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Gene C6orf223TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
53 supporting clones for gene C6orf223 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BC029071 Lymph, lymphoma .a 1 to 2761 11 to 2771 exact tiling clone, available from MGC, AAA   2761/2761
(100 %)
1 diff
(100.0 %id)
NM_153246.4   .a 1 to 3578 1 to 3578 exact RefSeq, AAA   3578/3578
(100 %)
0 diff
(100 %id)
BQ067334 pooled brain, lung, testis .a 93 to 738 1 to 656       656/1202
(54 %)
56 diff
(95.4 %id)
BC032706 Lymph, lymphoma .b 1 to 3073 11 to 3086 G113A D115G A116D G117A H118G ... tiling clone, available from MGC, AAA   3076/3076
(100 %)
1 diff
(100.0 %id)
BM454274 lymph, lymphoma, cell line .b 3 to 493 1 to 491       491/1428
(34 %)
25 diff
(98.3 %id)
BQ901032 sympathetic trunk .b 60 to 693 1 to 634       634/935
(67 %)
17 diff
(98.2 %id)
BX383279   .b 71 to 813 1 to 747   tiling clone,   747/747
(100 %)
24 diff
(96.8 %id)
NM_001171992.1   .c 1 to 3621 1 to 3621 exact RefSeq, AAA   3621/3621
(100 %)
0 diff
(100 %id)
CR590223 B cells (Ramos cell line) Cot 25-normalized .c 18 to 2774 1 to 2757 exact tiling clone,   2757/2757
(100 %)
0 diff
(100 %id)
BX342526   .c 18 to 967 1 to 950 A108X A109X P133R R134G S135A ...     950/950
(100 %)
7 diff
(99.3 %id)
BI257654 cervical carcinoma cell line, cervix .c 78 to 738 1 to 658       658/659
(99 %)
13 diff
(98.1 %id)
TI_1948090055   .c 124 to 757 130 to 757       628/1433
(43 %)
25 diff
(98.3 %id)
TI_1948090177   .c 124 to 784 131 to 798       668/1470
(45 %)
28 diff
(98.1 %id)
TI_1948090314   .c 124 to 681 132 to 687       556/1426
(38 %)
22 diff
(98.5 %id)
TI_1948090440   .c 124 to 652 134 to 668       535/1395
(38 %)
16 diff
(98.9 %id)
BI224365 cervical carcinoma cell line, cervix .c 539 to 1008 1 to 477       477/1150
(41 %)
15 diff
(98.7 %id)
DB136447 thymus .c 697 to 1238 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
BX328225   .c 746 to 1650 1 to 903       903/904
(99 %)
24 diff
(97.4 %id)
AA552719 colon, tumor .c 937 to 1453 517 to 1       517/517
(100 %)
4 diff
(99.3 %id)
BM795060 Ascites, stomach .c 1016 to 1618 1 to 603       603/603
(100 %)
3 diff
(99.6 %id)
AW651749   .c 1073 to 1503 1 to 431       431/431
(100 %)
0 diff
(100 %id)
BX391989   .c 1075 to 1975 902 to 1       902/906
(99 %)
0 diff
(100 %id)
BG330764 large cell carcinoma, lung .c 1133 to 1693 1 to 558       558/585
(95 %)
8 diff
(98.7 %id)
BM714177 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 1166 to 1819 1 to 654       654/654
(100 %)
0 diff
(100 %id)
CF780738 Pooled Chondrosarcoma Tumor cells .c 1276 to 2067 8 to 790       783/907
(86 %)
6 diff
(99.4 %id)
AW849503 colon .c 1708 to 1858 1 to 151       151/151
(100 %)
0 diff
(100 %id)
BX342525   .c 1826 to 2753 939 to 18       922/939
(98 %)
0 diff
(100 %id)
AA522884 lung, lung tumor .c 2235 to 2808 572 to 1       572/575
(99 %)
3 diff
(99.5 %id)
CR590009 HeLa cells Cot 25-normalized .c 2249 to 2812 1 to 564       564/564
(100 %)
0 diff
(100 %id)
BX341660   .c 2249 to 2812 1 to 565       565/565
(100 %)
6 diff
(99.0 %id)
BF515759   .c 2353 to 2810 472 to 15   AAA   458/458
(100 %)
1 diff
(99.8 %id)
AW008061 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .c 2360 to 2811 452 to 1       452/452
(100 %)
1 diff
(99.8 %id)
AW273087 colon, moderately-differentiated adenocarcinoma .c 2370 to 2810 441 to 1       441/441
(100 %)
1 diff
(99.8 %id)
BU536549 mixed (pool of 40 RNAs) .c 2462 to 2807 1 to 346   AAA   346/346
(100 %)
2 diff
(99.5 %id)
BX090075 adenocarcinoma, colon .c 2548 to 3160 1 to 613   tiling clone,   613/621
(98 %)
1 diff
(99.9 %id)
TI_153987567   .c 3087 to 3621 618 to 81   AAA   538/538
(100 %)
6 diff
(98.9 %id)
AW203959   .c 3107 to 3621 535 to 18   tiling clone, AAA   518/518
(100 %)
6 diff
(98.9 %id)
AI280876 adenocarcinoma, colon .c 3147 to 3621 473 to 1       473/473
(100 %)
9 diff
(98.1 %id)
AA857189 adenocarcinoma, colon .c 3186 to 3621 434 to 1       434/434
(100 %)
4 diff
(99.1 %id)
AI391645 B-cell, chronic lymphotic leukemia .c 3194 to 3620 426 to 1   tiling clone,   426/426
(100 %)
2 diff
(99.6 %id)
BF431581 Kidney .c 3219 to 3621 404 to 1       404/412
(98 %)
5 diff
(98.8 %id)
AI655624 pooled germ cell tumors .c 3260 to 3621 362 to 1       362/362
(100 %)
0 diff
(100 %id)
AI917732 pooled germ cell tumors .c 3260 to 3621 363 to 1       363/363
(100 %)
3 diff
(99.2 %id)
AI654895 pooled germ cell tumors .c 3260 to 3621 362 to 1       362/362
(100 %)
2 diff
(99.5 %id)
AW024064 pooled germ cell tumors .c 3260 to 3624 370 to 7   tiling clone,   364/370
(98 %)
0 diff
(100 %id)
BF000139 colon, colon tumor, RER+ .c 3309 to 3617 313 to 5       309/313
(98 %)
0 diff
(100 %id)
AI962299 pooled germ cell tumors .c 3387 to 3621 235 to 1       235/235
(100 %)
2 diff
(99.2 %id)
AW136542   .c 3400 to 3621 239 to 18   AAA   222/222
(100 %)
0 diff
(100 %id)
AL555526 placenta .d 1 to 869 1 to 869 V60M A85G G87D D88A A89G ... tiling clone, Suspected internal deletion 869/869
(100 %)
5 diff
(99.5 %id)
AL578005 placenta .d 2098 to 2580 482 to 1   tiling clone, Suspected internal deletion 876/884
(99 %)
31 diff
(96.5 %id)
BX099829 colon, colon tumor, RER+ Gene C6orf223, variant not shown         Suspected internal deletion, this clone was ignored    
CV030795 mixed Gene C6orf223, variant not shown         Suspected internal deletion, this clone was ignored    
AI739595 colon, colon tumor, RER+ Gene C6orf223, variant not shown       AAA Suspected internal deletion, suspected internal deletion, this clone was ignored    
BI257395 cervical carcinoma cell line, cervix Gene C6orf223, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes