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Gene SGMS2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
159 supporting clones for gene SGMS2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_152621.5   .a 1 to 6229 1 to 6229 exact RefSeq, AAA   6229/6229
(100 %)
0 diff
(100 %id)
DB048409 testis .a 2 to 549 2 to 549   tiling clone, capped   548/548
(100 %)
1 diff
(99.9 %id)
BC041369 testis .a 8 to 2136 1 to 2129 exact tiling clone, available from MGC, AAA   2129/2129
(100 %)
3 diff
(99.9 %id)
BI465125 testis .a 11 to 671 9 to 660       652/662
(98 %)
22 diff
(96.7 %id)
DB086984 testis .a 11 to 577 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DB026482 testis .a 12 to 567 2 to 557   capped   556/556
(100 %)
1 diff
(99.9 %id)
BI560796 testis .b 1 to 779 1 to 783   tiling clone,   783/825
(94 %)
18 diff
(97.9 %id)
TI_44349201   .b 6 to 779 88 to 865       778/907
(85 %)
21 diff
(97.7 %id)
DB450496.
matches multiple genes
testis .b 9 to 441 1 to 433     also hits gene bogee 433/433
(100 %)
0 diff
(100 %id)
NM_001136257.1   .b 32 to 5984 1 to 5953 exact RefSeq, AAA   5953/5953
(100 %)
0 diff
(100 %id)
BG723342 testis .b 37 to 650 1 to 612       612/612
(100 %)
6 diff
(99.1 %id)
BC028705 testis .b 41 to 1891 11 to 1861 exact tiling clone, available from MGC, AAA   1851/1851
(100 %)
0 diff
(100 %id)
BP371694 testis .b 41 to 623 1 to 582       582/582
(100 %)
2 diff
(99.7 %id)
AK314049 testis .b 42 to 1492 1 to 1452 exact     1452/1452
(100 %)
2 diff
(99.9 %id)
DB041844 testis .b 42 to 583 2 to 543   capped   542/542
(100 %)
2 diff
(99.7 %id)
DB020828 testis .b 43 to 514 2 to 476   capped   475/475
(100 %)
5 diff
(99.0 %id)
DB039262 testis .b 44 to 589 2 to 547   capped   546/546
(100 %)
0 diff
(100 %id)
DB044885 testis .b 44 to 599 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DB047365 testis .b 45 to 601 16 to 572   capped   557/557
(100 %)
1 diff
(99.9 %id)
DB032676 testis .b 89 to 629 2 to 543   capped   542/542
(100 %)
1 diff
(99.9 %id)
DB335859 testis .b 1366 to 1891 527 to 1       527/527
(100 %)
1 diff
(99.9 %id)
DC417367 trachea .c 1 to 564 1 to 564   tiling clone,   564/564
(100 %)
5 diff
(99.2 %id)
AK290344 tongue, tumor tissue .c 6 to 1928 1 to 1923 W313R     1923/1923
(100 %)
1 diff
(100.0 %id)
DC347366 tongue, tumor tissue .c 6 to 582 1 to 578       578/578
(100 %)
1 diff
(99.9 %id)
NM_001136258.1   .c 8 to 6152 1 to 6145 exact RefSeq, AAA   6145/6145
(100 %)
0 diff
(100 %id)
DC356048   .c 16 to 567 1 to 552       552/552
(100 %)
1 diff
(99.9 %id)
DC372655   .c 99 to 641 1 to 544       544/544
(100 %)
4 diff
(99.3 %id)
AF452717   .c 105 to 2006 1 to 1902 exact     1902/1902
(100 %)
0 diff
(100 %id)
DC300920 bladder .c 105 to 691 1 to 587       587/587
(100 %)
0 diff
(100 %id)
CB104727 Ascites, stomach .c 105 to 573 1 to 469       469/469
(100 %)
0 diff
(100 %id)
DR005551 Prostate .c 159 to 676 1 to 518       518/518
(100 %)
2 diff
(99.7 %id)
CB961077 Human Placenta, placenta .c 171 to 630 21 to 486       466/808
(57 %)
16 diff
(98.1 %id)
DC359045 lung .c 178 to 743 1 to 566       566/566
(100 %)
1 diff
(99.9 %id)
BP274325 Kidney .c 178 to 759 1 to 581       581/581
(100 %)
5 diff
(99.2 %id)
BP350971   .c 178 to 761 1 to 584       584/584
(100 %)
0 diff
(100 %id)
DC408039 thymus .c 178 to 722 1 to 545       545/545
(100 %)
0 diff
(100 %id)
DN999781   .c 203 to 867 8 to 673       666/674
(98 %)
4 diff
(99.5 %id)
BI821015 pooled brain, lung, testis .c 206 to 995 1 to 790       790/790
(100 %)
8 diff
(99.0 %id)
TI_57198486   .c 206 to 995 36 to 825       790/825
(95 %)
19 diff
(97.7 %id)
BQ081963 stomach .c 514 to 762 20 to 266       247/266
(92 %)
6 diff
(97.8 %id)
BX649142 human uterus endothel primary cell culture .c 543 to 6141 1 to 5600 exact tiling clone, available from DKFZ, AAA   5600/5600
(100 %)
1 diff
(100.0 %id)
CV024130 mixed .c 563 to 1219 1 to 654       654/654
(100 %)
5 diff
(99.3 %id)
TI_1948123309   .c 563 to 1091 128 to 656   fully sequenced,   529/656
(80 %)
6 diff
(99.1 %id)
TI_1948123485   .c 563 to 1091 130 to 658   fully sequenced,   529/658
(80 %)
6 diff
(99.1 %id)
TI_1948123821   .c 563 to 1091 126 to 654   fully sequenced,   529/654
(80 %)
7 diff
(99.0 %id)
BX504685   .c 595 to 1195 1 to 601       601/601
(100 %)
3 diff
(99.6 %id)
CR748342   .c 846 to 1276 1 to 429       429/431
(99 %)
2 diff
(99.6 %id)
AL833599 human endometrium carcinoma cell line .c 954 to 6152 1 to 5199   available from DKFZ, AAA   5199/5199
(100 %)
5 diff
(100.0 %id)
TI_1948123310   .c 1061 to 1659 720 to 122   fully sequenced,   599/720
(83 %)
0 diff
(100 %id)
TI_1948123486   .c 1061 to 1659 710 to 112   fully sequenced,   599/710
(84 %)
0 diff
(100 %id)
TI_1948123822   .c 1061 to 1659 720 to 122   fully sequenced,   599/720
(83 %)
0 diff
(100 %id)
DA331852 hippocampus .c 1074 to 1668 2 to 596   capped   595/596
(99 %)
1 diff
(99.9 %id)
BX507445 Liver .c 1214 to 1694 1 to 481       481/481
(100 %)
3 diff
(99.4 %id)
BQ010171 Chondrosarcoma, Left Pubic Bone .c 1400 to 2059 676 to 17   AAA   660/660
(100 %)
1 diff
(99.9 %id)
CD366204 Alveolar Macrophage, lung .c 1464 to 2057 612 to 19   AAA   594/594
(100 %)
0 diff
(100 %id)
AI160370 uterus .c 1582 to 2060 482 to 3       480/482
(99 %)
0 diff
(100 %id)
DA145479 amygdala .c 1603 to 2173 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
AA993156   .c 1698 to 2060 365 to 3       363/365
(99 %)
0 diff
(100 %id)
AL700590 human skeletal muscle .c 1771 to 2340 1 to 570       570/570
(100 %)
1 diff
(99.9 %id)
AW269609 lung, two pooled squamous cell carcinomas .c 1800 to 2058 260 to 2       259/260
(99 %)
0 diff
(100 %id)
BE177663 head_neck .c 2006 to 2697 1 to 680       680/687
(98 %)
25 diff
(96.4 %id)
BF948329 nervous_normal .c 2225 to 2444 10 to 235       226/278
(81 %)
16 diff
(94.3 %id)
AI923735 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .c 2248 to 2753 1 to 506   AAA Submitted on the opposite strand 506/506
(100 %)
0 diff
(100 %id)
AW994738 breast_normal .c 2312 to 2831 1 to 519       519/519
(100 %)
3 diff
(99.5 %id)
BF948431 nervous_normal .c 2395 to 2844 452 to 1       452/452
(100 %)
10 diff
(97.8 %id)
BX504704   .c 2476 to 3015 1 to 541       541/541
(100 %)
1 diff
(99.9 %id)
AL703028 human skeletal muscle .c 2508 to 2987 1 to 480       480/480
(100 %)
0 diff
(100 %id)
DA997426   .c 2710 to 3276 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
DB236801 trachea .c 2745 to 3317 2 to 576   capped   575/575
(100 %)
2 diff
(99.7 %id)
DA462128 tongue, tumor tissue .c 2766 to 3339 2 to 575   tiling clone, capped   574/574
(100 %)
0 diff
(100 %id)
CD244288 testis .c 2979 to 3686 1 to 717       717/773
(92 %)
16 diff
(98.0 %id)
AL706065 human skeletal muscle .c 3015 to 3606 1 to 591       591/591
(100 %)
1 diff
(99.9 %id)
TI_149281918   .c 3028 to 3735 793 to 86   AAA   708/708
(100 %)
6 diff
(99.2 %id)
BU679762 lung .c 3058 to 3735 697 to 19   AAA   679/679
(100 %)
3 diff
(99.6 %id)
CA424424 cell lines, Chondrosarcoma .c 3058 to 3727 688 to 19   AAA   670/670
(100 %)
2 diff
(99.8 %id)
AA295547 Pancreas .c 3108 to 3459 1 to 352       352/352
(100 %)
3 diff
(99.2 %id)
AA044096 uterus .c 3158 to 3438 1 to 283   fully sequenced,   283/283
(100 %)
8 diff
(97.2 %id)
BM541297 leiomyosarcoma, uterus .c 3174 to 3813 1 to 647       647/1271
(50 %)
25 diff
(98.1 %id)
AI888498 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .c 3226 to 3724 499 to 1       499/499
(100 %)
0 diff
(100 %id)
CA405597 adipose .c 3246 to 3920 1 to 672       672/672
(100 %)
3 diff
(99.6 %id)
CB265669 adipose .c 3246 to 3956 3 to 709       707/720
(98 %)
14 diff
(98.1 %id)
AI139339 uterus .c 3256 to 3727 472 to 1       472/472
(100 %)
0 diff
(100 %id)
BX117485 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .c 3281 to 3724 458 to 15   AAA   444/444
(100 %)
0 diff
(100 %id)
AW779846 Kidney .c 3306 to 3761 1 to 456     Submitted on the opposite strand 456/456
(100 %)
3 diff
(99.4 %id)
AA044286 uterus .c 3410 to 3727 318 to 1   fully sequenced,   318/318
(100 %)
0 diff
(100 %id)
DB201052 trachea .c 3493 to 4055 2 to 565   capped   564/564
(100 %)
3 diff
(99.5 %id)
D31421   .c 3548 to 3837 1 to 290       290/290
(100 %)
1 diff
(99.7 %id)
BM129814 Islets of Langerhans, Pancreas .c 3741 to 4297 1 to 557       557/557
(100 %)
0 diff
(100 %id)
BM129624 Islets of Langerhans, Pancreas .c 3741 to 4298 1 to 558       558/558
(100 %)
0 diff
(100 %id)
BX499403 Liver .c 3749 to 4159 1 to 411       411/411
(100 %)
0 diff
(100 %id)
DA024260   .c 3794 to 4367 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DA021828   .c 3795 to 4356 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
AW812855 stomach .c 4046 to 4635 18 to 602   AAA   585/655
(89 %)
9 diff
(98.7 %id)
AA359817 lung .c 4158 to 4458 1 to 303       303/306
(99 %)
3 diff
(99.1 %id)
AA358820 lung .c 4159 to 4580 1 to 420       420/422
(99 %)
12 diff
(97.2 %id)
DA573209 whole embryo, mainly body .c 4253 to 5119 2 to 866   capped   865/865
(100 %)
11 diff
(98.8 %id)
BE179614 head_neck .c 4434 to 4857 33 to 456       424/456
(92 %)
6 diff
(98.7 %id)
BE709981 head_neck .c 4434 to 4957 8 to 531       524/533
(98 %)
6 diff
(98.9 %id)
BF352625 head_neck .c 4457 to 5028 1 to 573       573/573
(100 %)
5 diff
(99.2 %id)
BF328286 breast_normal .c 4489 to 4915 453 to 27       427/453
(94 %)
0 diff
(100 %id)
AW869444 stomach_normal .c 4522 to 5028 1 to 506       506/508
(99 %)
23 diff
(95.5 %id)
BE709295 head_neck .c 4676 to 5257 584 to 3       582/584
(99 %)
0 diff
(100 %id)
BF793978 adrenal cortex carcinoma, cell line, adrenal gland .c 4735 to 5470 1 to 731       731/931
(78 %)
16 diff
(98.3 %id)
BF999410 placenta_normal .c 4749 to 5105 34 to 388       355/398
(89 %)
6 diff
(98.5 %id)
BE000707 breast_normal .c 4759 to 5209 47 to 497       451/497
(90 %)
6 diff
(98.8 %id)
DA571366 whole embryo, mainly head .c 4806 to 5526 2 to 722   capped   721/741
(97 %)
2 diff
(99.8 %id)
BF184547 bone marrow, from chronic myelogenous leukemia .c 4841 to 5549 1 to 713       713/811
(87 %)
27 diff
(96.7 %id)
CV574253 cornea, eye .c 4847 to 5482 1 to 636       636/636
(100 %)
0 diff
(100 %id)
BM979651 lung, Primary Lung Epithelial Cells .c 5013 to 5707 2 to 695   AAA Submitted on the opposite strand 694/695
(99 %)
6 diff
(99.2 %id)
CN430371 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .c 5016 to 5722 1 to 706       706/706
(100 %)
1 diff
(99.9 %id)
AI143735 heart .c 5024 to 5462 441 to 3       439/443
(99 %)
0 diff
(100 %id)
CD102490 Pooled-Skin .c 5030 to 5757 1 to 730       730/731
(99 %)
5 diff
(99.4 %id)
BE709667 head_neck .c 5036 to 5257 1 to 222       222/224
(99 %)
5 diff
(97.8 %id)
CD357633 Blood vessels - aorta, basilar and artery .c 5043 to 5724 1 to 687       687/768
(89 %)
17 diff
(97.8 %id)
BG547680 lung .c 5094 to 5732 1 to 638       638/638
(100 %)
3 diff
(99.6 %id)
AW959107   .c 5096 to 5674 36 to 617       582/618
(94 %)
34 diff
(94.5 %id)
AA385733 thyroid gland .c 5097 to 5376 1 to 280       280/280
(100 %)
1 diff
(99.7 %id)
AW880758 ovary .c 5098 to 5525 1 to 427       427/427
(100 %)
3 diff
(99.3 %id)
CA843049 Pancreas, Purified pancreatic islet .c 5146 to 5570 1 to 425       425/425
(100 %)
4 diff
(99.1 %id)
TI_149313452   .c 5221 to 6137 1000 to 96   AAA   905/965
(93 %)
30 diff
(96.9 %id)
H02065 placenta .c 5316 to 5689 1 to 387       387/389
(99 %)
17 diff
(95.7 %id)
R76769 placenta .c 5317 to 5731 1 to 418       418/419
(99 %)
8 diff
(98.1 %id)
TI_149303076   .c 5325 to 6134 887 to 84   AAA   804/939
(85 %)
7 diff
(99.3 %id)
AW238607 carcinoma in situ from retromolar trigone .c 5355 to 5771 9 to 425     Submitted on the opposite strand 417/425
(98 %)
6 diff
(98.6 %id)
AW021327 cochlea, ear .c 5379 to 5901 8 to 529       522/529
(98 %)
6 diff
(98.9 %id)
CA310523 Human Lung Epithelial cells, lung .c 5383 to 6134 767 to 16   AAA   752/752
(100 %)
3 diff
(99.7 %id)
TI_149286154   .c 5434 to 6134 782 to 82   AAA   701/702
(99 %)
22 diff
(96.9 %id)
BM981154 lung, Primary Lung Cystic Fibrosis EpithelialCells .c 5446 to 6134 707 to 19   AAA   689/689
(100 %)
1 diff
(99.9 %id)
CB305362 lung, Primary Lung Cystic Fibrosis EpithelialCells .c 5453 to 6137 700 to 16   AAA   685/685
(100 %)
2 diff
(99.8 %id)
BF677483 Prostate .c 5477 to 6148 1 to 670   AAA   670/670
(100 %)
17 diff
(97.5 %id)
TI_149283559   .c 5482 to 6152 733 to 63   AAA   671/706
(95 %)
0 diff
(100 %id)
BU680203 lung, Primary Lung Epithelial Cells .c 5482 to 6152 689 to 19   tiling clone, AAA   671/675
(99 %)
0 diff
(100 %id)
BI492198 cochlea, ear .c 5498 to 6152 672 to 18   AAA   655/655
(100 %)
0 diff
(100 %id)
BU753034 placenta .c 5537 to 6134 615 to 18   AAA   598/598
(100 %)
1 diff
(99.9 %id)
BU680973 lung .c 5540 to 6134 613 to 19   AAA   595/595
(100 %)
1 diff
(99.9 %id)
DB358219 whole embryo, mainly head .c 5542 to 6134 588 to 1       588/588
(100 %)
18 diff
(97.0 %id)
BM992772 lung, Metastatic Chondrosarcoma .c 5552 to 6145 612 to 19   AAA   594/594
(100 %)
0 diff
(100 %id)
DB360371 whole embryo, mainly body .c 5563 to 6134 568 to 1       568/568
(100 %)
18 diff
(96.9 %id)
DB314590 tongue, tumor tissue .c 5565 to 6134 571 to 1       571/571
(100 %)
2 diff
(99.7 %id)
BM129343 Islets of Langerhans, Pancreas .c 5573 to 6150 581 to 4       578/581
(99 %)
0 diff
(100 %id)
DB295641   .c 5583 to 6137 555 to 1       555/555
(100 %)
2 diff
(99.7 %id)
DB309699 hippocampus .c 5587 to 6134 549 to 1       549/549
(100 %)
1 diff
(99.9 %id)
BM129506 Islets of Langerhans, Pancreas .c 5600 to 6150 554 to 4       551/554
(99 %)
0 diff
(100 %id)
DB301426 amygdala .c 5611 to 6152 542 to 1       542/542
(100 %)
0 diff
(100 %id)
AI963083 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .c 5618 to 6152 545 to 13   AAA   533/533
(100 %)
1 diff
(99.9 %id)
AA640421 alveolar rhabdomyosarcoma .c 5633 to 6073 1 to 441       441/465
(94 %)
3 diff
(99.4 %id)
BX475018   .c 5638 to 6134 519 to 23   AAA   497/497
(100 %)
16 diff
(96.8 %id)
CA843802 Pancreas, Purified pancreatic islet .c 5649 to 6141 506 to 14   AAA   493/493
(100 %)
15 diff
(97.0 %id)
BQ023175 placenta .c 5657 to 6137 499 to 19   AAA   481/481
(100 %)
2 diff
(99.6 %id)
AI818218 adenocarcinoma, Pancreas .c 5668 to 6141 489 to 15   AAA   475/475
(100 %)
2 diff
(99.6 %id)
AI123043 pooled .c 5673 to 6134 462 to 1       462/462
(100 %)
1 diff
(99.8 %id)
AI453293 adenocarcinoma, Pancreas .c 5679 to 6134 456 to 1       456/456
(100 %)
0 diff
(100 %id)
BX090022 adenocarcinoma, Pancreas .c 5692 to 6134 457 to 15   AAA   443/443
(100 %)
0 diff
(100 %id)
BM768618 stomach .c 5709 to 6130 1 to 420       420/420
(100 %)
1 diff
(99.8 %id)
AA633946 lung .c 5711 to 6141 431 to 1       431/431
(100 %)
0 diff
(100 %id)
BU608591 Human Lung Epithelial cells, lung .c 5729 to 6152 442 to 19   AAA   424/433
(97 %)
0 diff
(100 %id)
BF060887 pooled .c 5734 to 6133 399 to 1       399/399
(100 %)
2 diff
(99.5 %id)
BQ376611 testis_normal .c 5743 to 6130 390 to 5       386/390
(98 %)
0 diff
(100 %id)
R76456 placenta .c 5764 to 6080 320 to 1       320/321
(99 %)
4 diff
(98.8 %id)
AW272300 colon, moderately-differentiated adenocarcinoma .c 5769 to 6134 381 to 16   AAA   366/366
(100 %)
1 diff
(99.8 %id)
BF889388 testis_normal .c 5808 to 5978 171 to 1     Submitted on the opposite strand 171/171
(100 %)
6 diff
(96.5 %id)
AW151665 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .c 5828 to 6134 333 to 27   AAA   307/307
(100 %)
15 diff
(95.2 %id)
H01973 placenta .c 5871 to 6126 267 to 12       256/267
(95 %)
0 diff
(100 %id)
EC482309 Prostate .c 5961 to 6080 1 to 118       118/122
(96 %)
3 diff
(97.6 %id)
BP266368 thyroid .d 1 to 583 1 to 583 exact tiling clone,   583/583
(100 %)
1 diff
(99.9 %id)
BX506020   .e 1 to 582 1 to 582 exact tiling clone,   582/582
(100 %)
1 diff
(99.9 %id)
BX493949   .f-u 1 to 451 1 to 451 Q41H E42* tiling clone,   451/451
(100 %)
3 diff
(99.4 %id)
TI_151733428   .g 1 to 827 874 to 48   tiling clone,   827/1059
(78 %)
0 diff
(100 %id)
DB475048.
matches multiple genes
hippocampus .g 664 to 1163 1 to 500 exact tiling clone, also hits gene bogee 500/500
(100 %)
1 diff
(99.8 %id)
DA832789 placenta .h-u 1 to 722 2 to 729   tiling clone, capped   728/748
(97 %)
15 diff
(98.0 %id)
H03751 placenta .h-u 186 to 617 1 to 442       442/446
(99 %)
15 diff
(96.7 %id)
DB379157 placenta .h-u 1730 to 2252 524 to 1 S3F C8X I20X L26X tiling clone,   524/526
(99 %)
12 diff
(97.8 %id)
H02855 placenta .h-u 1875 to 2272 408 to 5   tiling clone,   404/408
(99 %)
0 diff
(100 %id)
DB044130 testis .i-u 1 to 583 2 to 585 exact tiling clone, capped   584/584
(100 %)
1 diff
(99.9 %id)
DA588075 lung .j 1 to 580 2 to 581 exact tiling clone, capped   580/580
(100 %)
0 diff
(100 %id)
BP359045 mammary gland .k 1 to 574 1 to 574 exact tiling clone,   574/574
(100 %)
1 diff
(99.9 %id)
DB025667 testis .l 1 to 569 2 to 570 exact tiling clone, capped   569/569
(100 %)
0 diff
(100 %id)
DB442201.
matches multiple genes
testis .l 17 to 455 1 to 439 exact   also hits gene bogee 439/440
(99 %)
2 diff
(99.6 %id)
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f-u, .g, .h-u, .i-u, .j, .k, .l Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C