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Gene OBFC2BTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
72 supporting clones for gene OBFC2B back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BE257171 eye, retinoblastoma .a 1 to 601 1 to 639   tiling clone,   635/723
(87 %)
58 diff
(92.0 %id)
BM810971 amelanotic melanoma, cell line, skin .a 118 to 1000 1 to 898   tiling clone,   898/1076
(83 %)
41 diff
(96.2 %id)
TI_1948155408.
matches multiple genes
  .a 148 to 689 658 to 118   tiling clone, also hits gene yahumi 541/556
(97 %)
0 diff
(100 %id)
AA411336 ovarian tumor, ovary .a 246 to 739 1 to 494       494/494
(100 %)
4 diff
(99.2 %id)
AL523272.
matches multiple genes
brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .a 258 to 1291 1020 to 2     also hits gene yahumi 1019/1023
(99 %)
16 diff
(98.5 %id)
AL539723.
matches multiple genes
brain, fetal brain .a 272 to 1170 900 to 1     also hits gene yahumi 900/904
(99 %)
71 diff
(92.2 %id)
BF686236 leiomyosarcoma cell line, uterus .a 277 to 745 1 to 469       469/469
(100 %)
2 diff
(99.6 %id)
BG831368 epithelioid carcinoma cell line, Pancreas .a 279 to 1095 1 to 834       834/960
(86 %)
9 diff
(99.1 %id)
BE734051 choriocarcinoma, placenta .a 299 to 1051 1 to 733       733/905
(80 %)
47 diff
(94.9 %id)
BX400912.
matches multiple genes
  .a 307 to 1291 992 to 16     also hits gene yahumi 977/994
(98 %)
2 diff
(99.8 %id)
BG697452 skin .a 320 to 861 1 to 556       556/853
(65 %)
69 diff
(92.0 %id)
BQ430086 epithelioid carcinoma, Pancreas .a 323 to 797 1 to 482       482/1003
(48 %)
26 diff
(97.5 %id)
BX383723   .a 330 to 1225 888 to 1       888/891
(99 %)
20 diff
(97.8 %id)
BF917650 uterus_tumor .a 354 to 563 1 to 213       213/216
(98 %)
6 diff
(97.3 %id)
BI457309 epithelioid carcinoma cell line, Pancreas .a 421 to 953 1 to 554       554/943
(58 %)
9 diff
(99.1 %id)
TI_45133541   .a 422 to 953 59 to 611       553/942
(58 %)
8 diff
(99.2 %id)
BQ669133 epidermoid carcinoma, cell line, salivary gland .a 435 to 1198 1 to 764   AAA   764/764
(100 %)
1 diff
(99.9 %id)
TI_154127451   .a 476 to 1198 787 to 62   AAA   726/960
(75 %)
19 diff
(98.1 %id)
CN256569 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 488 to 785 10 to 307       298/307
(97 %)
0 diff
(100 %id)
BU944090 adenocarcinoma, cell line, breast .a 512 to 1198 704 to 16   AAA Submitted on the opposite strand 689/950
(72 %)
9 diff
(99.1 %id)
CA417141 Chondrosarcoma Cell line .a 564 to 1198 653 to 19   AAA   635/637
(99 %)
0 diff
(100 %id)
BM990915 lung, Lung Focal Fibrosis .a 584 to 1216 633 to 1       633/633
(100 %)
7 diff
(98.9 %id)
BQ680709 melanotic melanoma, cell line, skin .a 584 to 1213 660 to 25   AAA Submitted on the opposite strand 636/910
(69 %)
10 diff
(99.0 %id)
BG939201 Bone, Hip .a 584 to 1194 618 to 8       611/618
(98 %)
0 diff
(100 %id)
CV338979 breast .a 597 to 1079 10 to 490       481/490
(98 %)
0 diff
(100 %id)
CV338980 breast .a 597 to 1079 8 to 489       482/489
(98 %)
0 diff
(100 %id)
BP395132 pancreatic islet .a 597 to 1202 1 to 607     Submitted on the opposite strand 607/607
(100 %)
2 diff
(99.7 %id)
AI174701 Liver .a 599 to 1318 1 to 714       714/716
(99 %)
9 diff
(98.8 %id)
BQ231303 embryonal carcinoma, cell line, testis .a 612 to 1318 1 to 711   tiling clone, AAA   711/711
(100 %)
7 diff
(99.1 %id)
BM990930 lung, Lung Focal Fibrosis .a 620 to 1216 597 to 1       597/597
(100 %)
5 diff
(99.2 %id)
BX096780 ovarian tumor, ovary .a 633 to 1198 1 to 566   AAA   566/566
(100 %)
0 diff
(100 %id)
AA394283 ovarian tumor, ovary .a 633 to 895 1 to 262   fully sequenced,   262/262
(100 %)
1 diff
(99.7 %id)
BG820764 anaplastic oligodendroglioma with 1p/19qloss, brain .a 659 to 1207 1 to 551       551/686
(80 %)
11 diff
(98.4 %id)
AI760850 B-cell, chronic lymphotic leukemia .a 667 to 1201 535 to 1       535/535
(100 %)
7 diff
(98.7 %id)
BM558132 astrocytoma grade IV, cell line, brain .a 685 to 1226 581 to 44     Submitted on the opposite strand 538/1155
(46 %)
0 diff
(100 %id)
AI708565 aorta .a 715 to 1198 484 to 1       484/484
(100 %)
0 diff
(100 %id)
BE707212 head_neck .a 719 to 929 1 to 212       212/212
(100 %)
9 diff
(95.8 %id)
BU955476 mixed (pool of 40 RNAs) .a 722 to 1236 1 to 507       507/513
(98 %)
12 diff
(97.7 %id)
AA401958 ovarian tumor, ovary .a 728 to 1198 470 to 1       470/470
(100 %)
1 diff
(99.8 %id)
BG111072 Bone, osteosarcoma, cell line .a 756 to 1317 1 to 553   AAA   553/553
(100 %)
6 diff
(99.0 %id)
BE785134 large cell carcinoma, lung .a 779 to 1192 1 to 414       414/414
(100 %)
0 diff
(100 %id)
AA554289 germ cell tumor .a 797 to 1291 487 to 1       487/487
(100 %)
7 diff
(98.6 %id)
AA618531 lung, lung tumor .a 797 to 1291 487 to 1       487/487
(100 %)
4 diff
(99.2 %id)
R38408 whole brain .a 804 to 1198 416 to 21   AAA   396/396
(100 %)
7 diff
(98.3 %id)
BM509931 Pancreas, Purified pancreatic islet .a 817 to 1316 493 to 1       493/493
(100 %)
4 diff
(99.2 %id)
BU500657   .a 822 to 1198 1 to 376   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 376/378
(99 %)
2 diff
(99.5 %id)
BP394697 pancreatic islet .a 829 to 1318 1 to 486     Submitted on the opposite strand 486/492
(98 %)
6 diff
(98.8 %id)
AA349923 brain .a 843 to 1198 356 to 1       356/356
(100 %)
7 diff
(98.1 %id)
BE882869 leiomyosarcoma, uterus .a 849 to 1317 1 to 465   AAA   465/465
(100 %)
7 diff
(98.5 %id)
AA411337 ovarian tumor, ovary .a 858 to 1199 342 to 1       342/342
(100 %)
1 diff
(99.8 %id)
AA293809 ovarian tumor, ovary .a 865 to 1198 334 to 1   fully sequenced,   334/334
(100 %)
2 diff
(99.5 %id)
AW731858.
matches multiple genes
lung, small cell carcinoma .a 866 to 1198 345 to 13   AAA also hits gene yahumi 333/333
(100 %)
0 diff
(100 %id)
BQ029488 lung, Metastatic Chondrosarcoma .a 867 to 1317 469 to 19   AAA   451/451
(100 %)
0 diff
(100 %id)
CR746133 lymph node, lymphoma, follicular mixed small and largecell .a 868 to 1317 456 to 15   AAA   442/442
(100 %)
4 diff
(99.1 %id)
AI038029   .a 885 to 1318 437 to 4   tiling clone,   434/437
(99 %)
0 diff
(100 %id)
AW157128.
matches multiple genes
brain, frontal lobe .a 885 to 1318 433 to 8     also hits gene yahumi 426/433
(98 %)
0 diff
(100 %id)
CN256570 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 889 to 1317 1 to 425   AAA   425/425
(100 %)
6 diff
(98.6 %id)
AI439786 lymph node, lymphoma, follicular mixed small and largecell .a 985 to 1317 325 to 1       325/325
(100 %)
4 diff
(98.8 %id)
AW188912 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .a 988 to 1317 322 to 1       322/322
(100 %)
6 diff
(98.2 %id)
AW087569 lung, cell line .a 989 to 1317 335 to 14   AAA   322/322
(100 %)
6 diff
(98.2 %id)
AI278388 placenta .a 1006 to 1317 324 to 13   AAA   312/312
(100 %)
1 diff
(99.7 %id)
BF923474 nervous_tumor .a 1083 to 1317 5 to 231   AAA   227/231
(98 %)
0 diff
(100 %id)
AI216222 carcinoid, lung .a 1083 to 1318 229 to 2       228/229
(99 %)
0 diff
(100 %id)
CN256571 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 1085 to 1317 1 to 229   AAA   229/229
(100 %)
5 diff
(97.9 %id)
CK822688 Pancreas, Purified pancreatic islet .a 1091 to 1318 227 to 7     Submitted on the opposite strand 221/227
(97 %)
0 diff
(100 %id)
BE765586 nervous_tumor .a 1124 to 1321 210 to 20   tiling clone,   191/218
(87 %)
0 diff
(100 %id)
DB555002 hypothalamus .b 1 to 450 1 to 442 A9G A10C S11L P12S E13R ... tiling clone, Submitted on the opposite strand 442/442
(100 %)
5 diff
(98.9 %id)
AV702469 adrenal gland Gene OBFC2B, variant not shown         Suspected internal deletion, this clone was ignored    
CV338965 breast Gene OBFC2B, variant not shown         This clone was ignored    
  H033060K17__1           Anomalous_clone    
  H033076J01__1           Anomalous_clone    
AI884763 anaplastic oligodendroglioma, brain Gene OBFC2B, variant not shown         Suspected internal deletion, this clone was ignored    
BQ777329 Pancreas, Purified pancreatic islet Gene OBFC2B, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes