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Gene C16orf42TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
201 supporting clones for gene C16orf42 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BG500856 adenocarcinoma, Prostate .a 1 to 643 1 to 638   tiling clone,   638/640
(99 %)
19 diff
(97.1 %id)
BC013943 Bone marrow, chronic myelogenous leukemia .a 36 to 1241 1 to 1206   tiling clone, available from MGC, AAA   1206/1206
(100 %)
4 diff
(99.7 %id)
BC016699 Bone marrow, chronic myelogenous leukemia .a 36 to 1241 1 to 1206   available from MGC, AAA   1206/1206
(100 %)
4 diff
(99.7 %id)
BF211141 bone marrow, from chronic myelogenous leukemia .a 39 to 449 1 to 413       413/491
(84 %)
50 diff
(89.9 %id)
NM_001001410.2   .a 40 to 1241 1 to 1202   RefSeq, AAA   1202/1202
(100 %)
0 diff
(100 %id)
BF219262 brain, glioblastoma .a 41 to 642 1 to 604       604/724
(83 %)
21 diff
(97.1 %id)
DN994322 brain, whole brain .a 43 to 433 1 to 391       391/391
(100 %)
5 diff
(98.8 %id)
BG530555 embryonal carcinoma, testis .a 49 to 819 1 to 772       772/841
(91 %)
24 diff
(97.2 %id)
BC017325 Lung, large cell carcinoma .a 56 to 1241 1 to 1186   available from MGC, AAA   1186/1186
(100 %)
1 diff
(100.0 %id)
BG332160 large cell carcinoma, lung .a 56 to 812 1 to 746       746/882
(84 %)
72 diff
(91.9 %id)
BE792494 lung, small cell carcinoma .a 61 to 875 1 to 811       809/1196
(67 %)
20 diff
(98.4 %id)
CF126839 Chondrosarcoma Lung Metastasis cell lines, lung .a 61 to 178 1 to 117       117/117
(100 %)
5 diff
(95.8 %id)
BF207312 brain, neuroblastoma .a 62 to 606 1 to 566       566/865
(65 %)
38 diff
(95.7 %id)
BG339128 leiomyosarcoma cell line, uterus .a 64 to 805 1 to 745       745/939
(79 %)
20 diff
(97.9 %id)
BG709543 brain, hypothalamus .a 76 to 810 1 to 729       729/758
(96 %)
21 diff
(97.3 %id)
BI597366 brain, hypothalamus .a 76 to 684 1 to 609       609/609
(100 %)
9 diff
(98.6 %id)
BC011785 Ovary, adenocarcinoma .a 78 to 1241 1 to 1163   tiling clone, available from MGC, AAA   1163/1163
(100 %)
2 diff
(99.9 %id)
TI_45216140   .a 79 to 684 125 to 730       606/730
(83 %)
10 diff
(98.7 %id)
BE258153 eye, retinoblastoma .a 81 to 730 1 to 636       636/716
(88 %)
30 diff
(95.9 %id)
BE747038 adenocarcinoma cell line, ovary .a 99 to 810 1 to 698   available from MGC,   698/818
(85 %)
28 diff
(96.6 %id)
BE741626 adenocarcinoma cell line, ovary .a 134 to 858 1 to 717       717/721
(99 %)
12 diff
(98.4 %id)
CD674441 eye, lens .a 143 to 606 1 to 464       464/464
(100 %)
22 diff
(95.3 %id)
BI160048 epithelioid carcinoma cell line, Pancreas .a 147 to 875 1 to 733       732/742
(98 %)
13 diff
(98.3 %id)
AA215710 germinal center B cell .a 148 to 712 1 to 586     Submitted on the opposite strand 586/588
(99 %)
39 diff
(93.4 %id)
AI084171 anaplastic oligodendroglioma, brain .a 148 to 623 1 to 474     Submitted on the opposite strand 474/474
(100 %)
5 diff
(99.0 %id)
AI375098   .a 148 to 685 1 to 538     Submitted on the opposite strand 538/539
(99 %)
1 diff
(99.9 %id)
AI423636 brain, glioblastoma (pooled) .a 148 to 593 1 to 446     Submitted on the opposite strand 446/446
(100 %)
0 diff
(100 %id)
AI524203 B-cell, chronic lymphotic leukemia .a 148 to 731 1 to 584     Submitted on the opposite strand 584/584
(100 %)
6 diff
(99.0 %id)
AI560264 anaplastic oligodendroglioma, brain .a 148 to 609 1 to 463     Submitted on the opposite strand 463/464
(99 %)
6 diff
(98.8 %id)
AI571317 anaplastic oligodendroglioma, brain .a 148 to 713 1 to 566     Submitted on the opposite strand 566/566
(100 %)
9 diff
(98.5 %id)
AI659324 Prostate .a 148 to 635 1 to 488     Submitted on the opposite strand 488/488
(100 %)
0 diff
(100 %id)
AI672681 thymus, pooled .a 148 to 610 1 to 464     Submitted on the opposite strand 464/464
(100 %)
4 diff
(99.2 %id)
AI660316 thymus, pooled .a 148 to 751 1 to 604     Submitted on the opposite strand 604/604
(100 %)
6 diff
(99.1 %id)
AI813672 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .a 148 to 711 1 to 565     Submitted on the opposite strand 565/565
(100 %)
2 diff
(99.7 %id)
AI927360 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .a 148 to 615 1 to 468     Submitted on the opposite strand 468/470
(99 %)
17 diff
(96.4 %id)
AI923651 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .a 148 to 662 1 to 515     Submitted on the opposite strand 515/515
(100 %)
0 diff
(100 %id)
AW007556 colon .a 148 to 791 1 to 644     Submitted on the opposite strand 644/644
(100 %)
1 diff
(99.9 %id)
AI971937 fibrotheoma, ovary .a 148 to 610 1 to 464     Submitted on the opposite strand 464/464
(100 %)
1 diff
(99.8 %id)
AI972013 fibrotheoma, ovary .a 148 to 599 1 to 452     Submitted on the opposite strand 452/452
(100 %)
3 diff
(99.4 %id)
AW057975 thymus, pooled .a 148 to 593 1 to 451     Submitted on the opposite strand 451/451
(100 %)
5 diff
(98.9 %id)
AW341301 carcinoid, lung .a 148 to 767 1 to 620     Submitted on the opposite strand 620/620
(100 %)
1 diff
(99.9 %id)
BE674893 B-cell, chronic lymphotic leukemia .a 148 to 810 1 to 662     Submitted on the opposite strand 662/662
(100 %)
3 diff
(99.6 %id)
BF196333 fibrotheoma, ovary .a 148 to 850 1 to 700     Submitted on the opposite strand 700/701
(99 %)
17 diff
(97.6 %id)
TI_154090397   .a 148 to 706 59 to 620     Submitted on the opposite strand 562/1224
(45 %)
25 diff
(98.0 %id)
TI_157600266   .a 148 to 994 54 to 884     Submitted on the opposite strand 833/886
(94 %)
25 diff
(97.2 %id)
AW014117   .a 149 to 408 1 to 260     Submitted on the opposite strand 260/260
(100 %)
3 diff
(98.9 %id)
BF058171 fibrotheoma, ovary .a 152 to 352 1 to 202     Submitted on the opposite strand 202/202
(100 %)
7 diff
(96.6 %id)
CD674421 eye, lens .a 154 to 773 1 to 620       620/620
(100 %)
0 diff
(100 %id)
BQ636546 eye, retina .a 157 to 721 9 to 573       565/573
(98 %)
8 diff
(98.7 %id)
AI091298 pooled .a 166 to 800 1 to 635     Submitted on the opposite strand 635/635
(100 %)
1 diff
(99.9 %id)
AI094880 brain, glioblastoma (pooled) .a 166 to 635 1 to 470     Submitted on the opposite strand 470/470
(100 %)
0 diff
(100 %id)
AI276183 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 166 to 598 1 to 434     Submitted on the opposite strand 434/434
(100 %)
2 diff
(99.6 %id)
AI435931 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 166 to 810 1 to 644     Submitted on the opposite strand 644/644
(100 %)
10 diff
(98.5 %id)
AI685352 pooled .a 166 to 633 1 to 466     Submitted on the opposite strand 466/466
(100 %)
2 diff
(99.6 %id)
AW007602 colon .a 166 to 791 1 to 627     Submitted on the opposite strand 627/627
(100 %)
5 diff
(99.3 %id)
AI971966 fibrotheoma, ovary .a 166 to 610 1 to 446     Submitted on the opposite strand 446/446
(100 %)
1 diff
(99.8 %id)
BE328802 carcinoid, lung .a 166 to 722 1 to 557     Submitted on the opposite strand 557/557
(100 %)
13 diff
(97.7 %id)
AI418486 brain, glioblastoma (pooled) .a 173 to 731 1 to 558     Submitted on the opposite strand 558/558
(100 %)
8 diff
(98.6 %id)
BM846293 myeloma .a 173 to 715 1 to 541       541/541
(100 %)
9 diff
(98.4 %id)
AW088075 brain, tumor, 5 pooled (see description) .a 178 to 429 1 to 253     Submitted on the opposite strand 253/254
(99 %)
6 diff
(97.7 %id)
AI925218 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .a 184 to 773 1 to 590     Submitted on the opposite strand 590/590
(100 %)
4 diff
(99.4 %id)
AI684711 pooled .a 186 to 800 1 to 615     Submitted on the opposite strand 615/615
(100 %)
7 diff
(98.9 %id)
AI675241 Prostate .a 192 to 713 1 to 522     Submitted on the opposite strand 522/531
(98 %)
7 diff
(98.7 %id)
AI951731 fibrotheoma, ovary .a 192 to 767 1 to 576     Submitted on the opposite strand 576/576
(100 %)
3 diff
(99.5 %id)
AI864904 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .a 196 to 631 1 to 437     Submitted on the opposite strand 437/437
(100 %)
1 diff
(99.8 %id)
AI246175 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 197 to 662 1 to 466     Submitted on the opposite strand 466/466
(100 %)
11 diff
(97.7 %id)
AI224948 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 197 to 673 1 to 477     Submitted on the opposite strand 477/478
(99 %)
1 diff
(99.8 %id)
AI264589 adenocarcinoma, colon .a 197 to 611 1 to 415     Submitted on the opposite strand 415/415
(100 %)
5 diff
(98.8 %id)
AI864881 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .a 197 to 628 1 to 434     Submitted on the opposite strand 434/437
(99 %)
7 diff
(98.4 %id)
AI264852 borderline ovarian carcinoma, ovary .a 210 to 449 1 to 240     Submitted on the opposite strand 240/240
(100 %)
0 diff
(100 %id)
AA258475 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 221 to 546 1 to 326     Submitted on the opposite strand 326/326
(100 %)
9 diff
(97.3 %id)
AA764863 germinal center B cell .a 225 to 522 1 to 294     Submitted on the opposite strand 294/294
(100 %)
9 diff
(97.0 %id)
BF974746 B-cells, primary B-cells from tonsils (cell line) .a 229 to 1074 1 to 846       846/1131
(74 %)
39 diff
(96.6 %id)
AA835659 germinal center B cell .a 241 to 596 1 to 355       355/355
(100 %)
3 diff
(99.2 %id)
AA410348 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 265 to 665 396 to 1     Submitted on the opposite strand 396/396
(100 %)
11 diff
(97.3 %id)
AA406408 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 278 to 407 1 to 130     Submitted on the opposite strand 130/130
(100 %)
5 diff
(96.2 %id)
AA551682 colon .a 278 to 509 1 to 232     Submitted on the opposite strand 232/232
(100 %)
23 diff
(90.1 %id)
AI797628 pooled .a 278 to 619 1 to 342     Submitted on the opposite strand 342/358
(95 %)
21 diff
(94.2 %id)
