To see this page, please, enable javaScript and styleSheets on your browser: Tools -> Internet Options ...
Reload !
Gene SLC44A3TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
160 supporting clones for gene SLC44A3 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DC371254   .a 1 to 567 1 to 567   tiling clone,   567/567
(100 %)
1 diff
(99.9 %id)
AK316123 colon .a 51 to 2095 1 to 2045   tiling clone,   2045/2054
(99 %)
4 diff
(99.9 %id)
DC345047 colon .a 51 to 633 1 to 585       585/585
(100 %)
3 diff
(99.5 %id)
BP277400 Kidney .a 51 to 613 1 to 563       563/564
(99 %)
14 diff
(97.6 %id)
TI_57151784   .a 1013 to 1968 31 to 979   tiling clone,   949/980
(96 %)
26 diff
(97.4 %id)
BX281337 pooled colon, kidney, stomach .a 1014 to 1514 1 to 501       501/501
(100 %)
1 diff
(99.9 %id)
BI763810 pooled colon, kidney, stomach .a 1015 to 1968 1 to 947       947/948
(99 %)
20 diff
(97.9 %id)
BE702894 nervous_normal .a 1307 to 1710 403 to 1       403/403
(100 %)
2 diff
(99.6 %id)
AL540829 placenta .b 1 to 1028 1 to 1012   tiling clone,   1012/1018
(99 %)
25 diff
(97.6 %id)
DC325725 caudate nucleus .b 10 to 506 1 to 497   tiling clone,   497/497
(100 %)
0 diff
(100 %id)
AK303906 trachea .b 22 to 2094 1 to 2074   tiling clone,   2074/2074
(100 %)
3 diff
(99.9 %id)
DC414370 trachea .b 22 to 625 1 to 604       604/604
(100 %)
0 diff
(100 %id)
DC327154 caudate nucleus .b 45 to 604 1 to 560       560/560
(100 %)
1 diff
(99.9 %id)
DC311042 alzheimer cortex .c 1 to 416 1 to 416   tiling clone,   416/421
(98 %)
1 diff
(99.8 %id)
NM_001114106.1   .c 1 to 2392 1 to 2392 exact RefSeq, AAA   2392/2392
(100 %)
0 diff
(100 %id)
CR600415 Neuroblastoma Cot 50-normalized .c 6 to 2161 1 to 2156 exact tiling clone,   2156/2156
(100 %)
0 diff
(100 %id)
AL530322 brain, neuroblastoma cells, Neuroblastoma Cot 50-normalized .c 6 to 1080 1 to 1069   fully sequenced,   1069/1069
(100 %)
8 diff
(99.3 %id)
BM546450 brain, hippocampus .c 21 to 866 8 to 854       847/1097
(77 %)
9 diff
(99.2 %id)
BP270666 small intestine .c 28 to 609 1 to 582       582/582
(100 %)
2 diff
(99.7 %id)
BI824953 pooled brain, lung, testis .c 34 to 745 1 to 712   available from MGC,   712/713
(99 %)
5 diff
(99.3 %id)
TI_57196653   .c 34 to 745 1 to 712       712/713
(99 %)
5 diff
(99.3 %id)
DA749687   .c 34 to 597 2 to 565   capped   564/564
(100 %)
1 diff
(99.9 %id)
BC033858 Brain, Lung, Testis, adult, pooled whole .c 35 to 2392 1 to 2358 V438I tiling clone, available from MGC, AAA   2358/2358
(100 %)
1 diff
(100.0 %id)
BG538670 lung .c 51 to 590 1 to 540       540/540
(100 %)
3 diff
(99.5 %id)
AX721168   .c 52 to 2393 1 to 2436 E13D V144G F231L F233V R234Q ...     2330/2440
(95 %)
111 diff
(95.5 %id)
CA394765 eye, RPE/choroid .c 52 to 570 1 to 519       519/519
(100 %)
0 diff
(100 %id)
BI765961 pooled colon, kidney, stomach .c 61 to 649 1 to 589       589/590
(99 %)
5 diff
(99.2 %id)
TI_57149778   .c 61 to 649 1 to 589       589/590
(99 %)
5 diff
(99.2 %id)
DA919538 small intestine .c 111 to 673 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
AW834783 leiomios .c 168 to 637 1 to 470       470/470
(100 %)
8 diff
(98.3 %id)
CD637751   .c 238 to 330 1 to 93       93/93
(100 %)
4 diff
(95.7 %id)
CD637752   .c 238 to 323 86 to 1       86/86
(100 %)
4 diff
(95.4 %id)
CD637753   .c 238 to 332 3 to 97       95/97
(97 %)
6 diff
(93.9 %id)
CD637754   .c 238 to 330 93 to 1       93/93
(100 %)
4 diff
(95.7 %id)
CD637755   .c 238 to 331 1 to 94       94/94
(100 %)
4 diff
(95.8 %id)
CD637756   .c 238 to 325 88 to 1       88/88
(100 %)
4 diff
(95.5 %id)
CD637757   .c 238 to 331 1 to 92       92/92
(100 %)
6 diff
(93.5 %id)
CD637758   .c 238 to 329 92 to 1       92/92
(100 %)
6 diff
(93.5 %id)
TI_1948216147   .c 247 to 993 134 to 880       747/1316
(56 %)
18 diff
(98.7 %id)
TI_1948216305   .c 247 to 1180 129 to 1064       936/1340
(69 %)
47 diff
(96.5 %id)
TI_1948216620   .c 247 to 993 132 to 875       744/1310
(56 %)
17 diff
(98.8 %id)
EL734781 mixed .c 252 to 898 1 to 647       647/647
(100 %)
0 diff
(100 %id)
CD513960 brain, Pituitary .c 349 to 1112 1 to 772       772/873
(88 %)
24 diff
(97.3 %id)
AW934861 denis_drash .c 386 to 709 28 to 356       329/356
(92 %)
11 diff
(97.0 %id)
AY358659   .c 544 to 2200 1 to 1657       1657/1660
(99 %)
1 diff
(100.0 %id)
R75784 breast .c 544 to 887 1 to 345       345/616
(56 %)
1 diff
(99.9 %id)
BQ425981 melanotic melanoma, skin .c 693 to 1439 1 to 753       753/904
(83 %)
9 diff
(99.1 %id)
CB118486 Liver .c 736 to 1297 1 to 562       562/562
(100 %)
0 diff
(100 %id)
BM794382 Ascites, stomach .c 798 to 1398 1 to 601       601/601
(100 %)
1 diff
(99.9 %id)
BX409914 placenta .c 868 to 1345 1 to 479       479/479
(100 %)
4 diff
(99.2 %id)
CF595925 Stomach, adenocarcinoma .c 980 to 1588 1 to 609       609/782
(77 %)
7 diff
(99.2 %id)
AW821873 stomach .c 986 to 1536 1 to 552       552/552
(100 %)
9 diff
(98.4 %id)
AW821897 stomach .c 986 to 1536 1 to 552       552/552
(100 %)
9 diff
(98.4 %id)
AW860155 colon .c 990 to 1536 17 to 558       542/558
(97 %)
8 diff
(98.6 %id)
AW860201 colon .c 990 to 1536 17 to 558       542/558
(97 %)
8 diff
(98.6 %id)
AW821877 stomach .c 993 to 1536 1 to 545       545/545
(100 %)
5 diff
(99.1 %id)
AW821901 stomach .c 993 to 1536 1 to 545       545/545
(100 %)
5 diff
(99.1 %id)
AW862384 colon .c 994 to 1536 19 to 555       537/555
(96 %)
8 diff
(98.6 %id)
AW860152 colon .c 995 to 1536 1 to 541       541/541
(100 %)
12 diff
(97.8 %id)
AW860197 colon .c 995 to 1536 1 to 541       541/541
(100 %)
12 diff
(97.8 %id)
AW860203 colon .c 998 to 1536 536 to 1       536/552
(97 %)
11 diff
(98.1 %id)
AW862358 colon .c 998 to 1536 536 to 1       536/552
(97 %)
11 diff
(98.1 %id)
AW821872 stomach .c 1003 to 1536 1 to 534       534/534
(100 %)
2 diff
(99.7 %id)
AW821874 stomach .c 1003 to 1536 533 to 2       532/533
(99 %)
4 diff
(99.3 %id)
AW821881 stomach .c 1003 to 1536 1 to 533       533/533
(100 %)
3 diff
(99.5 %id)
AW821882 stomach .c 1003 to 1549 552 to 7       546/552
(98 %)
4 diff
(99.3 %id)
AW821883 stomach .c 1003 to 1521 520 to 2       519/520
(99 %)
2 diff
(99.7 %id)
AW821896 stomach .c 1003 to 1536 1 to 534       534/534
(100 %)
2 diff
(99.7 %id)
AW821898 stomach .c 1003 to 1536 533 to 2       532/533
(99 %)
4 diff
(99.3 %id)
AW821905 stomach .c 1003 to 1536 1 to 533       533/533
(100 %)
3 diff
(99.5 %id)
AW821906 stomach .c 1003 to 1549 552 to 7       546/552
(98 %)
4 diff
(99.3 %id)
AW821907 stomach .c 1003 to 1521 520 to 2       519/520
(99 %)
2 diff
(99.7 %id)
AW860129 colon .c 1003 to 1502 512 to 12       499/512
(97 %)
1 diff
(99.9 %id)
AW860131 colon .c 1003 to 1528 526 to 2       525/526
(99 %)
8 diff
(98.5 %id)
AW860156 colon .c 1003 to 1538 532 to 1       532/532
(100 %)
13 diff
(97.6 %id)
AW860157 colon .c 1003 to 1556 559 to 10       550/559
(98 %)
6 diff
(99.0 %id)
AW860198 colon .c 1003 to 1550 548 to 3       546/548
(99 %)
4 diff
(99.3 %id)
AW860200 colon .c 1003 to 1522 521 to 2       520/521
(99 %)
5 diff
(99.1 %id)
AW860202 colon .c 1003 to 1538 532 to 1       532/532
(100 %)
13 diff
(97.6 %id)
AW860204 colon .c 1003 to 1556 559 to 10       550/559
(98 %)
6 diff
(99.0 %id)
AW860205 colon .c 1003 to 1345 503 to 161       344/503
(68 %)
1 diff
(99.9 %id)
AW862356 colon .c 1003 to 1550 548 to 3       546/548
(99 %)
4 diff
(99.3 %id)
AW862357 colon .c 1003 to 1522 521 to 2       520/521
(99 %)
5 diff
(99.1 %id)
AW821879 stomach .c 1004 to 1536 1 to 533       533/533
(100 %)
3 diff
(99.5 %id)
AW821903 stomach .c 1004 to 1536 1 to 533       533/533
(100 %)
3 diff
(99.5 %id)
BG211428   .c 1011 to 1243 1 to 233       233/233
(100 %)
7 diff
(97.0 %id)
AW821878 stomach .c 1014 to 1536 7 to 528       522/528
(98 %)
8 diff
(98.5 %id)
AW821902 stomach .c 1014 to 1536 7 to 528       522/528
(98 %)
8 diff
(98.5 %id)
AW862347 colon .c 1033 to 1536 1 to 505       505/505
(100 %)
14 diff
(97.3 %id)
CB145566 Liver .c 1042 to 1475 1 to 434       434/434
(100 %)
2 diff
(99.6 %id)
AW860130 colon .c 1047 to 1536 6 to 497       492/497
(98 %)
9 diff
(98.2 %id)
AL530321 brain, neuroblastoma cells, Neuroblastoma Cot 50-normalized .c 1050 to 2161 1108 to 1   fully sequenced,   1108/1108
(100 %)
15 diff
(98.7 %id)
AW860127 colon .c 1069 to 1536 1 to 469       469/469
(100 %)
16 diff
(96.6 %id)
AA470995   .c 1165 to 1250 8 to 93       86/93
(92 %)
0 diff
(100 %id)
BF334617 colon .c 1171 to 1536 34 to 403       370/403
(91 %)
16 diff
(96.1 %id)
TI_1948216306   .c 1172 to 2068 1021 to 123       899/1199
(74 %)
21 diff
(98.3 %id)
TI_1948216148   .c 1183 to 2072 1021 to 119       903/1234
(73 %)
21 diff
(98.3 %id)
TI_1948216621   .c 1200 to 2068 1005 to 123       883/1246
(70 %)
33 diff
(97.4 %id)
AA329432   .c 1341 to 1653 1 to 310       313/310
(100 %)
4 diff
(98.8 %id)
BI758993 pooled colon, kidney, stomach .c 1343 to 2089 10 to 756       747/756
(98 %)
6 diff
(99.3 %id)
TI_57145892   .c 1343 to 2089 71 to 817       747/817
(91 %)
6 diff
(99.3 %id)
TI_149303274   .c 1354 to 2199 920 to 77   AAA   844/1007
(83 %)
4 diff
(99.7 %id)
BE695019 breast .c 1406 to 1815 410 to 1       410/410
(100 %)
2 diff
(99.6 %id)
TI_57177571   .c 1417 to 2200 26 to 807       782/811
(96 %)
9 diff
(98.9 %id)
BI766348 pooled lung and spleen .c 1424 to 2200 1 to 775       775/779
(99 %)
3 diff
(99.7 %id)
CB851041 lung, Primary Lung Cystic Fibrosis EpithelialCells .c 1466 to 2199 751 to 19   AAA   733/733
(100 %)
1 diff
(99.9 %id)
CA314227 Human Lung Epithelial cells, lung .c 1488 to 2199 730 to 19   AAA   712/712
(100 %)
0 diff
(100 %id)
BF332895 breast .c 1510 to 1725 219 to 4       216/219
(98 %)
0 diff
(100 %id)
BM855242 stomach .c 1524 to 1885 10 to 372       362/372
(97 %)
8 diff
(97.9 %id)
BG460622   .c 1593 to 2198 9 to 615       607/844
(71 %)
16 diff
(98.2 %id)
AW269723 lung, two pooled squamous cell carcinomas .c 1608 to 2199 592 to 1       592/592
(100 %)
0 diff
(100 %id)
AL540828.
matches multiple genes
placenta .c 1644 to 2355 735 to 21     also hits gene ENPEP 715/780
(91 %)
11 diff
(98.6 %id)
BG927183 cartilage .c 1701 to 2068 56 to 423       368/425
(86 %)
9 diff
(97.9 %id)
BJ995909 hepatoblastoma .c 1716 to 2164 449 to 1       449/449
(100 %)
0 diff
(100 %id)
AV745240 Pituitary .c 1729 to 2202 1 to 476       476/605
(78 %)
12 diff
(98.1 %id)
AA809640 colon .c 1760 to 2200 442 to 2       441/442
(99 %)
1 diff
(99.8 %id)
AV745214 Pituitary .c 1760 to 2200 1 to 440       440/635
(69 %)
7 diff
(98.9 %id)
AI690613 serous papillary carcinoma, high grade, 2pooled tumors, uterus .c 1766 to 2199 458 to 24   AAA   435/435
(100 %)
6 diff
(98.7 %id)
AA978030 Kidney, kidney tumor .c 1768 to 2186 419 to 1       419/419
(100 %)
0 diff
(100 %id)
AV745272 Pituitary .c 1773 to 2199 1 to 428   AAA   428/428
(100 %)
4 diff
(99.1 %id)
AV745339 Pituitary .c 1774 to 2199 1 to 426   AAA   426/426
(100 %)
5 diff
(98.9 %id)
AV745289 Pituitary .c 1780 to 2199 1 to 421   AAA   421/421
(100 %)
3 diff
(99.3 %id)
BX097012 serous papillary carcinoma, high grade, 2pooled tumors, uterus .c 1787 to 2199 427 to 15   AAA   413/413
(100 %)
1 diff
(99.8 %id)
AA604003 Prostate, prostate tumor .c 1790 to 2198 409 to 1       409/409
(100 %)
0 diff
(100 %id)
AI806071 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 1798 to 2199 427 to 26   AAA   402/402
(100 %)
6 diff
(98.6 %id)
AW439737 serous papillary carcinoma, high grade, 2pooled tumors, uterus .c 1801 to 2200 400 to 1       400/400
(100 %)
0 diff
(100 %id)
AA470963   .c 1803 to 2197 395 to 1       395/395
(100 %)
0 diff
(100 %id)
AA576327 bulk tumor, colon .c 1803 to 1987 187 to 3       185/187
(98 %)
1 diff
(99.5 %id)
AA975586 2 pooled tumors (clear cell type), Kidney .c 1806 to 2200 399 to 4       396/399
(99 %)
0 diff
(100 %id)
AA873189 2 pooled tumors (clear cell type), Kidney .c 1822 to 2199 399 to 22   AAA   378/378
(100 %)
0 diff
(100 %id)
BM925450 brain .c 1849 to 2390 12 to 556       545/588
(92 %)
7 diff
(98.9 %id)
BC040448.
matches multiple genes
brain, Brain, adult, 6 pooled whole brains .c 1849 to 2388 1 to 543   available from MGC, AAA This clone was ignored, also hits gene LOC729375 543/543
(100 %)
1 diff
(99.9 %id)
AW009507 colon .c 1893 to 2200 309 to 2       308/309
(99 %)
0 diff
(100 %id)
AW007109 colon .c 1893 to 2200 308 to 1       308/308
(100 %)
0 diff
(100 %id)
AA328195   .c 1987 to 2279 302 to 8     Submitted on the opposite strand 295/302
(97 %)
0 diff
(100 %id)
AA628795   .c 2054 to 2393 344 to 5       340/344
(98 %)
0 diff
(100 %id)
AA904745 pooled .c 2120 to 2200 83 to 3       81/83
(97 %)
0 diff
(100 %id)
AK313574 small intestine .d 1 to 1956 2 to 1957 V437I S517P M551V K608R tiling clone,   1957/1957
(100 %)
5 diff
(99.8 %id)
NM_152369.3   .e 1 to 2329 2 to 2330 exact RefSeq, AAA   2330/2330
(100 %)
0 diff
(100 %id)
DA538278 Kidney .e 1 to 608 2 to 609   tiling clone, capped   608/609
(99 %)
2 diff
(99.7 %id)
DB104671 thymus .e 61 to 618 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DA631106 Kidney .e 65 to 639 2 to 576   capped   575/575
(100 %)
1 diff
(99.9 %id)
BC053877 Colon, Kidney, Stomach, adult, whole pooled .e 77 to 2136 1 to 2059 V390I tiling clone, available from MGC, AAA   2059/2059
(100 %)
2 diff
(100.0 %id)
CR746846 pooled colon, kidney, stomach .e 77 to 606 1 to 530       530/530
(100 %)
0 diff
(100 %id)
BM924167 pooled colon, kidney, stomach .e 77 to 804 9 to 739       731/1149
(63 %)
6 diff
(99.5 %id)
BX403742 placenta .e 82 to 1116 1 to 1025       1025/1025
(100 %)
20 diff
(98.1 %id)
DA636673 Kidney .e 94 to 622 2 to 531   capped   530/531
(99 %)
3 diff
(99.5 %id)
BP277440 Kidney .e 106 to 688 1 to 584       584/584
(100 %)
2 diff
(99.7 %id)
DA915709 small intestine .e 107 to 930 2 to 822   capped   821/829
(99 %)
9 diff
(99.0 %id)
DA919172 small intestine .e 107 to 671 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DB331517 small intestine .e 1896 to 2331 442 to 1   tiling clone,   442/527
(83 %)
10 diff
(98.2 %id)
DC393161 breast, tumor tissue .f 1 to 540 1 to 540   tiling clone,   540/540
(100 %)
1 diff
(99.9 %id)
AK300193 placenta .f 96 to 2007 1 to 1912 V358I tiling clone,   1912/1912
(100 %)
1 diff
(100.0 %id)
DC380626 placenta .f 96 to 659 1 to 564       564/564
(100 %)
0 diff
(100 %id)
BX648225 Liver .g 1 to 2066 1 to 2065 I123L L126F W164R L232Q V444A ... tiling clone, available from DKFZ, AAA   2065/2065
(100 %)
12 diff
(99.5 %id)
DA915697 small intestine .h 1 to 824 2 to 825   tiling clone, capped   824/847
(97 %)
6 diff
(99.3 %id)
DB331506 small intestine .h 1330 to 1793 462 to 1   tiling clone,   462/502
(92 %)
4 diff
(99.3 %id)
AK302381 testis .i 1 to 1443 1 to 1443 Y58C V309I tiling clone,   1443/1443
(100 %)
4 diff
(99.8 %id)
DC399873 testis .i 1 to 538 1 to 538       538/538
(100 %)
3 diff
(99.5 %id)
DR423208 eye, Pterygium .j 1 to 679 6 to 684 exact tiling clone,   684/684
(100 %)
2 diff
(99.8 %id)
DA044818 bladder .j 1 to 520 2 to 522   tiling clone, capped   521/521
(100 %)
1 diff
(99.9 %id)
DC392207 stomach .k 1 to 532 1 to 532 C3R tiling clone,   532/532
(100 %)
2 diff
(99.7 %id)
AK301288 stomach Gene SLC44A3, variant not shown         This clone was ignored    
DB309806 hippocampus Gene SLC44A3, variant not shown              
DA334325 hippocampus Gene SLC44A3, variant not shown       capped      
AI955863 adenocarcinoma, Pancreas Gene SLC44A3, variant not shown              
BP276178 Kidney Gene SLC44A3, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C