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Gene C2orf55TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
85 supporting clones for gene C2orf55 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BX461828 brain, fetal brain .a 1 to 922 1 to 922   tiling clone,   922/922
(100 %)
6 diff
(99.4 %id)
BX435608 brain, fetal brain .a 3198 to 3954 762 to 1   tiling clone,   762/837
(91 %)
29 diff
(96.6 %id)
BM922097 pooled brain, lung, testis .b 1 to 853 1 to 861   tiling clone,   861/1012
(85 %)
12 diff
(98.9 %id)
DB478420 hippocampus .b 19 to 485 1 to 467       467/467
(100 %)
1 diff
(99.8 %id)
NM_207362.2   .b 19 to 3887 1 to 3869 exact RefSeq, AAA   3869/3869
(100 %)
0 diff
(100 %id)
BG704765 brain, hippocampus .b 20 to 381 1 to 362       362/554
(65 %)
7 diff
(98.8 %id)
BI544522 brain, hippocampus .b 20 to 512 1 to 495       495/495
(100 %)
16 diff
(96.8 %id)
TI_44000476   .b 20 to 873 86 to 942       855/942
(90 %)
37 diff
(96.1 %id)
BX420170 brain, fetal brain .b 24 to 853 1 to 828       828/828
(100 %)
6 diff
(99.3 %id)
BC068277 Brain, hippocampus .b 25 to 3887 1 to 3865 A504G A505R S506Q E507R P509H ... tiling clone, available from MGC, AAA   3865/3865
(100 %)
3 diff
(100.0 %id)
BM548365 brain, hippocampus .b 27 to 551 15 to 539       525/1201
(43 %)
14 diff
(98.9 %id)
TI_57220932   .b 57 to 898 63 to 903       841/903
(93 %)
12 diff
(98.7 %id)
BM547033 brain, hippocampus .b 58 to 686 20 to 648       629/1149
(54 %)
17 diff
(98.6 %id)
BI758336 brain .b 62 to 898 1 to 836       836/836
(100 %)
7 diff
(99.2 %id)
TI_57218917   .b 63 to 1008 34 to 980       947/981
(96 %)
28 diff
(97.2 %id)
BI754038 brain .b 64 to 1008 1 to 946       946/947
(99 %)
24 diff
(97.5 %id)
BM544372 brain, hippocampus .b 154 to 1194 1 to 1044       1044/1046
(99 %)
14 diff
(98.7 %id)
CK903802 Islets of Langerhans, Pancreas .b 388 to 968 1 to 581       581/581
(100 %)
0 diff
(100 %id)
BI964182 Islets of Langerhans, Pancreas .b 402 to 939 1 to 538       538/538
(100 %)
0 diff
(100 %id)
BI559692 testis .b 2148 to 2979 1 to 834       834/834
(100 %)
18 diff
(97.9 %id)
TI_44347952   .b 2154 to 2979 93 to 920       828/920
(90 %)
16 diff
(98.3 %id)
BF056038 pooled germ cell tumors .b 2281 to 2856 1 to 576     Submitted on the opposite strand 576/576
(100 %)
0 diff
(100 %id)
TI_57217275   .b 2288 to 3084 62 to 862       801/864
(92 %)
16 diff
(98.2 %id)
BI754779 brain .b 2295 to 3084 1 to 794       794/796
(99 %)
11 diff
(98.7 %id)
AI611137 pooled germ cell tumors .b 2303 to 2784 1 to 482     Submitted on the opposite strand 482/482
(100 %)
0 diff
(100 %id)
AI831689 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .b 2303 to 2789 1 to 487     Submitted on the opposite strand 487/487
(100 %)
0 diff
(100 %id)
AI926989 normal prostate, Prostate .b 2303 to 2884 1 to 583     Submitted on the opposite strand 583/583
(100 %)
3 diff
(99.5 %id)
BE855744 brain, glioblastoma (pooled) .b 2330 to 2813 1 to 484     Submitted on the opposite strand 484/484
(100 %)
0 diff
(100 %id)
BF939689 brain, glioblastoma (pooled) .b 2331 to 2863 1 to 534   tiling clone, Submitted on the opposite strand 534/534
(100 %)
1 diff
(99.9 %id)
CV425708 nervous_normal .b 2721 to 2898 22 to 193       172/193
(89 %)
18 diff
(90.7 %id)
TI_149300278   .b 2934 to 3887 1020 to 87   AAA   934/944
(98 %)
26 diff
(97.3 %id)
TI_154054994   .b 2993 to 3887 973 to 85   AAA   886/992
(89 %)
10 diff
(99.0 %id)
AW896259 nervous_normal .b 3005 to 3168 1 to 164       164/176
(93 %)
5 diff
(97.2 %id)
AA973465 carcinoid, lung .b 3009 to 3531 8 to 526     Submitted on the opposite strand 519/529
(98 %)
14 diff
(97.4 %id)
TI_149301141   .b 3058 to 3887 910 to 86   AAA   825/948
(87 %)
18 diff
(98.2 %id)
TI_149305596   .b 3084 to 3887 890 to 88   AAA   803/965
(83 %)
2 diff
(99.8 %id)
BF934806 nervous_tumor .b 3120 to 3499 381 to 2     Submitted on the opposite strand 380/381
(99 %)
0 diff
(100 %id)
BM976375 lung, Primary Lung Cystic Fibrosis EpithelialCells .b 3120 to 3887 785 to 19   AAA   767/767
(100 %)
1 diff
(99.9 %id)
CA418525 Chondrosarcoma Grade II, Left Pelvis .b 3120 to 3887 783 to 18   AAA   766/766
(100 %)
2 diff
(99.8 %id)
BU685924 lung, Primary Lung Epithelial Cells .b 3152 to 3887 754 to 19   AAA   736/736
(100 %)
0 diff
(100 %id)
CA311152 Human Lung Epithelial cells, lung .b 3205 to 3887 701 to 19   AAA   683/683
(100 %)
1 diff
(99.9 %id)
CV570096 cornea, eye .b 3240 to 3881 643 to 1     Submitted on the opposite strand 643/643
(100 %)
1 diff
(99.9 %id)
AW249666 lung, small cell carcinoma .b 3284 to 3887 614 to 11   AAA   604/604
(100 %)
2 diff
(99.7 %id)
TI_149311089   .b 3316 to 3887 688 to 117       572/1039
(55 %)
0 diff
(100 %id)
BQ380239 uterus_tumor .b 3328 to 3713 390 to 3       388/390
(99 %)
0 diff
(100 %id)
TI_149283444   .b 3339 to 3887 634 to 86   AAA   549/717
(76 %)
1 diff
(99.9 %id)
CB850904 lung, Primary Lung Cystic Fibrosis EpithelialCells .b 3346 to 3887 561 to 19   AAA   543/543
(100 %)
2 diff
(99.7 %id)
BM977300 lung, Primary Lung Epithelial Cells .b 3349 to 3887 557 to 19   AAA   539/539
(100 %)
9 diff
(98.4 %id)
FN137234 breast carcinoma .b 3357 to 3423 1 to 67       67/68
(98 %)
1 diff
(98.6 %id)
BF446897 Prostate .b 3360 to 3887 532 to 5       528/532
(99 %)
0 diff
(100 %id)
BF376202 testis_normal .b 3368 to 3605 240 to 1       240/241
(99 %)
9 diff
(96.3 %id)
BM967172 Islets of Langerhans, Pancreas .b 3374 to 3534 1 to 162   fully sequenced,   162/162
(100 %)
0 diff
(100 %id)
BM967323 Islets of Langerhans, Pancreas .b 3374 to 3887 1 to 515   fully sequenced, AAA   515/515
(100 %)
1 diff
(99.9 %id)
W56462 parathyroid gland, parathyroid tumor .b 3397 to 3881 487 to 1     Submitted on the opposite strand 487/493
(98 %)
8 diff
(98.4 %id)
BX115511 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .b 3416 to 3887 486 to 15   AAA   472/472
(100 %)
2 diff
(99.6 %id)
AA082179   .b 3422 to 3880 460 to 1     Submitted on the opposite strand 460/461
(99 %)
4 diff
(99.2 %id)
AW271488 Kidney .b 3433 to 3886 454 to 1       454/454
(100 %)
0 diff
(100 %id)
AI681365 carcinoid, lung .b 3434 to 3887 457 to 4       454/457
(99 %)
0 diff
(100 %id)
DB530546 hippocampus .b 3454 to 3885 1 to 430     Submitted on the opposite strand 430/431
(99 %)
24 diff
(94.5 %id)
AI273392 adenocarcinoma, colon .b 3454 to 3887 434 to 1       434/434