AI870170 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .a 278 to 607 1 to 330     Submitted on the opposite strand 330/331
(99 %)
30 diff
(91.0 %id)
CN308507 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 283 to 693 1 to 411       411/411
(100 %)
0 diff
(100 %id)
AA813462   .a 287 to 583 1 to 297     Submitted on the opposite strand 297/298
(99 %)
34 diff
(88.6 %id)
AA543059 colon .a 287 to 634 1 to 348     Submitted on the opposite strand 348/349
(99 %)
29 diff
(91.7 %id)
BQ421397 epithelioid carcinoma, Pancreas .a 305 to 1121 1 to 830       830/880
(94 %)
24 diff
(97.3 %id)
AI304322 adenocarcinoma, colon .a 334 to 592 1 to 260     Submitted on the opposite strand 260/260
(100 %)
8 diff
(97.0 %id)
AI341540   .a 349 to 824 1 to 476     Submitted on the opposite strand 476/476
(100 %)
0 diff
(100 %id)
CD172433 White Matter .a 389 to 1233 1 to 851       851/855
(99 %)
11 diff
(98.8 %id)
CN308509 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 390 to 1024 1 to 635       635/635
(100 %)
2 diff
(99.7 %id)
AA317548 retina .a 395 to 808 1 to 420       420/420
(100 %)
6 diff
(98.6 %id)
AW967078   .a 396 to 1073 1 to 680       680/684
(99 %)
10 diff
(98.6 %id)
CN308508 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 404 to 927 1 to 524       524/524
(100 %)
4 diff
(99.3 %id)
BU501444 eye, normal pigmented retinal epithelium .a 440 to 1188 1 to 756       756/964
(78 %)
48 diff
(95.1 %id)
BM712037 eye, lens .a 445 to 858 1 to 414   fully sequenced,   414/414
(100 %)
0 diff
(100 %id)
TI_154045030   .a 460 to 1241 856 to 84   AAA   773/974
(79 %)
8 diff
(99.2 %id)
TI_149298264   .a 477 to 1241 867 to 113   AAA   755/901
(83 %)
10 diff
(98.9 %id)
BM728236 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 496 to 924 1 to 428   fully sequenced,   428/428
(100 %)
3 diff
(99.3 %id)
CR735860 melanocyte .a 501 to 1165 1 to 665       665/665
(100 %)
1 diff
(99.9 %id)
H98014 melanocyte .a 502 to 887 1 to 383       383/404
(94 %)
17 diff
(95.8 %id)
EL735977 mixed .a 516 to 1045 1 to 530       530/674
(78 %)
1 diff
(99.9 %id)
TI_1948236622   .a 516 to 1045 1133 to 602     Submitted on the opposite strand 532/1448
(36 %)
25 diff
(98.3 %id)
CK821141 Islets of Langerhans, Pancreas .a 531 to 1126 1 to 596       596/596
(100 %)
0 diff
(100 %id)
BF688877 eye, normal pigmented retinal epithelium .a 532 to 1198 707 to 35       673/708
(95 %)
3 diff
(99.6 %id)
BF813854 colon_ins .a 536 to 1045 32 to 536       505/536
(94 %)
8 diff
(98.6 %id)
BQ332893 lung_tumor .a 546 to 885 354 to 12       343/354
(96 %)
6 diff
(98.4 %id)
BI793329 Islets of Langerhans, Pancreas .a 547 to 1121 1 to 575       575/575
(100 %)
0 diff
(100 %id)
BI962632 Islets of Langerhans, Pancreas .a 547 to 905 1 to 359   fully sequenced,   359/359
(100 %)
0 diff
(100 %id)
AI799802 Prostate .a 555 to 1243 688 to 2       687/688
(99 %)
8 diff
(98.9 %id)
TI_149291670   .a 559 to 1241 781 to 99   AAA   683/683
(100 %)
3 diff
(99.6 %id)
CB215914 normal endometrium, late proliferativephase, cycle day 13, uterus .a 578 to 1162 1 to 585       585/585
(100 %)
0 diff
(100 %id)
AI741018 pooled .a 583 to 1243 666 to 4       663/666
(99 %)
5 diff
(99.3 %id)
AI693236 carcinoid, lung .a 590 to 1240 651 to 1       651/653
(99 %)
9 diff
(98.7 %id)
AA215709 germinal center B cell .a 604 to 963 351 to 1     Submitted on the opposite strand 351/351
(100 %)
13 diff
(96.3 %id)
BU070467 insulinoma, Pancreas .a 619 to 1238 641 to 17   AAA   625/631
(99 %)
24 diff
(96.2 %id)
BU621274 cell lines, Chondrosarcoma .a 620 to 1241 640 to 19   AAA   622/622
(100 %)
1 diff
(99.9 %id)
CA411917 Chondrosarcoma Grade II, Left Pelvis .a 624 to 1241 636 to 19   AAA   618/618
(100 %)
0 diff
(100 %id)
BM983033 lung, Primary Lung Cystic Fibrosis EpithelialCells .a 625 to 1241 632 to 16   AAA   617/617
(100 %)
0 diff
(100 %id)
BU634510 cell lines, Chondrosarcoma .a 625 to 1241 632 to 16   AAA   617/617
(100 %)
1 diff
(99.9 %id)
BQ014847 Chondrosarcoma, Left Pubic Bone .a 627 to 1241 631 to 16   AAA   616/634
(97 %)
3 diff
(99.6 %id)
BF883514 lung_tumor .a 632 to 972 344 to 2     Submitted on the opposite strand 343/348
(98 %)
3 diff
(99.2 %id)
AW340952 carcinoid, lung .a 632 to 1240 609 to 1       609/611
(99 %)
2 diff
(99.7 %id)
AW340975 carcinoid, lung .a 632 to 1243 613 to 2       612/618
(99 %)
12 diff
(98.1 %id)
TI_1948236623   .a 632 to 1045 1023 to 608     Submitted on the opposite strand 416/1236
(33 %)
9 diff
(99.3 %id)
TI_1948236968   .a 632 to 1045 1015 to 606     Submitted on the opposite strand 410/1260
(32 %)
22 diff
(98.3 %id)
BU682109 lung .a 632 to 1241 628 to 19   AAA   610/617
(98 %)
1 diff
(99.9 %id)
TI_149312613   .a 633 to 1241 693 to 85   AAA   609/983
(61 %)
0 diff
(100 %id)
BM978170 lung .a 633 to 1241 624 to 16   AAA   609/616
(98 %)
0 diff
(100 %id)
CK821140 Islets of Langerhans, Pancreas .a 663 to 1243 587 to 7       581/587
(98 %)
0 diff
(100 %id)
BI793021 Islets of Langerhans, Pancreas .a 666 to 1243 584 to 7       578/584
(98 %)
0 diff
(100 %id)
BF813257 colon_ins .a 687 to 970 66 to 350       285/350
(81 %)
9 diff
(97.5 %id)
BE075556 breast .a 695 to 1026 24 to 360       337/360
(93 %)
11 diff
(97.0 %id)
TI_154144253   .a 717 to 1239 609 to 83     Submitted on the opposite strand 527/531
(99 %)
12 diff
(97.8 %id)
CN308510 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 722 to 1243 527 to 6     Submitted on the opposite strand 522/527
(99 %)
0 diff
(100 %id)
TI_1948236796   .a 722 to 1045 931 to 603     Submitted on the opposite strand 329/1291
(25 %)
22 diff
(98.3 %id)
BQ322460 colon_est .a 724 to 1228 517 to 11       507/523
(96 %)
4 diff
(99.3 %id)
CN308506 embryonic stem cells, DMSO-treated H9 cellline .a 730 to 1241 523 to 12   AAA Submitted on the opposite strand 512/512
(100 %)
4 diff
(99.3 %id)
TI_1948237154   .a 738 to 1045 903 to 599     Submitted on the opposite strand 305/1412
(21 %)
15 diff
(99.0 %id)
AA716721 heart .a 747 to 1242 493 to 1       493/495
(99 %)
11 diff
(97.8 %id)
BM688608 eye, eye anterior segment .a 752 to 1178 9 to 435       427/435
(98 %)
3 diff
(99.4 %id)
BF131571 hypernephroma, Kidney .a 764 to 1238 1 to 475       475/649
(73 %)
11 diff
(98.4 %id)
BF222112 Prostate .a 786 to 1036 256 to 6       251/256
(98 %)
3 diff
(98.9 %id)
AI146703 uterus .a 791 to 1241 450 to 1       450/450
(100 %)
1 diff
(99.8 %id)
BF820304 kidney_tumor .a 797 to 1104 322 to 12     Submitted on the opposite strand 311/322
(96 %)
0 diff
(100 %id)
BI064176 uterus_tumor .a 797 to 1099 1 to 303       303/303
(100 %)
2 diff
(99.4 %id)
BI064262 uterus_tumor .a 797 to 1099 1 to 303       303/303
(100 %)
0 diff
(100 %id)
BI064266 uterus_tumor .a 797 to 1099 1 to 303       303/303
(100 %)
0 diff
(100 %id)
BI064315 uterus_tumor .a 797 to 1099 303 to 1       303/303
(100 %)
0 diff
(100 %id)
BI064163 uterus_tumor .a 800 to 1099 299 to 1       299/299
(100 %)
12 diff
(96.0 %id)
TI_151738223   .a 804 to 1243 574 to 135       440/977
(45 %)
4 diff
(99.6 %id)
BI064304 uterus_tumor .a 810 to 1105 14 to 309       296/321
(92 %)
14 diff
(95.7 %id)
C00805   .a 810 to 1126 1 to 317       317/317
(100 %)
3 diff
(99.1 %id)
TI_154142504   .a 811 to 1238 524 to 97   AAA Submitted on the opposite strand 428/748
(57 %)
5 diff
(99.4 %id)
AW879681 ovary .a 813 to 1192 379 to 1       379/379
(100 %)
4 diff
(99.0 %id)
CD519611 White Matter .a 815 to 1241 8 to 434   AAA   427/434
(98 %)
6 diff
(98.7 %id)
AW083808 colon, moderately differentiated adenocarcinoma .a 816 to 1243 430 to 3       428/430
(99 %)
1 diff
(99.8 %id)
CD557049 brain, Pituitary .a 816 to 1241 1 to 426   AAA   426/426
(100 %)
3 diff
(99.3 %id)
BG338976 leiomyosarcoma cell line, uterus .a 823 to 1241 1 to 419       419/655
(63 %)
3 diff
(99.6 %id)
BG339919 leiomyosarcoma cell line, uterus .a 823 to 1241 1 to 418   AAA   418/418
(100 %)
5 diff
(98.9 %id)
BM670317 eye, lens .a 828 to 1241 429 to 16   fully sequenced, AAA   414/414
(100 %)
0 diff
(100 %id)
BF439696 brain, glioblastoma (pooled) .a 831 to 1041 211 to 1       211/211
(100 %)
4 diff
(98.2 %id)
AI086907 senescent fibroblast .a 834 to 1241 420 to 13   AAA   408/408
(100 %)
0 diff
(100 %id)
EC536877 Prostate .a 844 to 939 1 to 94       96/98
(97 %)
6 diff
(93.9 %id)
BI789155 Islets of Langerhans, Pancreas .a 844 to 1243 406 to 7   fully sequenced,   400/406
(98 %)
0 diff
(100 %id)
CD674231 eye, lens .a 848 to 1241 451 to 58   AAA Submitted on the opposite strand 394/394
(100 %)
3 diff
(99.3 %id)
AI638343 pooled germ cell tumors .a 850 to 1241 392 to 1       392/392
(100 %)
0 diff
(100 %id)
AW406663 lymph .a 852 to 1239 395 to 8     Submitted on the opposite strand 388/395
(98 %)
0 diff
(100 %id)
AA481839 ovarian tumor, ovary .a 857 to 1241 437 to 54   AAA Submitted on the opposite strand 384/385
(99 %)
7 diff
(98.2 %id)
AA258690 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 860 to 1239 379 to 1     Submitted on the opposite strand 379/379
(100 %)
7 diff
(98.2 %id)
AA482458 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 861 to 1234 371 to 1     Submitted on the opposite strand 371/371
(100 %)
4 diff
(99.0 %id)
AW733086 Kidney, renal cell adenocarcinoma .a 865 to 1243 386 to 8       379/386
(98 %)
0 diff
(100 %id)
W01878 heart .a 870 to 1241 372 to 1       372/420
(88 %)
12 diff
(97.2 %id)
AI970378 pooled germ cell tumors .a 871 to 1243 374 to 2       373/375
(99 %)
0 diff
(100 %id)
BF439903 brain, glioblastoma (pooled) .a 871 to 1041 171 to 1       171/175
(97 %)
8 diff
(95.5 %id)
AI217078 heart .a 878 to 1242 365 to 1       365/365
(100 %)
0 diff
(100 %id)
BI013967 lung_tumor .a 884 to 1196 25 to 335       311/335
(92 %)
6 diff
(98.3 %id)
BM679893 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 894 to 1242 368 to 19   fully sequenced, AAA   350/350
(100 %)
4 diff
(98.9 %id)
AI613004 carcinoid, lung .a 911 to 1243 334 to 3       332/334
(99 %)
0 diff
(100 %id)
AI804998 Prostate .a 944 to 1241 320 to 23   AAA   298/298
(100 %)
6 diff
(98.0 %id)
F31747 pectoral muscle (after mastectomy) .a 953 to 1035 1 to 83       83/83
(100 %)
1 diff
(98.8 %id)
AI240952 Kidney .a 974 to 1241 287 to 20   AAA   268/268
(100 %)
2 diff
(99.3 %id)
BE048932 Kidney .a 974 to 1241 283 to 16   AAA   268/268
(100 %)
0 diff
(100 %id)
AI301780 carcinoid, lung .a 988 to 1240 253 to 1       253/253
(100 %)
1 diff
(99.7 %id)
AA302073 aorta .a 1001 to 1238 1 to 239       239/239
(100 %)
1 diff
(99.6 %id)
CB409217 maxilla, pooled .a 1041 to 1245 1 to 207       207/207
(100 %)
7 diff
(96.7 %id)
BG271361 normal head/neck tissue .a 1096 to 1243 150 to 3       148/173
(85 %)
0 diff
(100 %id)
AI982580 pooled germ cell tumors .a 1114 to 1241 146 to 19   AAA   128/128
(100 %)
6 diff
(95.4 %id)
AA721110 germinal center B cell .a 1118 to 1241 150 to 29       122/150
(81 %)
0 diff
(100 %id)
TI_159679422   .b 1 to 902 990 to 99 L4* tiling clone, AAA   892/1028
(86 %)
25 diff
(97.6 %id)
BM459604 leiomyosarcoma, uterus .b 63 to 718 35 to 692   tiling clone,   658/977
(67 %)
20 diff
(98.0 %id)
TI_159687966   .b 318 to 902 689 to 104   AAA   586/1005
(58 %)
11 diff
(99.0 %id)
TI_154145327   .b 357 to 877 640 to 120     Submitted on the opposite strand 521/788
(66 %)
7 diff
(99.2 %id)
TI_154146479   .b 357 to 870 605 to 89     Submitted on the opposite strand 517/600
(86 %)
13 diff
(97.9 %id)
AA262869 germinal center B cell .b 373 to 594 1 to 221       221/221
(100 %)
5 diff
(97.8 %id)
DA298781 hippocampus .b 705 to 1267 22 to 584   tiling clone, capped   563/583
(96 %)
9 diff
(98.5 %id)
CN308511 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 705 to 918 10 to 224       215/224
(95 %)
6 diff
(97.4 %id)
BP389878 pancreatic islet .b 705 to 1063 359 to 1       359/364
(98 %)
0 diff
(100 %id)
DB544125.
matches multiple genes
hippocampus .b 708 to 1167 460 to 1     also hits gene BAIAP3 460/462
(99 %)
1 diff
(99.8 %id)
DB550952.
matches multiple genes
hippocampus .b 708 to 1227 520 to 1     also hits gene BAIAP3 520/522
(99 %)
0 diff
(100 %id)
DB551322.
matches multiple genes
hippocampus .b 709 to 1186 479 to 1     also hits gene BAIAP3 479/482
(99 %)
10 diff
(98.0 %id)
BF091959 testis_normal .b 735 to 1128 1 to 393       393/393
(100 %)
4 diff
(99.0 %id)
TI_159691170   .c 1 to 779 916 to 152 R2E L3S L4A G5P R6I ... tiling clone, AAA   765/1112
(68 %)
23 diff
(98.0 %id)
BM903585 ovary (pool of 3) .d-u 1 to 561 13 to 573 exact tiling clone, AAA   561/612
(91 %)
1 diff
(99.9 %id)
BG003692 placenta_normal .e-u 1 to 237 34 to 263 M2I R3E G4E S5H H6L ... tiling clone,   230/266
(86 %)
12 diff
(95.5 %id)
BG011702 placenta_normal .e-u 22 to 211 11 to 194   tiling clone,   184/196
(93 %)
13 diff
(93.4 %id)
AI143673 anaplastic oligodendroglioma, brain Gene C16orf42, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
EB385952 eye, optic nerve Gene C16orf42, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d-u, .e-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C