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Gene WDR25TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
133 supporting clones for gene WDR25 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BX334199 Neuroblastoma Cot 50-normalized .a 1 to 800 1 to 800       800/800
(100 %)
8 diff
(99.0 %id)
BX248767 neuroblastoma .a 2 to 912 1 to 911   tiling clone,   911/911
(100 %)
0 diff
(100 %id)
CR621842 T cells (Jurkat cell line) Cot10-normalized .a 41 to 1952 1 to 1912 exact tiling clone,   1912/1912
(100 %)
0 diff
(100 %id)
BX379909 Placenta Cot 25-normalized .a 52 to 912 28 to 888       861/1017
(84 %)
11 diff
(99.0 %id)
BX387066 Placenta Cot 25-normalized .a 52 to 912 29 to 886       858/886
(96 %)
12 diff
(98.7 %id)
BX483756   .a 52 to 719 1 to 669       669/672
(99 %)
7 diff
(99.0 %id)
BG705426 brain, hippocampus .b 1 to 704 7 to 737   tiling clone,   712/885
(80 %)
40 diff
(95.5 %id)
BI552728 brain, hippocampus .b 1 to 713 4 to 716   tiling clone,   716/766
(93 %)
12 diff
(98.5 %id)
NM_024515.4   .b 1 to 2121 1 to 2121 exact RefSeq,   2121/2121
(100 %)
0 diff
(100 %id)
TI_44170778   .b 3 to 713 160 to 870       711/920
(77 %)
14 diff
(98.5 %id)
AA453069   .b 15 to 251 1 to 233       233/233
(100 %)
5 diff
(97.9 %id)
CB993807 placenta, pre-eclamptic placenta .b 46 to 614 28 to 605       578/868
(66 %)
22 diff
(97.5 %id)
CB991451 placenta, pre-eclamptic placenta .b 46 to 858 28 to 829       802/829
(96 %)
19 diff
(97.8 %id)
AY295082   .b 118 to 2121 1 to 2004 W88R S462I tiling clone,   2004/2004
(100 %)
2 diff
(100.0 %id)
BM474783 duodenal adenocarcinoma, cell line, small intestine .b 118 to 999 1 to 892       892/1054
(84 %)
19 diff
(98.2 %id)
AA452902   .b 1821 to 2108 289 to 2       288/289
(99 %)
0 diff
(100 %id)
TI_154003800   .c 1 to 564 625 to 63   tiling clone,   563/625
(90 %)
0 diff
(100 %id)
NM_001161476.1   .c 559 to 2548 1 to 1990 exact RefSeq,   1990/1990
(100 %)
0 diff
(100 %id)
AA091916   .c 568 to 781 1 to 214   tiling clone,   214/214
(100 %)
8 diff
(96.3 %id)
CN417935 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .c 585 to 1231 9 to 655   tiling clone,   647/655
(98 %)
9 diff
(98.7 %id)
TI_159677981   .c 595 to 1399 44 to 843       800/1008
(79 %)
14 diff
(98.7 %id)
AK291960   .c 596 to 2533 1 to 1938 F30L W88R H149R Q165R     1938/1938
(100 %)
6 diff
(99.7 %id)
CF131815 Chondrosarcoma Lung Metastasis cell lines, lung .c 596 to 1335 1 to 740       740/740
(100 %)
7 diff
(99.1 %id)
DA911212   .c 597 to 1168 2 to 573   capped   572/572
(100 %)
4 diff
(99.4 %id)
BM043871 carcinoma, cell line, Prostate .c 598 to 1419 1 to 823       823/823
(100 %)
18 diff
(97.9 %id)
DB472993 hippocampus .c 617 to 1083 1 to 467       467/467
(100 %)
3 diff
(99.4 %id)
DB476215 hippocampus .c 617 to 1103 1 to 486       486/486
(100 %)
5 diff
(99.0 %id)
DB476458 hippocampus .c 617 to 1116 1 to 500       500/500
(100 %)
4 diff
(99.2 %id)
AL709941 human skeletal muscle .c 620 to 1357 1 to 738       738/738
(100 %)
3 diff
(99.6 %id)
BM927980 brain .c 629 to 1477 16 to 867       852/1097
(77 %)
6 diff
(99.5 %id)
BX325608 Neuroblastoma Cot 25-normalized .c 636 to 1587 1 to 951       951/951
(100 %)
6 diff
(99.4 %id)
BX332244 Neuroblastoma Cot 25-normalized .c 636 to 1166 1 to 530       530/598
(88 %)
23 diff
(96.2 %id)
BX399568 Placenta Cot 25-normalized .c 636 to 1586 1 to 949       949/949
(100 %)
3 diff
(99.7 %id)
BX361662   .c 636 to 1465 30 to 859       830/870
(95 %)
14 diff
(98.4 %id)
BF689640 melanotic melanoma, high MDR (cell line), skin .c 636 to 1226 11 to 601   available from MGC,   591/601
(98 %)
6 diff
(99.1 %id)
BG702523 brain, hippocampus .c 636 to 1385 25 to 771       747/772
(96 %)
13 diff
(98.4 %id)
BG763989 melanotic melanoma, high MDR (cell line), skin .c 636 to 1474 11 to 847       837/890
(94 %)
14 diff
(98.5 %id)
BG767864 melanotic melanoma, high MDR (cell line), skin .c 636 to 1474 11 to 858       848/957
(88 %)
13 diff
(98.7 %id)
BM919464 pooled pancreas and spleen .c 636 to 1473 29 to 866       838/1083
(77 %)
11 diff
(99.0 %id)
BQ674421 epidermoid carcinoma, cell line, salivary gland .c 636 to 1404 8 to 781       774/971
(79 %)
22 diff
(97.8 %id)
CB594389 Blood, promyelocytic leukemia .c 636 to 1325 9 to 705       697/894
(77 %)
12 diff
(98.7 %id)
CF594178 Human Placenta, placenta .c 636 to 1413 48 to 834       787/897
(87 %)
18 diff
(98.0 %id)
BM710213 eye, optic nerve .c 636 to 1132 1 to 497       497/497
(100 %)
2 diff
(99.6 %id)
BM927519 lymph, lymphoma, cell line .c 637 to 1476 1 to 839       839/1063
(78 %)
5 diff
(99.6 %id)
BQ055101 lymph, lymphoma, cell line .c 637 to 1455 1 to 819       819/1110
(73 %)
11 diff
(99.1 %id)
BQ055916 lymph, lymphoma, cell line .c 637 to 1138 1 to 509       509/694
(73 %)
37 diff
(94.7 %id)
BQ061089 lymph, lymphoma, cell line .c 637 to 1476 1 to 839       839/1034
(81 %)
10 diff
(99.1 %id)
TI_57150820   .c 637 to 1476 30 to 879       850/956
(88 %)
21 diff
(97.9 %id)
BI761020 pooled colon, kidney, stomach .c 638 to 1476 1 to 850       850/927
(91 %)
22 diff
(97.7 %id)
TI_57150441   .c 644 to 1389 26 to 770       745/771
(96 %)
6 diff
(99.3 %id)
CR600063 Placenta Cot 25-normalized .c 646 to 2493 1 to 1848 exact tiling clone,   1848/1848
(100 %)
0 diff
(100 %id)
BX343690 Placenta Cot 25-normalized .c 646 to 1608 1 to 960       960/965
(99 %)
8 diff
(99.2 %id)
BX377796 Placenta Cot 25-normalized .c 646 to 1622 1 to 974       974/974
(100 %)
7 diff
(99.3 %id)
BQ221801 large cell carcinoma, lung .c 647 to 1469 1 to 831       831/856
(97 %)
16 diff
(98.2 %id)
BI762775 pooled colon, kidney, stomach .c 648 to 1389 1 to 741       741/742
(99 %)
5 diff
(99.4 %id)
BE206930 lung, small cell carcinoma .c 672 to 1073 1 to 402       402/402
(100 %)
1 diff
(99.8 %id)
BM455328 lymph, lymphoma, cell line .c 897 to 1919 1 to 1026       1026/1106
(92 %)
41 diff
(96.3 %id)
