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Gene C4orf42TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
96 supporting clones for gene C4orf42 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AA454229   .a 1 to 226 1 to 224   tiling clone, fully sequenced,   224/224
(100 %)
6 diff
(97.4 %id)
AA454230   .a 196 to 733 540 to 3   tiling clone, fully sequenced,   538/540
(99 %)
0 diff
(100 %id)
DB462288 testis .b 1 to 458 1 to 464   tiling clone,   464/464
(100 %)
3 diff
(99.4 %id)
DB496229 hypothalamus .b 100 to 567 1 to 474       474/474
(100 %)
3 diff
(99.4 %id)
DA202449 brain .b 270 to 839 2 to 577 P12A L13A S15L R16P A18R ... tiling clone, capped   576/576
(100 %)
4 diff
(99.4 %id)
DA337746 hippocampus .c-u 1 to 552 5 to 574 P12A L13A P14A S15A R16A ... tiling clone, capped   573/573
(100 %)
9 diff
(98.5 %id)
DB094544 testis .c-u 2 to 560 2 to 560 exact tiling clone, capped   559/560
(99 %)
1 diff
(99.9 %id)
BQ049648 lymph, lymphoma, cell line .c-u 3 to 625 1 to 639 P12A L13A S15L R16P A18R ...     639/1234
(51 %)
50 diff
(96.0 %id)
DA715885   .c-u 4 to 328 2 to 346   capped   345/345
(100 %)
10 diff
(97.2 %id)
DB141350 thymus .c-u 136 to 617 2 to 484   capped   483/484
(99 %)
8 diff
(98.4 %id)
DA933896 Spleen .c-u 283 to 873 2 to 592   capped   591/591
(100 %)
3 diff
(99.5 %id)
TI_154195773   .c-u 340 to 1110 11 to 781   tiling clone,   771/1031
(74 %)
6 diff
(99.5 %id)
BU508539 leiomyosarcoma, uterus .c-u 498 to 1076 1 to 587   tiling clone,   587/1045
(56 %)
6 diff
(99.5 %id)
DA598079   .d 1 to 532 25 to 556 exact tiling clone, capped   533/555
(96 %)
7 diff
(98.8 %id)
AK091442 brain .e 1 to 2422 2 to 2423 R21P tiling clone, available from FLJ,   2423/2423
(100 %)
3 diff
(99.9 %id)
DA496999 brain .e 1 to 589 2 to 590   capped   589/589
(100 %)
0 diff
(100 %id)
DA285304 corpus callosum .e 45 to 588 2 to 547   capped   546/546
(100 %)
2 diff
(99.7 %id)
DA707136   .e 346 to 934 2 to 590   capped   589/589
(100 %)
0 diff
(100 %id)
TI_149274294   .e 1696 to 2422 811 to 84   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 728/989
(73 %)
13 diff
(98.7 %id)
BM968463 lung, Primary Lung Epithelial Cells .e 1704 to 2422 738 to 19   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 720/722
(99 %)
8 diff
(98.9 %id)
BU180912 large cell carcinoma, lung .e 1803 to 2617 1 to 825   tiling clone,   825/857
(96 %)
29 diff
(96.7 %id)
DB315679 brain .e 1877 to 2422 546 to 1       546/548
(99 %)
1 diff
(99.9 %id)
BX118182 ovarian tumor, ovary .e 2011 to 2297 1 to 288       288/288
(100 %)
4 diff
(98.7 %id)
AI734134 ovarian tumor, ovary .e 2011 to 2418 1 to 408       408/408
(100 %)
0 diff
(100 %id)
AA454775 ovarian tumor, ovary .e 2011 to 2411 11 to 408       398/408
(97 %)
6 diff
(98.6 %id)
AI734159 ovarian tumor, ovary .e 2011 to 2418 1 to 408       408/408
(100 %)
0 diff
(100 %id)
AA430636 ovarian tumor, ovary .e 2012 to 2418 1 to 407       407/407
(100 %)
6 diff
(98.6 %id)
AI732739 ovarian tumor, ovary .e 2044 to 2421 378 to 1   tiling clone,   378/378
(100 %)
0 diff
(100 %id)
AA454724 ovarian tumor, ovary .e 2044 to 2405 361 to 1       361/361
(100 %)
3 diff
(99.2 %id)
AI732768 ovarian tumor, ovary .e 2044 to 2421 378 to 1       378/378
(100 %)
1 diff
(99.8 %id)
AI740828 pooled .e 2044 to 2421 378 to 1       378/378
(100 %)
0 diff
(100 %id)
AA430407 ovarian tumor, ovary .e 2045 to 2421 376 to 1       376/376
(100 %)
3 diff
(99.3 %id)
EB388657 eye, optic nerve .e 2569 to 3356 1 to 788   tiling clone,   788/788
(100 %)
1 diff
(99.9 %id)
BG988271 head_neck .e 2704 to 2903 11 to 210       200/210
(95 %)
6 diff
(97.2 %id)
AW771442 colon, juvenile granulosa tumor .e 3158 to 3670 513 to 1   tiling clone,   513/513
(100 %)
0 diff
(100 %id)
NR_033339.1   .f 1 to 2929 1 to 2929 exact RefSeq, tiling clone, AAA   2929/2929
(100 %)
0 diff
(100 %id)
DA805341 brain .f 54 to 589 2 to 538   capped   537/537
(100 %)
4 diff
(99.3 %id)
DA241198 brain .f 100 to 680 2 to 582   capped   581/581
(100 %)
1 diff
(99.9 %id)
DN997528 breast cancer, Mammary gland (cancer tissue) .f 180 to 766 1 to 587       587/587
(100 %)
5 diff
(99.2 %id)
TI_57231399   .f 369 to 1177 84 to 910 W2V L3V E5W C6M T7C ...     827/841
(98 %)
29 diff
(96.6 %id)
BI869379 adenocarcinoma, cell line, Liver .f 371 to 1177 1 to 825 W2V L3V E5W C6M T7C ...     825/839
(98 %)
29 diff
(96.6 %id)
AL711559 human skeletal muscle .f 397 to 969 9 to 581       573/581
(98 %)
1 diff
(99.9 %id)
DR006287 Prostate .f 402 to 943 1 to 542       542/542
(100 %)
1 diff
(99.9 %id)
BC120947 PCR rescued clones .f 449 to 1359 1 to 911 S19G     911/912
(99 %)
2 diff
(99.8 %id)
BC120948 PCR rescued clones .f 449 to 1359 1 to 911 S19G     911/912
(99 %)
2 diff
(99.8 %id)
BQ220999 melanotic melanoma, skin .f 532 to 1250 1 to 720       720/887
(81 %)
13 diff
(98.6 %id)
BU165081 eye, retinoblastoma .f 565 to 1428 12 to 882       871/882
(98 %)
7 diff
(99.3 %id)
BI022844 marrow .f 655 to 1058 407 to 4       404/407
(99 %)
0 diff
(100 %id)
BM541720 leiomyosarcoma, uterus .f 677 to 1620 37 to 986       950/1113
(85 %)
27 diff
(97.6 %id)
F05483 brain, total brain .f 680 to 949 1 to 270       270/270
(100 %)
2 diff
(99.3 %id)
Z41940 brain, total brain .f 680 to 959 1 to 279       279/279
(100 %)
1 diff
(99.7 %id)
CF995686 mixed .f 763 to 1398 84 to 709       626/774
(80 %)
6 diff
(99.3 %id)
BQ641235 eye, normal pigmented retinal epithelium .f 790 to 1609 1 to 831       831/920
(90 %)
17 diff
(98.2 %id)
BC013775 Skin, melanotic melanoma. .f 898 to 2492 1 to 1595   available from MGC, AAA   1595/1595
(100 %)
5 diff
(99.7 %id)
BE898129 melanotic melanoma, skin .f 918 to 1736 1 to 821   available from MGC,   821/839
(97 %)
27 diff
(96.8 %id)
AL390154 melanoma (MeWo cell line) .f 950 to 2492 1 to 1543   available from DKFZ, AAA   1543/1543
(100 %)
1 diff
(100.0 %id)
BE869715 adenocarcinoma, colon .f 951 to 1687 1 to 738       738/941
(78 %)
49 diff
(94.8 %id)
BG025831 lymph, lymphoma, cell line .f 1056 to 1458 1 to 410       410/559
(73 %)
8 diff
(98.6 %id)
AA372193 muscle .f 1066 to 1366 1 to 301       301/301
(100 %)
5 diff
(98.4 %id)
CN429494 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .f 1243 to 1956 1 to 714       714/714
(100 %)
2 diff
(99.8 %id)
BM845535 lymph node, stomach .f 1340 to 1641 1 to 302       302/302
(100 %)
2 diff
(99.4 %id)
AI871412 anaplastic oligodendroglioma, brain .f 1586 to 2014 429 to 1       429/429
(100 %)
1 diff
(99.8 %id)
BY795325 eye .f 1598 to 2203 1 to 606       606/606
(100 %)
1 diff
(99.9 %id)
AI368609 anaplastic oligodendroglioma, brain .f 1612 to 2014 403 to 1       403/403
(100 %)
1 diff
(99.8 %id)
BF034457 adenocarcinoma, ovary .f 1616 to 2327 1 to 719       719/719
(100 %)
9 diff
(98.8 %id)
AW631203 pooled .f 1628 to 2014 387 to 1       387/387
(100 %)
7 diff
(98.2 %id)
TI_149293848   .f 1765 to 2500 814 to 88   AAA   727/900
(80 %)
11 diff
(98.8 %id)
TI_154135376   .f 1773 to 2531 840 to 86   AAA   755/956
(78 %)
19 diff
(98.1 %id)
DB547117 hippocampus .f 1818 to 2527 1 to 710     Submitted on the opposite strand 710/712
(99 %)
2 diff
(99.8 %id)
BM975280 lung .f 1866 to 2500 652 to 19   AAA   634/634
(100 %)
2 diff
(99.7 %id)
EC460379 Prostate .f 1869 to 1983 113 to 1       113/115
(98 %)
2 diff
(98.3 %id)
EC474886 Prostate .f 1869 to 1983 113 to 1       113/115
(98 %)
2 diff
(98.3 %id)
CV574046 cornea, eye .f 1874 to 2507 636 to 3     Submitted on the opposite strand 634/636
(99 %)
0 diff
(100 %id)
BP323895 Pancreas .f 1897 to 2463 1 to 566   AAA   566/566
(100 %)
8 diff
(98.6 %id)
BU737546 eye, lens .f 2055 to 2529 493 to 19   AAA   475/481
(98 %)
0 diff
(100 %id)
AA630919   .f 2075 to 2495 428 to 7       422/428
(98 %)
0 diff
(100 %id)
BF032843 adenocarcinoma, ovary .f 2111 to 2533 1 to 421   AAA   421/421
(100 %)
2 diff
(99.6 %id)
BM466683 eye, retinoblastoma .f 2163 to 2532 1 to 370   AAA   370/370
(100 %)
2 diff
(99.5 %id)
AI598004 adenocarcinoma, Pancreas .f 2187 to 2495 309 to 1       309/309
(100 %)
1 diff
(99.7 %id)
Z98449 ovary, thymus .f 2204 to 2707 522 to 19   AAA   504/504
(100 %)
3 diff
(99.5 %id)
AI611838 brain, tumor, 5 pooled (see description) .f 2266 to 2522 259 to 2       258/259
(99 %)
0 diff
(100 %id)
DB527723 testis .f 2274 to 2927 1 to 654     Submitted on the opposite strand 654/654
(100 %)
6 diff
(99.1 %id)
F01449 brain, total brain .f 2281 to 2520 240 to 1       240/240
(100 %)
0 diff
(100 %id)
CB070110 Pancreas, Purified pancreatic islet .f 2297 to 2751 1 to 455       455/455
(100 %)
0 diff
(100 %id)
F01751 brain, total brain .f 2316 to 2520 205 to 1       205/205
(100 %)
0 diff
(100 %id)
AI523678 Prostate .f 2685 to 2929 261 to 17   AAA   245/245
(100 %)
0 diff
(100 %id)
AI805059 Prostate .f 2685 to 2929 261 to 17   AAA   245/245
(100 %)
0 diff
(100 %id)
H18376 brain .g-u 1 to 381 1 to 390   tiling clone,   390/413
(94 %)
19 diff
(95.4 %id)
BG179137 adenocarcinoma, cell line, Prostate .g-u 251 to 1026 1 to 768   tiling clone,   768/961
(79 %)
15 diff
(98.5 %id)
H18340 brain .g-u 446 to 814 374 to 1   tiling clone,   374/374
(100 %)
6 diff
(98.4 %id)
AA812057 germinal center B cell .g-u 943 to 1296 1 to 354 P36L E37R tiling clone, Submitted on the opposite strand 354/354
(100 %)
3 diff
(99.2 %id)
BF928842 nervous_tumor .g-u 1146 to 1408 263 to 1   tiling clone, Submitted on the opposite strand 263/263
(100 %)
0 diff
(100 %id)
DB567250 hypothalamus .h 1 to 462 1 to 462 A3G S22X tiling clone, Submitted on the opposite strand 462/462
(100 %)
3 diff
(99.4 %id)
C17780 placenta Gene C4orf42, variant not shown       AAA This clone was ignored    
AK056133   Gene C4orf42, variant not shown       available from FLJ, This clone was ignored    
AK125775 testis Gene C4orf42, variant not shown       available from FLJ, Suspected internal deletion, this clone was ignored    
DB310644 subthalamic nucleus Gene C4orf42, variant not shown         This clone was ignored    
BC111466 Eye, retinoblastoma Gene C4orf42, variant not shown       AAA This clone was ignored    
DB323610   Gene C4orf42, variant not shown         This clone was ignored    
DA699532   Gene C4orf42, variant not shown       capped This clone was ignored    
DB059654 testis Gene C4orf42, variant not shown       capped Suspected internal deletion, this clone was ignored    
DB339138 testis Gene C4orf42, variant not shown         Suspected internal deletion, this clone was ignored    
DB291158 uterus Gene C4orf42, variant not shown       capped This clone was ignored    
DB353048 uterus Gene C4orf42, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c-u, .d, .e, .f, .g-u, .h Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI