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Gene B9D2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
71 supporting clones for gene B9D2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BQ647466 hepatocellular carcinoma, cell line, Liver .a-u 1 to 718 1 to 728   tiling clone,   728/969
(75 %)
26 diff
(97.4 %id)
BQ645865 hepatocellular carcinoma, cell line, Liver .a-u 4 to 445 1 to 445       445/1096
(40 %)
9 diff
(99.2 %id)
BG763501 melanotic melanoma, high MDR (cell line), skin .a-u 663 to 1011 473 to 813   tiling clone,   341/883
(38 %)
17 diff
(98.1 %id)
BM971457 lung .a-u 669 to 1264 615 to 17   AAA   599/601
(99 %)
4 diff
(99.4 %id)
CB241683 Human Lung Epithelial cells, lung .a-u 675 to 1264 606 to 17   tiling clone, AAA   590/590
(100 %)
1 diff
(99.9 %id)
BQ052502 blood, natural killer cells, cell line .a-u 684 to 1262 1 to 579   tiling clone, AAA   579/579
(100 %)
0 diff
(100 %id)
AA843931 parathyroid gland, parathyroid tumor .a-u 780 to 1264 493 to 11   AAA   483/483
(100 %)
6 diff
(98.8 %id)
AI743007 pooled .a-u 800 to 1267 471 to 4       468/471
(99 %)
0 diff
(100 %id)
AI097326 uterus .a-u 807 to 1262 456 to 1       456/456
(100 %)
1 diff
(99.8 %id)
BP392668 pancreatic islet .a-u 817 to 1264 1 to 448     Submitted on the opposite strand 448/448
(100 %)
1 diff
(99.8 %id)
AI129653 uterus .a-u 881 to 1263 385 to 3       383/385
(99 %)
0 diff
(100 %id)
AA452277.
matches multiple genes
  .a-u 896 to 1265 371 to 3     also hits gene storslawby 369/371
(99 %)
0 diff
(100 %id)
AI932223 anaplastic oligodendroglioma, brain .a-u 911 to 1267 371 to 15   AAA   357/357
(100 %)
4 diff
(98.9 %id)
AI471868 Kidney .a-u 927 to 1267 358 to 20   tiling clone, AAA   339/340
(99 %)
11 diff
(96.8 %id)
AW207114   .a-u 943 to 1264 339 to 18   AAA   322/336
(95 %)
2 diff
(99.5 %id)
CB050841 Prostate .a-u 964 to 1262 328 to 30   AAA   299/299
(100 %)
2 diff
(99.4 %id)
AI498322 Kidney .a-u 969 to 1262 294 to 1       294/294
(100 %)
2 diff
(99.4 %id)
BF438399 Prostate .a-u 990 to 1263 274 to 1       274/274
(100 %)
1 diff
(99.7 %id)
BF511435   .a-u 999 to 1262 281 to 18   AAA   264/264
(100 %)
3 diff
(98.9 %id)
AW518214 lymph node, lymphoma, follicular mixed small and largecell .a-u 1042 to 1263 223 to 2       222/223
(99 %)
0 diff
(100 %id)
CD242596 brain, Pituitary .a-u 1067 to 1262 24 to 219   AAA   196/219
(89 %)
6 diff
(97.3 %id)
AI972225 Prostate .a-u 1075 to 1263 189 to 1       189/189
(100 %)
0 diff
(100 %id)
BF364906 nervous_normal .b 1 to 579 1 to 577   tiling clone,   577/577
(100 %)
6 diff
(99.0 %id)
NM_030578.3   .b 1 to 1031 1 to 1031 exact RefSeq, AAA   1031/1031
(100 %)
0 diff
(100 %id)
BQ900587 brain, neuroblastoma, cell line .b 5 to 582 72 to 654   tiling clone,   583/1369
(42 %)
20 diff
(98.6 %id)
N88663   .b 22 to 236 1 to 219       219/219
(100 %)
12 diff
(94.6 %id)
DT220852 brain .b 28 to 722 1 to 695       695/695
(100 %)
4 diff
(99.5 %id)
BQ427546 melanotic melanoma, skin .b 28 to 804 1 to 783 G117X D138G T139H I140H Y141L ...     783/850
(92 %)
10 diff
(98.9 %id)
CB128896 Liver .b 28 to 559 1 to 532       532/532
(100 %)
2 diff
(99.7 %id)
BP316851 pericardium .b 28 to 609 1 to 583       583/583
(100 %)
7 diff
(98.8 %id)
BM820125 stomach .b 28 to 210 1 to 183       183/183
(100 %)
3 diff
(98.4 %id)
BM833644 stomach .b 28 to 482 1 to 455       455/455
(100 %)
0 diff
(100 %id)
BF526054 brain, glioblastoma with EGFR amplification .b 32 to 650 1 to 632       632/1003
(63 %)
30 diff
(97.1 %id)
TI_57176135   .b 36 to 800 59 to 820 I11M L116W G117A S118V W119G ...     762/820
(92 %)
11 diff
(98.7 %id)
AW247444 lung, small cell carcinoma .b 38 to 560 6 to 528   fully sequenced,   523/528
(99 %)
7 diff
(98.7 %id)
AW246164 lung, small cell carcinoma .b 38 to 176 6 to 144       139/144
(96 %)
6 diff
(95.9 %id)
BC004157 Lung, small cell carcinoma .b 42 to 1026 1 to 985 I11M tiling clone, available from MGC, AAA   985/985
(100 %)
1 diff
(99.9 %id)
BC004444 Lung, small cell carcinoma .b 42 to 1026 1 to 985   available from MGC, AAA   985/985
(100 %)
1 diff
(99.9 %id)
BX280308 pooled pancreas and spleen .b 42 to 565 22 to 545       524/545
(96 %)
7 diff
(98.8 %id)
AA452448.
matches multiple genes
  .b 42 to 526 1 to 484     also hits gene jyser 484/484
(100 %)
3 diff
(99.4 %id)
BI829218 brain, medulla .b 42 to 800 1 to 756 I11M L116W G117A S118V W119G ...     756/756
(100 %)
5 diff
(99.4 %id)
TI_57166963   .b 42 to 890 30 to 878 I11M L149P H150A T151H A152S ...     849/878
(96 %)
16 diff
(98.2 %id)
CR749084 brain .b 46 to 545 1 to 501       501/501
(100 %)
3 diff
(99.5 %id)
BM797302 Ascites, stomach .b 46 to 557 1 to 512       512/512
(100 %)
1 diff
(99.9 %id)
BM020284 astrocytoma grade IV, cell line, brain .b 47 to 818 1 to 774 I11M C97X G117W S118Q W119L ...     774/776
(99 %)
8 diff
(99.0 %id)
BI820173 pooled brain, lung, testis .b 48 to 849 1 to 800 exact tiling clone,   800/800
(100 %)
4 diff
(99.5 %id)
TI_57199585   .b 48 to 849 72 to 871 exact     800/871
(91 %)
10 diff
(98.9 %id)
TI_59391068   .b 48 to 818 101 to 873 I11M C97X G117W S118Q W119L ...     773/775
(99 %)
7 diff
(99.1 %id)
BI833871 pooled pancreas and spleen .b 49 to 890 1 to 842 I11M L149P H150A T151H A152S ...     842/842
(100 %)
10 diff
(98.9 %id)
BM923726 pooled colon, kidney, stomach .b 49 to 836 1 to 792 I11M     792/1056
(75 %)
11 diff
(99.0 %id)
BE389785 endometrium, adenocarcinoma cell line, uterus .b 61 to 744 1 to 680       680/708
(96 %)
22 diff
(96.9 %id)
BE794701 lung, small cell carcinoma .b 67 to 856 1 to 780 L163C L164C L165S R166A N167I ...     780/1027
(75 %)
21 diff
(98.0 %id)
BM713204 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 70 to 690 1 to 621       621/621
(100 %)
2 diff
(99.7 %id)
TI_1948144311   .b 220 to 750 128 to 658 I11M H136D D169R Y171* fully sequenced,   531/658
(80 %)
17 diff
(97.5 %id)
TI_1948144554   .b 220 to 754 126 to 659 I11M N167I E174S C175A     534/577
(92 %)
13 diff
(97.8 %id)
CV025994 mixed .b 221 to 754 1 to 534 I11M     534/627
(85 %)
6 diff
(99.1 %id)
BU609059 Human Lung Epithelial cells, lung .b 288 to 1031 756 to 19   AAA   738/738
(100 %)
5 diff
(99.4 %id)
TI_159723629   .b 300 to 1026 792 to 71   AAA   722/951
(75 %)
9 diff
(99.1 %id)
CA945159 Human Lung Epithelial cells, lung .b 312 to 1026 729 to 19   AAA   711/711
(100 %)
4 diff
(99.5 %id)
TI_149285634   .b 340 to 1028 774 to 87   AAA   688/688
(100 %)
12 diff
(98.3 %id)
BQ576019 Chondrosarcoma Grade II, Left Pelvis .b 347 to 1031 700 to 19   AAA   682/682
(100 %)
6 diff
(99.2 %id)
TI_1948144312   .b 357 to 754 521 to 124   fully sequenced,   398/521
(76 %)
0 diff
(100 %id)
CB529481 Aveolar Macrophage, lung .b 390 to 1026 655 to 19   AAA   637/637
(100 %)
1 diff
(99.9 %id)
BM666419 eye, optic nerve .b 391 to 1030 658 to 19   AAA   640/640
(100 %)
2 diff
(99.7 %id)
BQ575046 Chondrosarcoma Grade II, Left Pelvis .b 409 to 1026 636 to 19   AAA   618/618
(100 %)
0 diff
(100 %id)
BQ009155 Chondrosarcoma, Left Pubic Bone .b 418 to 1026 627 to 19   AAA   609/609
(100 %)
5 diff
(99.2 %id)
AW247300 lung, small cell carcinoma .b 530 to 1026 507 to 11   fully sequenced, AAA   497/497
(100 %)
0 diff
(100 %id)
TI_154189750   .c 1 to 847 45 to 879 exact     835/992
(84 %)
21 diff
(97.9 %id)
CF126641 Chondrosarcoma Lung Metastasis cell lines, lung .c 4 to 847 1 to 832 exact tiling clone,   832/846
(98 %)
20 diff
(97.7 %id)
BF826231 head_normal .d-u 1 to 442 106 to 547 W6G W10G W14G F36L C46G tiling clone,   487/547
(89 %)
23 diff
(95.8 %id)
BE045623 carcinoid, lung .e 1 to 418 418 to 1 exact tiling clone,   418/418
(100 %)
1 diff
(99.8 %id)
AA594941 Prostate, prostate tumor .e 12 to 385 1 to 373     Submitted on the opposite strand 373/373
(100 %)
4 diff
(99.0 %id)
AW301661 Kidney .e 35 to 421 388 to 1   tiling clone,   388/388
(100 %)
5 diff
(98.8 %id)
? Gene Summary Gene on genome mRNA:.a-u, .b, .c, .d-u, .e Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC