372 367 to 44   AAA   324/324
(100 %)
0 diff
(100 %id)
AA017078 eye, retina .k-u 3075 to 3372 344 to 42   to resequence, AAA   303/325
(93 %)
9 diff
(97.3 %id)
AI468300 Prostate .k-u 3125 to 3374 255 to 6       250/255
(98 %)
0 diff
(100 %id)
DA684965   .l 1 to 552 2 to 553 exact tiling clone, capped   552/552
(100 %)
2 diff
(99.7 %id)
DB178674 kidney, tumor tissue .m-u 1 to 555 2 to 556   tiling clone, capped   555/555
(100 %)
3 diff
(99.5 %id)
DA648851   .m-u 2 to 369 2 to 369   to resequence, capped   368/368
(100 %)
0 diff
(100 %id)
BE883025 leiomyosarcoma, uterus .m-u 37 to 675 1 to 651   tiling clone,   651/695
(93 %)
24 diff
(96.6 %id)
DA320226 hippocampus .m-u 392 to 935 2 to 546   tiling clone, capped   545/545
(100 %)
1 diff
(99.9 %id)
DA192530 amygdala .m-u 521 to 1115 2 to 596   capped   595/595
(100 %)
0 diff
(100 %id)
BF993772 placenta_normal .m-u 541 to 990 1 to 449       449/449
(100 %)
14 diff
(96.9 %id)
CD676027 eye, lens .m-u 715 to 1350 1 to 636   tiling clone,   636/636
(100 %)
0 diff
(100 %id)
DA498519 brain .m-u 728 to 1294 2 to 569   capped   568/568
(100 %)
3 diff
(99.5 %id)
AA352358   .m-u 926 to 1311 1 to 388       388/389
(99 %)
7 diff
(98.3 %id)
CD706658 normal nasopharynx .m-u 1284 to 1416 22 to 155   tiling clone,   134/158
(84 %)
4 diff
(97.5 %id)
DB321631   .m-u 1944 to 2495 550 to 1 exact tiling clone, to resequence,   550/550
(100 %)
2 diff
(99.7 %id)
DA511870 brain .n 1 to 559 2 to 561 R29X G31R S32E Q33S Q34A ... tiling clone, fully sequenced, capped   560/560
(100 %)
1 diff
(99.9 %id)
TI_59392890   .n 43 to 836 49 to 839 Q25H     791/791
(100 %)
9 diff
(98.9 %id)
BM014824 breast, mammary adenocarcinoma, cell line .n 45 to 836 1 to 789 Q25H tiling clone,   789/789
(100 %)
9 diff
(98.9 %id)
BX339181 Placenta Cot 25-normalized .n 282 to 947 277 to 932 V13C L14P E15*     913/974
(93 %)
51 diff
(94.8 %id)
DB316349 brain .n 540 to 1127 588 to 1   tiling clone, fully sequenced,   588/588
(100 %)
0 diff
(100 %id)
AI857925 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .n 667 to 1127 461 to 1       461/461
(100 %)
2 diff
(99.6 %id)
BE464824 2 pooled Wilms' tumors, one primary and onemetastatic to brain, Kidney .n 670 to 1131 462 to 1       462/462
(100 %)
1 diff
(99.8 %id)
AA705722 liver and spleen .n 789 to 1170 401 to 18       384/401
(95 %)
0 diff
(100 %id)
AI800498 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .n 824 to 1248 429 to 1       429/429
(100 %)
2 diff
(99.6 %id)
N52298 liver and spleen .n 913 to 1382 1 to 478   tiling clone, Submitted on the opposite strand 478/481
(99 %)
14 diff
(97.1 %id)
T99757 liver and spleen .n 980 to 1290 325 to 6   tiling clone,   320/382
(83 %)
0 diff
(100 %id)
TI_149310976   .n 1184 to 1987 872 to 79   tiling clone, AAA   794/900
(88 %)
59 diff
(93.5 %id)
BF978360 melanotic melanoma, high MDR, skin .n 1367 to 2011 1 to 642   tiling clone,   642/642
(100 %)
6 diff
(99.1 %id)
BU689139 lung .n 1451 to 1987 555 to 19   AAA   537/537
(100 %)
1 diff
(99.9 %id)
F21027 pectoral muscle (after mastectomy) .n 1531 to 1987 1 to 469   AAA   469/469
(100 %)
18 diff
(96.2 %id)
DA781336 brain .n 1908 to 2470 2 to 565   tiling clone, capped   564/564
(100 %)
1 diff
(99.9 %id)
AK299874 brain .o 1 to 1028 1 to 1028 exact tiling clone,   1028/1028
(100 %)
0 diff
(100 %id)
DC377545 brain .o 1 to 574 1 to 574       574/574
(100 %)
0 diff
(100 %id)
TI_1948084735   .o 341 to 740 529 to 127       401/1061
(37 %)
8 diff
(99.3 %id)
AI371065 lung .o 373 to 870 498 to 1       498/498
(100 %)
0 diff
(100 %id)
AA976347 2 pooled tumors (clear cell type), Kidney .o 403 to 523 121 to 1       121/121
(100 %)
0 diff
(100 %id)
DB571434 hypothalamus .o 410 to 870 1 to 461     Submitted on the opposite strand 461/462
(99 %)
1 diff
(99.8 %id)
AA844448 parathyroid gland, parathyroid tumor .o 424 to 874 455 to 6       454/455
(99 %)
0 diff
(100 %id)
AI301529 2 pooled tumors (clear cell type), Kidney .o 439 to 874 437 to 2       436/437
(99 %)
0 diff
(100 %id)
AW843842 colon_normal .o 441 to 857 417 to 1       417/417
(100 %)
0 diff
(100 %id)
BF953958 nervous_normal .o 442 to 865 430 to 8       423/430
(98 %)
0 diff
(100 %id)
BM504723 Pancreas, Purified pancreatic islet .o 442 to 855 414 to 1       414/420
(98 %)
4 diff
(99.1 %id)
W42541 senescent fibroblast .o 461 to 871 411 to 1       411/411
(100 %)
2 diff
(99.6 %id)
AA907820 pooled .o 481 to 864 384 to 1       384/384
(100 %)
2 diff
(99.5 %id)
AW903163 nervous_normal .o 512 to 836 328 to 2       327/328
(99 %)
0 diff
(100 %id)
AI565626 anaplastic oligodendroglioma, brain .o 515 to 874 360 to 1       360/360
(100 %)
0 diff
(100 %id)
AI860929 anaplastic oligodendroglioma, brain .o 515 to 874 361 to 1       361/361
(100 %)
1 diff
(99.8 %id)
AI244589 Kidney .o 524 to 871 346 to 1       346/346
(100 %)
7 diff
(98.0 %id)
AA860346   .o 554 to 874 323 to 3       321/323
(99 %)
0 diff
(100 %id)
AI215456 pooled .o 554 to 874 326 to 3       324/329
(98 %)
0 diff
(100 %id)
BF091635 testis_normal .o 594 to 876 302 to 18       285/302
(94 %)
0 diff
(100 %id)
AI245142 Kidney .o 680 to 871 191 to 1       191/192
(99 %)
1 diff
(99.5 %id)
BF963865 nervous_normal .o 706 to 857 15 to 164       150/164
(91 %)
6 diff
(96.4 %id)
R07975 liver and spleen .p-u 1 to 291 1 to 300 T34A tiling clone,   300/333
(90 %)
14 diff
(95.8 %id)
R07976 liver and spleen .p-u 624 to 766 149 to 7   tiling clone,   143/151
(94 %)
0 diff
(100 %id)
BE149437 head_neck .q 1 to 497 32 to 527 V7L G8E G9E E10R D11I ... tiling clone,   496/534
(92 %)
7 diff
(98.7 %id)
BQ338645 nervous_normal .r 1 to 178 179 to 1 R24Q Q25P L26A Q27A A28G ... tiling clone,   179/179
(100 %)
1 diff
(99.5 %id)
N27961 melanocyte Gene C1orf50, variant not shown         This clone was ignored    
N40727 melanocyte Gene C1orf50, variant not shown         This clone was ignored    
AI240291 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus Gene C1orf50, variant not shown         This clone was ignored    
AI307150 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus Gene C1orf50, variant not shown         This clone was ignored    
AI825105 pooled germ cell tumors Gene C1orf50, variant not shown         Suspected internal deletion, this clone was ignored    
AW003571 pooled germ cell tumors Gene C1orf50, variant not shown         Suspected internal deletion, this clone was ignored    
AW170073 cervix, tumor Gene C1orf50, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g-u, .h, .i, .j, .k-u, .l, .m-u, .n, .o, .p-u, .q, .r Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C