To see this page, please, enable javaScript and styleSheets on your browser: Tools -> Internet Options ...
Reload !
Gene MGC42105TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
64 supporting clones for gene MGC42105 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA168584 amygdala .a 1 to 302 2 to 303   tiling clone, capped   302/302
(100 %)
0 diff
(100 %id)
DA778478 brain .a 15 to 597 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
BP311221 brain .a 159 to 741 1 to 583       583/583
(100 %)
3 diff
(99.5 %id)
BG709047 brain, hypothalamus .a 166 to 876 1 to 711       711/712
(99 %)
8 diff
(98.9 %id)
BC036422 Brain, hypothalamus .a 171 to 2482 1 to 2312 exact tiling clone, available from MGC, AAA   2312/2312
(100 %)
3 diff
(99.9 %id)
DB484339 hypothalamus .a 171 to 611 1 to 441       441/441
(100 %)
1 diff
(99.8 %id)
DB498651 hypothalamus .a 171 to 660 1 to 490       490/490
(100 %)
1 diff
(99.8 %id)
DB505773 hypothalamus .a 171 to 676 1 to 506       506/506
(100 %)
1 diff
(99.9 %id)
NM_153361.2   .a 171 to 2482 1 to 2312 exact RefSeq, AAA   2312/2312
(100 %)
3 diff
(99.9 %id)
DA256867 caudate nucleus .a 175 to 741 2 to 568   capped   567/567
(100 %)
1 diff
(99.9 %id)
DA310871 hippocampus .a 175 to 737 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
DA296108 hippocampus .a 214 to 770 2 to 559   capped   556/558
(99 %)
3 diff
(99.5 %id)
DA209148 brain .a 261 to 825 2 to 566   capped   565/565
(100 %)
1 diff
(99.9 %id)
BM686574 eye, optic nerve .a 490 to 1110 9 to 628       620/628
(98 %)
6 diff
(99.1 %id)
BX112667 whole brain .a 556 to 1049 1 to 495       495/495
(100 %)
3 diff
(99.4 %id)
R59486 whole brain .a 558 to 982 1 to 428       428/436
(98 %)
12 diff
(97.3 %id)
R54269 whole brain .a 558 to 995 1 to 444       444/451
(98 %)
13 diff
(97.2 %id)
R53676 whole brain .a 558 to 961 1 to 409       409/435
(94 %)
10 diff
(97.8 %id)
BQ673362 epidermoid carcinoma, cell line, salivary gland .a 742 to 1610 1 to 877   tiling clone,   877/917
(95 %)
20 diff
(97.9 %id)
CV024796 mixed .a 1052 to 1755 1 to 702       702/706
(99 %)
4 diff
(99.5 %id)
TI_1948128204   .a 1052 to 1858 134 to 952       819/1176
(69 %)
30 diff
(97.5 %id)
TI_1948128538   .a 1052 to 1612 124 to 684       561/1128
(49 %)
12 diff
(99.0 %id)
TI_1948128539   .a 1052 to 1833 130 to 913       784/1178
(66 %)
16 diff
(98.7 %id)
TI_1948128881   .a 1052 to 1705 128 to 778       651/1107
(58 %)
19 diff
(98.3 %id)
TI_1948129201   .a 1052 to 1708 134 to 791       658/1171
(56 %)
28 diff
(97.7 %id)
TI_1948129202   .a 1052 to 1767 137 to 861       725/1291
(56 %)
16 diff
(98.8 %id)
TI_1948128540   .a 1608 to 2361 877 to 128       750/1331
(56 %)
0 diff
(100 %id)
TI_1948129204   .a 1608 to 2361 885 to 124       762/1075
(70 %)
0 diff
(100 %id)
TI_1948128883   .a 1612 to 2361 885 to 125       761/1490
(51 %)
0 diff
(100 %id)
TI_1948129203   .a 1612 to 2361 874 to 124       751/1369
(54 %)
0 diff
(100 %id)
TI_1948128206   .a 1635 to 2361 859 to 126       734/1100
(66 %)
0 diff
(100 %id)
BQ635881 eye, retina .a 1641 to 2227 1 to 587       587/587
(100 %)
1 diff
(99.9 %id)
TI_1948128884   .a 1766 to 2361 724 to 130       595/1044
(56 %)
0 diff
(100 %id)
TI_1948128541   .a 1810 to 2361 681 to 128       554/1087
(50 %)
0 diff
(100 %id)
BQ447856 Knee, Osteoarthritic Cartilage .a 1886 to 2481 614 to 19   AAA   596/596
(100 %)
0 diff
(100 %id)
DB326116 brain .a 1935 to 2482 549 to 1       549/549
(100 %)
1 diff
(99.9 %id)
BF222940 pooled germ cell tumors .a 1942 to 2482 541 to 1       541/548
(98 %)
7 diff
(98.8 %id)
DB569726 hypothalamus .a 1956 to 2482 1 to 527     Submitted on the opposite strand 527/527
(100 %)
2 diff
(99.7 %id)
BE551926 pooled germ cell tumors .a 1969 to 2482 514 to 1       514/514
(100 %)
0 diff
(100 %id)
AI609751 brain, glioblastoma (pooled) .a 1974 to 2483 514 to 5   tiling clone,   510/514
(99 %)
0 diff
(100 %id)
DB577061 hypothalamus .a 1994 to 2482 1 to 489     Submitted on the opposite strand 489/489
(100 %)
0 diff
(100 %id)
AI949037 pooled germ cell tumors .a 2000 to 2482 483 to 1       483/483
(100 %)
2 diff
(99.6 %id)
AW138653   .a 2003 to 2482 497 to 18   AAA   480/480
(100 %)
3 diff
(99.4 %id)
R53564 whole brain .a 2018 to 2483 484 to 9       476/487
(97 %)
0 diff
(100 %id)
DB553275 hypothalamus .a 2042 to 2482 1 to 440     Submitted on the opposite strand 440/440
(100 %)
1 diff
(99.8 %id)
BU727953 eye, optic nerve .a 2043 to 2482 458 to 19   AAA   440/440
(100 %)
1 diff
(99.8 %id)
DB548221 hippocampus .a 2057 to 2480 1 to 424     Submitted on the opposite strand 424/426
(99 %)
1 diff
(99.8 %id)
DB547081 hippocampus .a 2062 to 2480 1 to 419     Submitted on the opposite strand 419/421
(99 %)
1 diff
(99.8 %id)
AI335850 pooled germ cell tumors .a 2076 to 2482 418 to 12   AAA   407/407
(100 %)
0 diff
(100 %id)
R59487 whole brain .a 2123 to 2483 374 to 9       366/386
(94 %)
0 diff
(100 %id)
R51877 whole brain .a 2123 to 2482 379 to 11   AAA   369/377
(97 %)
10 diff
(97.4 %id)
AA912775 pooled .a 2158 to 2483 329 to 4       326/329
(99 %)
0 diff
(100 %id)
AW138655   .a 2163 to 2482 337 to 18   AAA   320/320
(100 %)
0 diff
(100 %id)
CB995976 placenta, pre-eclamptic placenta .b 1 to 773 29 to 810   tiling clone,   787/837
(94 %)
16 diff
(98.1 %id)
CB996536 placenta, pre-eclamptic placenta .b 1 to 496 29 to 524       501/606
(82 %)
10 diff
(98.4 %id)
CB997450 placenta, pre-eclamptic placenta .b 1 to 783 29 to 821       798/825
(96 %)
21 diff
(97.5 %id)
CB990247 Human Placenta, placenta .b 1 to 731 29 to 772       749/772
(97 %)
6 diff
(99.3 %id)
AK122985 amygdala .b 585 to 3513 1 to 2929 exact tiling clone, available from FLJ,   2929/2929
(100 %)
2 diff
(100.0 %id)
DA152232 amygdala .b 586 to 933 2 to 349   capped   348/348
(100 %)
0 diff
(100 %id)
DA388614 thalamus .b 586 to 1145 2 to 561   capped   560/560
(100 %)
1 diff
(99.9 %id)
DB301761 amygdala .b 2975 to 3513 539 to 1       539/539
(100 %)
0 diff
(100 %id)
DA294484 hippocampus .c 1 to 569 2 to 570 S22L H79N tiling clone, capped   569/569
(100 %)
3 diff
(99.5 %id)
DB478430 hippocampus .c 153 to 601 1 to 449       449/449
(100 %)
1 diff
(99.8 %id)
DB479520 hippocampus .c 153 to 643 1 to 491       491/491
(100 %)
1 diff
(99.8 %id)
DN994627 brain, whole brain .c 165 to 929 1 to 765   tiling clone,   765/765
(100 %)
8 diff
(99.0 %id)
DA282299 corpus callosum .c 197 to 720 2 to 525   tiling clone, capped   524/524
(100 %)
1 diff
(99.9 %id)
TI_57217127   .d 1 to 904 37 to 942 N8K I9H I10H R11P L12P ... tiling clone,   906/942
(96 %)
13 diff
(98.7 %id)
DA350157 substantia nigra .e 1 to 554 2 to 555 exact tiling clone, capped   554/554
(100 %)
0 diff
(100 %id)
DA265325 caudate nucleus .f 1 to 515 2 to 516 exact tiling clone, capped   515/515
(100 %)
0 diff
(100 %id)
AI197835 anaplastic oligodendroglioma, brain Gene MGC42105, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C