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Gene CLEC18CTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
62 supporting clones for gene CLEC18C back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BC078143.
matches multiple genes
Colon, Kidney, Stomach, adult, whole pooled .a 1 to 1834 1 to 1834 I91T A118V F273L tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base), also hits gene CLEC18A 1834/1834
(100 %)
7 diff
(99.7 %id)
DA701654.
matches multiple genes
  .a 32 to 507 2 to 477   capped also hits gene CLEC18B 476/476
(100 %)
3 diff
(99.4 %id)
DB060376.
matches multiple genes
testis .a 38 to 503 2 to 467   capped also hits gene CLEC18A, CLEC18B 466/466
(100 %)
6 diff
(98.8 %id)
DA630999.
matches multiple genes
Kidney .a 43 to 619 2 to 579   capped also hits gene CLEC18A, CLEC18B 578/578
(100 %)
7 diff
(98.8 %id)
DB038718.
matches multiple genes
testis .a 44 to 622 2 to 580   capped also hits gene CLEC18B 579/579
(100 %)
4 diff
(99.4 %id)
AK074773.
matches multiple genes
  .a 49 to 1834 1 to 1786 I91T L100P tiling clone, available from FLJ, also hits gene CLEC18A 1786/1786
(100 %)
6 diff
(99.7 %id)
DA732109.
matches multiple genes
  .a 50 to 557 2 to 512   capped also hits gene CLEC18A, CLEC18B 511/511
(100 %)
16 diff
(96.9 %id)
DB037082 testis .a 57 to 630 2 to 575   tiling clone, capped   574/574
(100 %)
1 diff
(99.9 %id)
TI_57220334.
matches multiple genes
  .a 72 to 801 33 to 761     also hits gene CLEC18A 729/971
(75 %)
23 diff
(97.7 %id)
BI760121.
matches multiple genes
pooled colon, kidney, stomach .a 201 to 911 1 to 710     also hits gene CLEC18A 710/710
(100 %)
8 diff
(98.9 %id)
BX280233 pooled colon, kidney, stomach .a 222 to 722 1 to 501       501/501
(100 %)
0 diff
(100 %id)
BC062573 Colon, Kidney, Stomach, adult, whole pooled .a 222 to 1834 1 to 1612   available from MGC, AAA   1612/1612
(100 %)
1 diff
(100.0 %id)
BI764403 pooled colon, kidney, stomach .a 222 to 1056 1 to 836   available from MGC,   836/836
(100 %)
16 diff
(98.1 %id)
TI_57148865.
matches multiple genes
  .a 222 to 1056 29 to 864     also hits gene CLEC18A 836/864
(96 %)
22 diff
(97.5 %id)
TI_1948075270   .a 234 to 910 129 to 811       683/1315
(51 %)
32 diff
(97.6 %id)
CV029633 mixed .a 235 to 816 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
TI_1948075006   .a 239 to 1137 133 to 1039       907/1255
(72 %)
50 diff
(96.1 %id)
CF272668.
matches multiple genes
  .a 262 to 826 1 to 567     also hits gene CLEC18A 567/567
(100 %)
7 diff
(98.8 %id)
TI_1948232039.
matches multiple genes
  .a 436 to 1460 1157 to 128     also hits gene CLEC18A 1030/1266
(81 %)
34 diff
(97.4 %id)
TI_1948232342.
matches multiple genes
  .a 575 to 1460 1014 to 125     also hits gene CLEC18A 890/1361
(65 %)
14 diff
(99.0 %id)
AL040183.
matches multiple genes
testis .a 655 to 1361 1 to 704   tiling clone, also hits gene CLEC18A, CLEC18B 704/704
(100 %)
16 diff
(97.8 %id)
TI_1948232931.
matches multiple genes
  .a 672 to 1460 909 to 122     also hits gene CLEC18A 788/1270
(62 %)
7 diff
(99.5 %id)
BM695392.
matches multiple genes
eye, optic nerve .a 710 to 1354 1 to 645     also hits gene CLEC18A, CLEC18B 645/645
(100 %)
0 diff
(100 %id)
CD673170.
matches multiple genes
eye, Iris .a 729 to 1227 1 to 499     also hits gene CLEC18A, CLEC18B 499/499
(100 %)
1 diff
(99.8 %id)
TI_1948232038   .a 863 to 1460 722 to 121       601/1189
(50 %)
18 diff
(98.5 %id)
TI_57150738   .b 1 to 850 31 to 888   tiling clone,   858/888
(96 %)
26 diff
(97.1 %id)
AF448856   .b 7 to 1976 1 to 1969 M69R Q80N L81W A82L Q83K ... tiling clone,   1969/1969
(100 %)
37 diff
(98.2 %id)
BI762690 pooled colon, kidney, stomach .b 7 to 850 1 to 852   tiling clone,   852/852
(100 %)
21 diff
(97.6 %id)
NM_173619.2   .b 7 to 1974 1 to 1968 exact RefSeq, AAA   1968/1968
(100 %)
1 diff
(100.0 %id)
DA539173 Kidney .b 75 to 657 2 to 584   tiling clone, capped   583/586
(99 %)
1 diff
(99.9 %id)
DA621596.
matches multiple genes
Kidney .b 77 to 592 2 to 518   capped This clone was ignored, also hits gene CLEC18A, CLEC18B 517/517
(100 %)
5 diff
(99.1 %id)
BI759120.
matches multiple genes
pooled colon, kidney, stomach .b 92 to 801 1 to 709   tiling clone, also hits gene CLEC18A 709/709
(100 %)
7 diff
(99.1 %id)
DB041327.
matches multiple genes
testis .b 114 to 662 2 to 552   capped also hits gene CLEC18A 551/551
(100 %)
6 diff
(99.0 %id)
TI_57146335.
matches multiple genes
  .b 131 to 936 78 to 895   tiling clone, also hits gene CLEC18A 818/981
(83 %)
36 diff
(96.4 %id)
BF057185.
matches multiple genes
pooled germ cell tumors .b 1365 to 1976 612 to 1   tiling clone, also hits gene CLEC18A, CLEC18B 612/612
(100 %)
4 diff
(99.4 %id)
AI433291 Kidney .b 1481 to 1974 494 to 1   tiling clone,   494/494
(100 %)
0 diff
(100 %id)
AI150446.
matches multiple genes
  .b 1533 to 1974 460 to 19   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base), also hits gene CLEC18A, CLEC18B 442/442
(100 %)
11 diff
(97.6 %id)
BG150347.
matches multiple genes
pooled germ cell tumors .b 1537 to 1976 440 to 1     also hits gene CLEC18A, CLEC18B 440/447
(98 %)
2 diff
(99.6 %id)
BC039068 Colon, Kidney, Stomach, adult, whole pooled .c 1 to 2874 1 to 2874 M69R tiling clone, available from MGC, AAA   2874/2874
(100 %)
2 diff
(100.0 %id)
AK298310.
matches multiple genes
Kidney .c 165 to 1687 1 to 1523 I91T T151M tiling clone, also hits gene CLEC18A 1523/1523
(100 %)
7 diff
(99.6 %id)
TI_1948075007.
matches multiple genes
  .c 469 to 1273 942 to 125     also hits gene CLEC18A 818/1435
(57 %)
39 diff
(97.3 %id)
TI_1948075573.
matches multiple genes
  .c 470 to 1273 927 to 124   tiling clone, also hits gene CLEC18A 804/1323
(60 %)
3 diff
(99.8 %id)
TI_1948075840.
matches multiple genes
  .c 472 to 1273 933 to 126     also hits gene CLEC18A, CLEC18B 808/1383
(58 %)
17 diff
(98.8 %id)
DB222627.
matches multiple genes
trachea .c 1013 to 1554 2 to 544   tiling clone, capped also hits gene CLEC18A, CLEC18B 543/543
(100 %)
3 diff
(99.5 %id)
CN346808.
matches multiple genes
embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .c 1719 to 2204 1 to 486   tiling clone, also hits gene CLEC18A, CLEC18B 486/486
(100 %)
4 diff
(99.2 %id)
BC008616.
matches multiple genes
Brain, anaplastic oligodendroglioma with1p/19q loss .c 2029 to 3341 1 to 1313   tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base), also hits gene CLEC18A, CLEC18B 1313/1313
(100 %)
12 diff
(99.1 %id)
BE552150 Kidney .c 2471 to 2876 409 to 4       406/409
(99 %)
0 diff
(100 %id)
AA812725.
matches multiple genes
  .c 2548 to 2876 330 to 2     also hits gene CLEC18A, CLEC18B 329/330
(99 %)
0 diff
(100 %id)
AA527105.
matches multiple genes
Ewing's sarcoma .c 2618 to 2876 1 to 257     also hits gene CLEC18A, CLEC18B 257/274
(93 %)
10 diff
(96.4 %id)
AI522123 Kidney .c 2716 to 3126 425 to 16   tiling clone, AAA   410/410
(100 %)
3 diff
(99.3 %id)
AA618217.
matches multiple genes
thyroid .c 2847 to 3237 398 to 8     also hits gene CLEC18A 391/398
(98 %)
0 diff
(100 %id)
AL833339.
matches multiple genes
human testis .d 1 to 3185 8 to 3190 I91T L100P T308I tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base), also hits gene CLEC18A 3190/3190
(100 %)
16 diff
(99.5 %id)
DB081265.
matches multiple genes
testis .d 758 to 1299 2 to 541   capped also hits gene CLEC18A 540/540
(100 %)
2 diff
(99.7 %id)
DB041001.
matches multiple genes
testis .d 809 to 1356 2 to 550   tiling clone, capped also hits gene CLEC18A, CLEC18B 549/549
(100 %)
5 diff
(99.1 %id)
DC361541.
matches multiple genes
Kidney .e 1 to 541 2 to 542   tiling clone, also hits gene CLEC18A, CLEC18B 542/542
(100 %)
3 diff
(99.5 %id)
DA630572.
matches multiple genes
Kidney .e 1 to 576 2 to 577   tiling clone, capped also hits gene CLEC18A 576/576
(100 %)
2 diff
(99.7 %id)
DC361784.
matches multiple genes
Kidney .e 295 to 835 1 to 541   tiling clone, also hits gene CLEC18A, CLEC18B 541/541
(100 %)
4 diff
(99.3 %id)
DA378648.
matches multiple genes
thalamus .e 615 to 1184 2 to 572   tiling clone, capped also hits gene CLEC18A, CLEC18B 571/571
(100 %)
4 diff
(99.3 %id)
DC362064.
matches multiple genes
Kidney .f 1 to 576 1 to 576 L2P I91T L100P tiling clone, also hits gene CLEC18A, CLEC18B 576/576
(100 %)
5 diff
(99.2 %id)
DA635438.
matches multiple genes
Kidney .g 1 to 493 2 to 494 R81* tiling clone, capped also hits gene CLEC18A 493/493
(100 %)
4 diff
(99.2 %id)
DC395219.
matches multiple genes
testis .g 408 to 974 1 to 567   tiling clone, also hits gene CLEC18A, CLEC18B 567/567
(100 %)
5 diff
(99.2 %id)
TI_57148418.
matches multiple genes
  .h 1 to 452 62 to 517 W38R R41P tiling clone, also hits gene CLEC18A, CLEC18B 456/520
(87 %)
18 diff
(96.6 %id)
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C