BX347013   .c 1011 to 1619 1 to 607       607/610
(99 %)
29 diff
(95.3 %id)
BX368302 Placenta Cot 25-normalized .c 1036 to 1622 587 to 1       587/587
(100 %)
45 diff
(92.4 %id)
BX390625   .c 1059 to 1918 21 to 870       850/875
(97 %)
17 diff
(98.1 %id)
BX347219 Neuroblastoma Cot 25-normalized .c 1073 to 1757 1 to 683       683/719
(94 %)
13 diff
(98.2 %id)
CN417934 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .c 1081 to 1569 13 to 501       489/501
(97 %)
7 diff
(98.7 %id)
BQ948101 eye, normal pigmented retinal epithelium .c 1134 to 2025 1 to 902       902/903
(99 %)
14 diff
(98.5 %id)
BX388556 Neuroblastoma Cot 50-normalized .c 1160 to 2008 1 to 837       837/848
(98 %)
20 diff
(97.7 %id)
BX367872 Placenta Cot 25-normalized .c 1246 to 2065 1 to 815       815/858
(94 %)
18 diff
(98.0 %id)
BX326006 Placenta Cot 25-normalized .c 1249 to 2066 1 to 817       817/817
(100 %)
7 diff
(99.2 %id)
BX371984   .c 1256 to 2172 910 to 1       910/913
(99 %)
21 diff
(97.7 %id)
BG337082 leiomyosarcoma cell line, uterus .c 1350 to 2065 1 to 710       710/851
(83 %)
13 diff
(98.5 %id)
BI118071 lung, small cell carcinoma .c 1458 to 2272 1 to 824       824/827
(99 %)
34 diff
(95.9 %id)
BX334200 Neuroblastoma Cot 50-normalized .c 1472 to 2361 1 to 889       889/894
(99 %)
11 diff
(98.8 %id)
BX347181   .c 1472 to 2187 728 to 14       715/728
(98 %)
5 diff
(99.4 %id)
BX379908 Placenta Cot 25-normalized .c 1473 to 2498 1025 to 4       1016/1025
(99 %)
7 diff
(99.4 %id)
BX377795 Placenta Cot 25-normalized .c 1479 to 2473 1001 to 10       992/1005
(98 %)
4 diff
(99.7 %id)
BX402275 Placenta Cot 25-normalized .c 1483 to 2493 1005 to 1       1005/1014
(99 %)
21 diff
(98.0 %id)
BX399567 Placenta Cot 25-normalized .c 1489 to 2505 1008 to 1       1008/1008
(100 %)
18 diff
(98.3 %id)
BQ330185 lung_tumor .c 1504 to 1845 348 to 7       342/348
(98 %)
1 diff
(99.8 %id)
BX325607 Neuroblastoma Cot 25-normalized .c 1514 to 2495 1015 to 39       977/1015
(96 %)
8 diff
(99.3 %id)
BG988584 head_neck .c 1545 to 1924 17 to 396       380/400
(95 %)
8 diff
(98.0 %id)
BG992808 head_neck .c 1571 to 1922 387 to 36       351/387
(90 %)
0 diff
(100 %id)
BQ950764 sciatic nerve .c 1608 to 2515 1 to 918       918/924
(99 %)
16 diff
(98.3 %id)
BG206249   .c 1639 to 1873 1 to 236       236/236
(100 %)
4 diff
(98.4 %id)
BX334198 Neuroblastoma Cot 50-normalized .c 1653 to 2499 845 to 1       845/845
(100 %)
14 diff
(98.4 %id)
AA044139 uterus .c 1708 to 1924 1 to 222       222/226
(98 %)
7 diff
(97.0 %id)
BX104523 uterus .c 1710 to 2442 1 to 733       733/733
(100 %)
1 diff
(99.9 %id)
BY798319 eye .c 1735 to 2366 1 to 632       632/632
(100 %)
1 diff
(99.9 %id)
BX361661   .c 1756 to 2482 766 to 39       728/735
(99 %)
14 diff
(98.1 %id)
BX392187 Neuroblastoma Cot 25-normalized .c 1767 to 2513 745 to 2       744/761
(97 %)
30 diff
(96.1 %id)
CA432028 cell lines, Enchondroma .c 1856 to 2538 702 to 19   AAA   684/684
(100 %)
4 diff
(99.5 %id)
BM692038 eye, human retina .c 1888 to 2355 9 to 476       468/476
(98 %)
8 diff
(98.4 %id)
BQ014278 Chondrosarcoma, Left Pubic Bone .c 1899 to 2533 654 to 19   AAA   636/636
(100 %)
1 diff
(99.9 %id)
BF939688 brain, glioblastoma (pooled) .c 1966 to 2249 531 to 248       284/531
(53 %)
0 diff
(100 %id)
BE301706 cervical carcinoma cell line, cervix .c 1981 to 2278 298 to 1       298/298
(100 %)
5 diff
(98.4 %id)
AW732162 lung, small cell carcinoma .c 2026 to 2548 523 to 1   tiling clone,   523/523
(100 %)
7 diff
(98.7 %id)
AI261823 Kidney .c 2035 to 2539 507 to 3       505/507
(99 %)
2 diff
(99.7 %id)
TI_151749103   .c 2063 to 2551 598 to 108       491/1022
(48 %)
0 diff
(100 %id)
DB541744 hippocampus .c 2076 to 2546 1 to 471     Submitted on the opposite strand 471/471
(100 %)
1 diff
(99.8 %id)
DB545208 hippocampus .c 2092 to 2546 1 to 455     Submitted on the opposite strand 455/455
(100 %)
1 diff
(99.8 %id)
AA911483 carcinoid, lung .c 2099 to 2538 461 to 23   AAA   439/439
(100 %)
9 diff
(98.0 %id)
BF513170   .c 2099 to 2543 462 to 18   AAA   445/445
(100 %)
0 diff
(100 %id)
AA044106 uterus .c 2108 to 2546 437 to 1       437/441
(99 %)
5 diff
(98.9 %id)
BM986939 mixed .c 2133 to 2543 429 to 19   AAA   411/419
(98 %)
1 diff
(99.8 %id)
AI346615 adenocarcinoma, colon .c 2190 to 2551 363 to 2       362/363
(99 %)
0 diff
(100 %id)
AJ574246 pectoral muscle (after mastectomy) .c 2197 to 2532 8 to 340       333/340
(97 %)
6 diff
(98.3 %id)
AI580921   .c 2217 to 2533 353 to 37   AAA   317/317
(100 %)
8 diff
(97.5 %id)
AI991675 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .c 2220 to 2551 333 to 2       332/333
(99 %)
0 diff
(100 %id)
AA732068 germinal center B cell .c 2221 to 2489 269 to 1       269/271
(99 %)
2 diff
(99.3 %id)
AI672752 thymus, pooled .c 2221 to 2547 344 to 18   AAA   327/327
(100 %)
3 diff
(99.1 %id)
AA766086 germinal center B cell .c 2232 to 2489 257 to 1       257/257
(100 %)
1 diff
(99.7 %id)
AA358470 lung .c 2289 to 2529 1 to 241       241/241
(100 %)
0 diff
(100 %id)
BC003641 Muscle, rhabdomyosarcoma .d 1 to 1212 1 to 1212 exact tiling clone, available from MGC, AAA   1212/1212
(100 %)
1 diff
(100.0 %id)
BE294932 muscle, rhabdomyosarcoma .d 21 to 420 1 to 392       392/486
(80 %)
10 diff
(98.0 %id)
TI_1948102969   .d 101 to 970 130 to 1007 V232G R239P V240G L241P M242D ... fully sequenced,   878/1007
(87 %)
38 diff
(96.3 %id)
TI_1948103133   .d 101 to 271 128 to 298   fully sequenced,   171/197
(86 %)
6 diff
(97.0 %id)
TI_1948103298   .d 101 to 242 136 to 277       142/170
(83 %)
6 diff
(96.5 %id)
TI_1948103461   .d 101 to 272 132 to 303       172/198
(86 %)
6 diff
(97.0 %id)
CV026104 mixed .d 102 to 687 1 to 573       573/577
(99 %)
9 diff
(98.5 %id)
TI_1948103134   .d 241 to 972 846 to 114   fully sequenced,   733/846
(86 %)
24 diff
(97.2 %id)
TI_1948103299   .d 293 to 972 794 to 115       680/1327
(51 %)
21 diff
(98.5 %id)
TI_1948103462   .d 430 to 972 661 to 118       544/1349
(40 %)
13 diff
(99.1 %id)
TI_1948102970   .d 572 to 972 514 to 114   fully sequenced,   401/514
(78 %)
6 diff
(98.9 %id)
BC067872 Placenta, pre-eclamptic .e 1 to 2055 1 to 2055 K59R W88R T119M H149R tiling clone, AAA   2055/2055
(100 %)
5 diff
(99.8 %id)
BE267252 lung, small cell carcinoma .f 1 to 803 1 to 809 C47V M48C Y49I Q50S H51I ... tiling clone,   809/821
(98 %)
12 diff
(98.6 %id)
TI_57218613   .g 1 to 801 27 to 831 M195H S196A R197A R198D R199G ... tiling clone,   803/832
(96 %)
28 diff
(96.7 %id)
BI755602 brain .g 4 to 801 1 to 802   tiling clone,   800/803
(99 %)
17 diff
(97.9 %id)
CT003969 T-Lymphocytes .h 1 to 705 1 to 705   tiling clone,   705/708
(99 %)
3 diff
(99.6 %id)
AA306315   .h 61 to 421 1 to 360       360/360
(100 %)
1 diff
(99.8 %id)
AW955247   .h 62 to 779 1 to 721   tiling clone,   721/722
(99 %)
18 diff
(97.6 %id)
BE545888 cervical carcinoma cell line, cervix .i 1 to 721 1 to 729 R14S I15N T16H T17Y K19E ... tiling clone,   729/751
(97 %)
39 diff
(94.9 %id)
CN260084 embryonic stem cells, cell lines H1, H7, andH9 .i 57 to 693 12 to 647   tiling clone,   636/647
(98 %)
6 diff
(99.1 %id)
F11276 brain, total brain .j 1 to 271 2 to 272       272/272
(100 %)
2 diff
(99.3 %id)
BC007953 Skin, melanotic melanoma, high MDR. .j 1 to 1749 11 to 1759 exact tiling clone, available from MGC, AAA   1750/1750
(100 %)
3 diff
(99.9 %id)
R17876 whole brain .j 4 to 333 1 to 335       335/346
(96 %)
9 diff
(97.4 %id)
H29451 whole brain .j 17 to 403 1 to 395       395/401
(98 %)
21 diff
(94.8 %id)
AA284891 ovarian tumor, ovary .j 23 to 294 1 to 272       272/272
(100 %)
5 diff
(98.2 %id)
AA284687 ovarian tumor, ovary .j 1279 to 1754 475 to 1       475/479
(99 %)
7 diff
(98.6 %id)
H29452 whole brain .j 1349 to 1762 432 to 12   AAA   421/438
(96 %)
20 diff
(95.5 %id)
F08937 brain, total brain .j 1448 to 1754 307 to 1       307/307
(100 %)
0 diff
(100 %id)
R43125 whole brain .j 1465 to 1762 316 to 12   AAA   305/361
(84 %)
10 diff
(97.3 %id)
DA265974 caudate nucleus .k 1 to 509 2 to 510   tiling clone, capped   509/509
(100 %)
1 diff
(99.9 %id)
BI523309 brain .k 628 to 1061 458 to 12   tiling clone,   558/723
(77 %)
18 diff
(97.6 %id)
TI_44185271   .k 628 to 1061 458 to 12       558/723
(77 %)
18 diff
(97.6 %id)
BM720816 eye, fetal eye .l 1 to 652 1 to 651 exact tiling clone,   651/651
(100 %)
3 diff
(99.6 %id)
BM676918 eye, fetal eye .l 683 to 1328 665 to 19   tiling clone, AAA   647/647
(100 %)
2 diff
(99.7 %id)
W65485 heart Gene WDR25, variant not shown       fully sequenced, Suspected internal deletion, this clone was ignored    
W65496 heart Gene WDR25, variant not shown       fully sequenced, Suspected internal deletion, this clone was ignored    
DB035700 testis Gene WDR25, variant not shown       capped This clone was ignored    
DB337415 testis Gene WDR25, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI