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Gene FAM173ATABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
95 supporting clones for gene FAM173A back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BU150650 epidermoid carcinoma, cell line, salivary gland .a 1 to 565 1 to 571   tiling clone,   571/932
(61 %)
28 diff
(97.0 %id)
BI597021 brain, hypothalamus .a 164 to 883 1 to 719       719/719
(100 %)
7 diff
(99.1 %id)
BI666811 brain, hypothalamus .a 164 to 969 1 to 814       814/821
(99 %)
42 diff
(94.9 %id)
TI_45213373   .a 169 to 883 131 to 844       714/844
(84 %)
7 diff
(99.2 %id)
TI_44343004   .a 169 to 969 88 to 896       809/903
(89 %)
42 diff
(95.4 %id)
DB500454 hypothalamus .a 173 to 660 1 to 488       488/488
(100 %)
1 diff
(99.8 %id)
DB474095.
matches multiple genes
hippocampus .a 179 to 689 1 to 511     also hits gene CCDC78 511/511
(100 %)
1 diff
(99.9 %id)
TI_57163296   .a 185 to 888 38 to 740   tiling clone,   703/742
(94 %)
9 diff
(98.8 %id)
BI838160 pooled pancreas and spleen .a 186 to 888 1 to 703       703/705
(99 %)
3 diff
(99.6 %id)
BF025716 melanotic melanoma, skin .a 216 to 982 1 to 753       753/800
(94 %)
18 diff
(97.8 %id)
BQ935867 carcinoma, cell line, Prostate .a 218 to 716 45 to 543       499/972
(51 %)
28 diff
(97.2 %id)
BE888115 leiomyosarcoma, uterus .a 244 to 677 1 to 519       393/519
(75 %)
10 diff
(98.1 %id)
DB576161 hypothalamus .a 494 to 989 1 to 496     Submitted on the opposite strand 496/497
(99 %)
1 diff
(99.8 %id)
DB571615 hypothalamus .a 511 to 990 1 to 480     Submitted on the opposite strand 480/480
(100 %)
1 diff
(99.8 %id)
BU632633 cell lines, Chondrosarcoma .a 517 to 980 478 to 15   AAA   464/464
(100 %)
9 diff
(98.1 %id)
BQ219738 epithelioid carcinoma, Pancreas .a 538 to 990 486 to 34   tiling clone, AAA Submitted on the opposite strand 453/905
(50 %)
0 diff
(100 %id)
BF444999 carcinoid, lung .a 587 to 956 1 to 370     Submitted on the opposite strand 370/370
(100 %)
0 diff
(100 %id)
TI_153988055   .a 587 to 989 59 to 462     Submitted on the opposite strand 404/735
(54 %)
9 diff
(98.8 %id)
AW204423   .a 589 to 969 1 to 381     Submitted on the opposite strand 381/385
(98 %)
1 diff
(99.8 %id)
TI_57152737   .b 1 to 559 52 to 609   tiling clone,   558/611
(91 %)
11 diff
(98.2 %id)
BI116421 lung, small cell carcinoma .b 18 to 855 1 to 844       844/853
(98 %)
22 diff
(97.5 %id)
BI764631 pooled colon, kidney, stomach .b 18 to 559 1 to 542       542/544
(99 %)
5 diff
(99.1 %id)
BC001181 Eye, retinoblastoma .b 19 to 875 1 to 857   tiling clone, available from MGC, AAA   857/857
(100 %)
3 diff
(99.7 %id)
NM_023933.1   .b 19 to 875 1 to 857   RefSeq, AAA   857/857
(100 %)
3 diff
(99.7 %id)
BM548353 brain, hippocampus .b 20 to 765 13 to 760       748/1188
(62 %)
21 diff
(98.3 %id)
BU541619 carcinoma, cell line, Prostate .b 23 to 649 25 to 654       630/928
(67 %)
11 diff
(98.9 %id)
BQ070768 brain, neuroblastoma, cell line .b 24 to 739 1 to 720       720/1064
(67 %)
17 diff
(98.5 %id)
BG331913 large cell carcinoma, lung .b 29 to 758 1 to 730       730/1073
(68 %)
19 diff
(98.3 %id)
DR005001 placenta .b 33 to 608 7 to 582       576/582
(98 %)
12 diff
(98.0 %id)
BE258099 eye, retinoblastoma .b 38 to 698 1 to 654       654/721
(90 %)
15 diff
(98.0 %id)
BC002624 Uterus, endometrium adenocarcinoma .b 51 to 867 1 to 817   available from MGC, AAA   817/817
(100 %)
0 diff
(100 %id)
BE302688 melanotic melanoma, skin .b 52 to 511 1 to 460   fully sequenced,   460/460
(100 %)
0 diff
(100 %id)
BF026180 melanotic melanoma, skin .b 70 to 864 1 to 786       786/828
(94 %)
28 diff
(96.7 %id)
BE389922 endometrium, adenocarcinoma cell line, uterus .b 71 to 762 1 to 686       686/720
(95 %)
19 diff
(97.4 %id)
BE391330 endometrium, adenocarcinoma cell line, uterus .b 71 to 576 1 to 527       454/528
(85 %)
12 diff
(97.8 %id)
TI_57147278   .b 120 to 865 28 to 786       759/786
(96 %)
23 diff
(97.1 %id)
BI764812 pooled colon, kidney, stomach .b 126 to 865 1 to 753       753/753
(100 %)
21 diff
(97.3 %id)
BM311001 Pancreas, Purified pancreatic islet .b 135 to 732 1 to 598       598/598
(100 %)
3 diff
(99.5 %id)
CK821575 Pancreas, Purified pancreatic islet .b 156 to 738 1 to 583     Submitted on the opposite strand 583/583
(100 %)
0 diff
(100 %id)
BU632070 cell lines, Chondrosarcoma .b 219 to 875 676 to 19   AAA   658/658
(100 %)
2 diff
(99.7 %id)
BF342574 brain, glioblastoma with EGFR amplification .b 241 to 875 1 to 636   AAA   636/636
(100 %)
2 diff
(99.7 %id)
CK821576 Pancreas, Purified pancreatic islet .b 285 to 828 544 to 1     Submitted on the opposite strand 544/544
(100 %)
0 diff
(100 %id)
BM311593 Pancreas, Purified pancreatic islet .b 313 to 873 561 to 1       561/561
(100 %)
0 diff
(100 %id)
CA495283   .b 319 to 875 1 to 558       558/935
(59 %)
4 diff
(99.6 %id)
BX458993 placenta .b 337 to 876 1 to 539   fully sequenced,   539/539
(100 %)
1 diff
(99.9 %id)
BX107057 carcinoid, lung .b 409 to 872 15 to 478       464/464
(100 %)
4 diff
(99.2 %id)
BF000052 colon, colon tumor, RER+ .b 410 to 873 465 to 2       464/465
(99 %)
0 diff
(100 %id)
BE504113 carcinoid, lung .b 420 to 875 456 to 1       456/456
(100 %)
0 diff
(100 %id)
AI703441 carcinoid, lung .b 421 to 875 455 to 1       455/455
(100 %)
4 diff
(99.2 %id)
AI689833 carcinoid, lung .b 425 to 875 451 to 1       451/451
(100 %)
2 diff
(99.6 %id)
D61018   .b 468 to 872 1 to 404       404/406
(99 %)
5 diff
(98.8 %id)
D61342   .b 468 to 875 1 to 408       408/408
(100 %)
3 diff
(99.3 %id)
D81679 brain .b 468 to 836 1 to 365       365/366
(99 %)
9 diff
(97.6 %id)
BE207519 melanotic melanoma, skin .b 481 to 867 398 to 12   fully sequenced, AAA   387/387
(100 %)
0 diff
(100 %id)
BX454559 placenta .b 558 to 872 314 to 1   fully sequenced,   314/314
(100 %)
2 diff
(99.4 %id)
EC541207 Prostate .b 567 to 658 1 to 88       88/94
(93 %)
7 diff
(92.6 %id)
EC555524 Prostate .b 568 to 665 1 to 96       96/96
(100 %)
2 diff
(98.0 %id)
AA954689 Kidney .b 568 to 875 318 to 12   AAA   307/307
(100 %)
7 diff
(97.8 %id)
AI816922 2 pooled tumors (clear cell type), Kidney .b 572 to 876 308 to 4       305/308
(99 %)
0 diff
(100 %id)
AW469900 2 pooled tumors (clear cell type), Kidney .b 572 to 874 308 to 6       303/308
(98 %)
0 diff
(100 %id)
EC545492 Prostate .b 592 to 691 1 to 99       99/99
(100 %)
4 diff
(96.0 %id)
BF511369   .b 594 to 873 298 to 18   AAA   281/296
(94 %)
3 diff
(99.0 %id)
EC544056 Prostate .b 601 to 691 14 to 101       88/101
(87 %)
6 diff
(94.1 %id)
AI492179 B-cell, chronic lymphotic leukemia .b 614 to 876 270 to 8       263/270
(97 %)
0 diff
(100 %id)
AI655597 pooled germ cell tumors .b 627 to 876 250 to 1       250/250
(100 %)
0 diff
(100 %id)
AI952735 pooled germ cell tumors .b 627 to 876 250 to 1       250/250
(100 %)
1 diff
(99.6 %id)
AW614069 pooled germ cell tumors .b 627 to 867 241 to 1       241/241
(100 %)
0 diff
(100 %id)
AI269316 Kidney .b 647 to 865 224 to 6       219/224
(97 %)
0 diff
(100 %id)
AA970459 pooled .b 682 to 876 197 to 4       194/197
(98 %)
0 diff
(100 %id)
AI383987 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 772 to 875 127 to 24   AAA   104/104
(100 %)
3 diff
(97.2 %id)
BM924050 pooled colon, kidney, stomach .c 1 to 959 1 to 968 exact tiling clone,   968/970
(99 %)
24 diff
(97.6 %id)
AI911079 pooled .c 526 to 998 476 to 4   tiling clone,   473/476
(99 %)
1 diff
(99.8 %id)
BI546061 brain, hippocampus .d 1 to 909 1 to 919 R6H P126H Q127R V128C R129G ... tiling clone,   919/923
(99 %)
46 diff
(95.1 %id)
DT220371 brain .d 5 to 684 1 to 679   tiling clone,   679/681
(99 %)
6 diff
(99.2 %id)
TI_44165997   .d 6 to 909 89 to 1002 R6H P126H Q127R V128C R129G ...     914/1006
(90 %)
47 diff
(95.4 %id)
BI836832 pooled pancreas and spleen .d 53 to 815 1 to 762   tiling clone,   762/762
(100 %)
7 diff
(99.1 %id)
TI_57164181   .d 53 to 815 64 to 825       762/825
(92 %)
11 diff
(98.7 %id)
BF981749 duodenal adenocarcinoma, cell line, small intestine .e 1 to 786 1 to 780 S166X C171W tiling clone,   780/1066
(73 %)
18 diff
(98.4 %id)
DB504901 hypothalamus .f 1 to 470 1 to 470   tiling clone,   470/470
(100 %)
4 diff
(99.2 %id)
BE797444 lung, small cell carcinoma .f 15 to 949 1 to 813 S7E S8L A9R P11Q C12P ... tiling clone,   749/1157
(64 %)
53 diff
(95.5 %id)
CR978284 T-Lymphocytes .f 94 to 370 1 to 277   tiling clone,   277/277
(100 %)
1 diff
(99.7 %id)
BM853463 Ascites, stomach .f 126 to 369 1 to 244       244/244
(100 %)
2 diff
(99.2 %id)
DB470218 hippocampus .f 370 to 822 1 to 451   tiling clone,   451/451
(100 %)
8 diff
(98.3 %id)
BE797298 lung, small cell carcinoma .g 1 to 716 1 to 717   tiling clone,   717/724
(99 %)
5 diff
(99.4 %id)
CA432424 cell lines, Chondrosarcoma .g 328 to 996 687 to 19 P149X L152P I153Y S154F Q155S ... tiling clone, AAA   669/669
(100 %)
2 diff
(99.8 %id)
BP318008 pericardium Gene FAM173A, variant not shown         This clone was ignored    
CD676240 eye, lens Gene FAM173A, variant not shown         This clone was ignored    
DA679882   Gene FAM173A, variant not shown       capped      
AK123186 cerebellum Gene FAM173A, variant not shown       available from FLJ, This clone was ignored    
BX423165 adult brain, brain Gene FAM173A, variant not shown              
BP370124 testis Gene FAM173A, variant not shown         This clone was ignored    
DB298256 cerebellum Gene FAM173A, variant not shown         This clone was ignored    
DA089503 cerebellum Gene FAM173A, variant not shown       capped This clone was ignored    
AI571780 anaplastic oligodendroglioma, brain Gene FAM173A, variant not shown         This clone was ignored    
BE619405 large cell carcinoma, lung Gene FAM173A, variant not shown         This clone was ignored    
BE619937 large cell carcinoma, lung Gene FAM173A, variant not shown         This clone was ignored    
BG742420 skin Gene FAM173A, variant not shown              
DB326367 brain Gene FAM173A, variant not shown         This clone was ignored    
DA783877 brain Gene FAM173A, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI