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Gene ZNF790TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
75 supporting clones for gene ZNF790 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DC327237 caudate nucleus .a -8 to 517 1 to 526       526/526
(100 %)
0 diff
(100 %id)
BU941082 mixed (pool of 40 RNAs) .a 1 to 785 6 to 795   tiling clone,   795/804
(98 %)
15 diff
(98.2 %id)
DC350752 brain .a 1 to 567 5 to 571       571/571
(100 %)
0 diff
(100 %id)
DC351358 brain .a 1 to 570 5 to 575       575/576
(99 %)
3 diff
(99.5 %id)
DC428010   .a 1 to 542 5 to 546       546/546
(100 %)
0 diff
(100 %id)
DC374687 brain .a 1 to 574 5 to 578       578/578
(100 %)
1 diff
(99.9 %id)
AK297474 brain .a 1 to 2139 14 to 2152 F127L tiling clone,   2141/2141
(100 %)
1 diff
(100.0 %id)
DC352137 brain .a 1 to 559 14 to 572       561/571
(98 %)
3 diff
(99.5 %id)
NM_206894.2   .a 1 to 3030 3 to 3032 exact RefSeq, AAA   3032/3032
(100 %)
0 diff
(100 %id)
DA819130   .a 1 to 567 3 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DB080275 testis .a 1 to 574 2 to 575   capped   574/574
(100 %)
1 diff
(99.9 %id)
DA105836 cerebellum .a 28 to 575 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
BI715382 Pancreas, Purified pancreatic islet .a 40 to 623 1 to 584       584/584
(100 %)
0 diff
(100 %id)
CA773758 Pancreas, Purified pancreatic islet .a 40 to 639 1 to 600   fully sequenced, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 600/600
(100 %)
5 diff
(99.2 %id)
AI183815   .a 41 to 448 410 to 3       408/411
(99 %)
1 diff
(99.8 %id)
AI873476 pooled .a 105 to 448 346 to 3       344/346
(99 %)
0 diff
(100 %id)
BI714811 Pancreas, Purified pancreatic islet .a 115 to 628 514 to 1       514/514
(100 %)
0 diff
(100 %id)
BU069053 Pancreas, Purified pancreatic islet .a 116 to 630 515 to 1   fully sequenced, Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 515/515
(100 %)
0 diff
(100 %id)
TI_1948226452   .a 117 to 1091 130 to 1099       970/1324
(73 %)
41 diff
(97.0 %id)
TI_1948226453   .a 117 to 832 119 to 838       720/1234
(58 %)
15 diff
(98.8 %id)
TI_1948226701   .a 117 to 1173 127 to 1178       1052/1359
(77 %)
44 diff
(96.8 %id)
TI_1948226702   .a 117 to 832 117 to 840       724/1274
(56 %)
21 diff
(98.4 %id)
TI_1948226948   .a 117 to 1045 128 to 1043       916/1333
(68 %)
29 diff
(97.9 %id)
TI_1948226949   .a 117 to 804 119 to 812       694/1252
(55 %)
10 diff
(99.3 %id)
EL735861 mixed .a 118 to 773 1 to 655       655/655
(100 %)
3 diff
(99.6 %id)
TI_1948227172   .a 127 to 856 139 to 871       731/1413
(51 %)
16 diff
(98.9 %id)
TI_1948227173   .a 127 to 653 131 to 663       531/1329
(39 %)
31 diff
(97.7 %id)
BM473790 melanotic melanoma, skin .a 157 to 1013 1 to 871       871/1139
(76 %)
19 diff
(98.4 %id)
CB243330 Human Lung Epithelial cells, lung .a 231 to 739 525 to 18   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 508/525
(96 %)
1 diff
(99.9 %id)
CD515963 White Matter .a 1440 to 2347 36 to 943   tiling clone,   908/943
(96 %)
6 diff
(99.4 %id)
AA056061 eye, retina .a 1778 to 2322 541 to 1   tiling clone, Submitted on the opposite strand 541/542
(99 %)
3 diff
(99.5 %id)
AA142993 uterus .a 2211 to 2715 1 to 492   fully sequenced,   492/492
(100 %)
3 diff
(99.4 %id)
AA143010 uterus .a 2211 to 2792 1 to 570   tiling clone, fully sequenced,   570/570
(100 %)
12 diff
(97.9 %id)
BM852743 stomach .a 2575 to 3012 1 to 436       436/436
(100 %)
1 diff
(99.8 %id)
AI808437 pooled .a 2600 to 3030 446 to 16   tiling clone, AAA   431/431
(100 %)
1 diff
(99.8 %id)
AA151098 uterus .a 2685 to 3027 345 to 1   fully sequenced,   345/345
(100 %)
2 diff
(99.5 %id)
AA151111 uterus .a 2762 to 3027 276 to 1   fully sequenced,   276/276
(100 %)
1 diff
(99.7 %id)
AI457947 pooled .a 2850 to 3033 187 to 4       184/187
(98 %)
0 diff
(100 %id)
BM803615 leiomyosarcoma, uterus .a 2924 to 3832 37 to 951   tiling clone,   915/956
(95 %)
8 diff
(99.2 %id)
DB256557 uterus .a 3227 to 3784 2 to 559   tiling clone, capped   558/558
(100 %)
0 diff
(100 %id)
AA058580 eye, retina .b-u 1 to 533 1 to 536   tiling clone, Submitted on the opposite strand 536/536
(100 %)
14 diff
(97.4 %id)
AI066655 senescent fibroblast .b-u 186 to 542 362 to 6       357/362
(98 %)
0 diff
(100 %id)
BF092771 testis_normal .b-u 281 to 884 1 to 599   tiling clone,   599/606
(98 %)
18 diff
(97.1 %id)
FN049972 breast carcinoma .b-u 493 to 567 1 to 74       74/75
(98 %)
2 diff
(97.4 %id)
TI_1948226455   .b-u 698 to 1831 1262 to 134       1129/1318
(85 %)
0 diff
(100 %id)
TI_1948226704   .b-u 808 to 1831 1150 to 134   tiling clone,   1017/1312
(77 %)
0 diff
(100 %id)
TI_1948226951   .b-u 817 to 1831 1140 to 134       1007/1311
(76 %)
0 diff
(100 %id)
BE714172 head_neck .b-u 824 to 1218 1 to 394   tiling clone,   394/394
(100 %)
3 diff
(99.3 %id)
TI_1948227175   .b-u 895 to 1831 1079 to 135       945/1352
(69 %)
0 diff
(100 %id)
TI_1948226950   .b-u 921 to 1831 1037 to 125   tiling clone,   913/1083
(84 %)
0 diff
(100 %id)
TI_1948226454   .b-u 1005 to 1831 958 to 126       833/1116
(74 %)
0 diff
(100 %id)
TI_1948226703   .b-u 1032 to 1831 938 to 124       815/1175
(69 %)
0 diff
(100 %id)
TI_1948227174   .b-u 1162 to 1831 831 to 151       681/1308
(52 %)
0 diff
(100 %id)
AI692841 adenocarcinoma, Pancreas .b-u 1290 to 1859 580 to 11   tiling clone, AAA   570/570
(100 %)
11 diff
(98.1 %id)
AI917553 serous papillary carcinoma, high grade, 2pooled tumors, uterus .b-u 1488 to 1862 392 to 19   tiling clone, AAA   374/374
(100 %)
1 diff
(99.8 %id)
DC352882 brain .c 1 to 567 1 to 567   tiling clone,   567/567
(100 %)
0 diff
(100 %id)
DC377558 brain .c 33 to 598 1 to 566       566/566
(100 %)
0 diff
(100 %id)
DC377423 brain .c 46 to 538 1 to 498       498/498
(100 %)
6 diff
(98.8 %id)
DC307556 cerebellum .c 50 to 637 1 to 589   tiling clone,   589/589
(100 %)
1 diff
(99.9 %id)
CN391226 embryonic stem cells, DMSO-treated H9 cellline .c 74 to 508 1 to 435       435/435
(100 %)
0 diff
(100 %id)
BF132049 hypernephroma, Kidney .c 151 to 882 1 to 740 L35W E36R N37T Y38T S39A ... tiling clone,   742/799
(92 %)
72 diff
(91.0 %id)
DC308617 cerebellum .d 1 to 581 1 to 583 exact tiling clone,   583/583
(100 %)
2 diff
(99.7 %id)
BX496436 Liver .e 1 to 539 1 to 539 V12A D32G I66V tiling clone,   539/539
(100 %)
5 diff
(99.1 %id)
DC324605 brain .f 1 to 579 1 to 579   tiling clone,   579/579
(100 %)
0 diff
(100 %id)
DC317587 amygdala .f 27 to 581 1 to 555       555/555
(100 %)
0 diff
(100 %id)
DC307379 cerebellum .f 33 to 563 1 to 534       534/567
(94 %)
6 diff
(99.0 %id)
DC304364 cerebellum .f 47 to 599 1 to 553       553/553
(100 %)
1 diff
(99.9 %id)
DC325137 brain .f 69 to 649 1 to 581 exact tiling clone,   581/581
(100 %)
0 diff
(100 %id)
AW373744 breast .g-u 1 to 609 1 to 606 F6R A7P Q8I M10A H12L ... tiling clone,   606/606
(100 %)
6 diff
(99.1 %id)
AW373762 breast .g-u 54 to 639 1 to 583   tiling clone,   583/593
(98 %)
13 diff
(97.9 %id)
AW370799 breast .g-u 307 to 562 1 to 253   tiling clone,   253/257
(98 %)
13 diff
(95.0 %id)
DA385875 thalamus .h-u 1 to 563 2 to 565 exact tiling clone, capped   564/564
(100 %)
1 diff
(99.9 %id)
BF056713 breast, lobullar carcinoma in situ .h-u 156 to 353 31 to 228       198/228
(86 %)
6 diff
(97.4 %id)
AA488741.
matches multiple genes
  .i-u 1 to 235 1 to 235   tiling clone, also hits gene flardeybu, ropabo 235/235
(100 %)
0 diff
(100 %id)
AW590786 pooled germ cell tumors .i-u 23 to 477 455 to 1 exact tiling clone,   455/455
(100 %)
7 diff
(98.5 %id)
AK000357   Gene ZNF790, variant not shown       available from FLJ, AAA This clone was ignored    
BC057245 Pooled, 40 cell lines Gene ZNF790, variant not shown       available from MGC, AAA This clone was ignored    
BE502068 pooled germ cell tumors Gene ZNF790, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b-u, .c, .d, .e, .f, .g-u, .h-u, .i-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C