(100 %)
0 diff
(100 %id)
DB547069 hippocampus .b 3486 to 3888 1 to 405     Submitted on the opposite strand 405/405
(100 %)
3 diff
(99.3 %id)
AI251837 brain, tumor, 5 pooled (see description) .b 3499 to 3888 390 to 1       390/390
(100 %)
1 diff
(99.8 %id)
H30759 brain .b 3502 to 3887 386 to 1     Submitted on the opposite strand 386/386
(100 %)
0 diff
(100 %id)
BM893855 Islets of Langerhans, Pancreas .b 3504 to 3891 388 to 1   fully sequenced,   388/388
(100 %)
5 diff
(98.8 %id)
AA644006 colon, colon tumor RER+ .b 3511 to 3887 377 to 1       377/377
(100 %)
0 diff
(100 %id)
FN164236 breast carcinoma .b 3541 to 3628 1 to 90       90/94
(95 %)
3 diff
(96.9 %id)
AI201053   .b 3545 to 3887 347 to 5       343/347
(98 %)
0 diff
(100 %id)
AI926027 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .b 3547 to 3887 342 to 1       342/343
(99 %)
1 diff
(99.8 %id)
FN124312 breast carcinoma .b 3555 to 3640 1 to 87       87/88
(98 %)
5 diff
(94.4 %id)
DB532656 hippocampus .b 3569 to 3887 1 to 319     Submitted on the opposite strand 319/319
(100 %)
10 diff
(96.9 %id)
AA706017 heart .b 3589 to 3887 319 to 21   AAA   299/299
(100 %)
4 diff
(98.7 %id)
FN143224 breast carcinoma .b 3605 to 3692 85 to 1     Submitted on the opposite strand 85/85
(100 %)
4 diff
(95.3 %id)
C00205   .b 3636 to 3887 1 to 252       252/252
(100 %)
2 diff
(99.3 %id)
BF095917 uterus_tumor .b 3640 to 3781 1 to 140       140/143
(97 %)
5 diff
(96.6 %id)
BM893973 Islets of Langerhans, Pancreas .b 3655 to 3891 237 to 1   fully sequenced,   237/237
(100 %)
4 diff
(98.4 %id)
AW013950   .b 3704 to 3887 202 to 19   AAA   184/184
(100 %)
1 diff
(99.5 %id)
BX357034 Placenta Cot 25-normalized .c 1 to 1011 1 to 998   tiling clone,   998/1002
(99 %)
26 diff
(97.5 %id)
BX403364 Placenta Cot 25-normalized .c 1 to 836 1 to 837   tiling clone,   837/837
(100 %)
16 diff
(98.1 %id)
BI771903 pooled lung and spleen .d 1 to 735 1 to 740 K39Q K40E S42I K43* tiling clone,   740/742
(99 %)
19 diff
(97.5 %id)
TI_57182419   .d 1 to 735 38 to 777 K39Q K40E S42I K43*     740/779
(94 %)
23 diff
(97.1 %id)
AI394707 B-cell, chronic lymphotic leukemia .e 1 to 489 1 to 489 exact tiling clone, Submitted on the opposite strand 489/489
(100 %)
0 diff
(100 %id)
BG036854 brain, hippocampus .f 1 to 659 1 to 658 E3G tiling clone,   658/912
(72 %)
7 diff
(99.3 %id)
DR421696 eye, Pterygium .g-u 1 to 765 1 to 765 exact tiling clone,   765/765
(100 %)
2 diff
(99.8 %id)
BX101894 2 pooled tumors (clear cell type), Kidney .h 1 to 468 1 to 468 exact tiling clone,   468/468
(100 %)
0 diff
(100 %id)
AA746215 2 pooled tumors (clear cell type), Kidney .h 255 to 641 423 to 36   tiling clone,   388/423
(91 %)
0 diff
(100 %id)
BI915924 brain .i 1 to 873 1 to 880 T45N I46H V48G S49L V50C ... tiling clone,   880/892
(98 %)
17 diff
(98.1 %id)
TI_57238903   .i 1 to 873 34 to 913 T45N I46H V48G S49L V50C ...     880/925
(95 %)
23 diff
(97.6 %id)
BM984081 lung, Primary Lung Epithelial Cells Gene C2orf55, variant not shown       AAA This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g-u, .h, .i Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC