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Gene ATPBD4TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
103 supporting clones for gene ATPBD4 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DB118958 thymus .a 1 to 551 2 to 552   tiling clone, capped   551/551
(100 %)
1 diff
(99.9 %id)
DB556027 hypothalamus .a 467 to 917 14 to 465   tiling clone, Submitted on the opposite strand 452/465
(97 %)
9 diff
(98.1 %id)
NM_080650.3   .b 1 to 2046 1 to 2046 exact RefSeq, AAA   2046/2046
(100 %)
0 diff
(100 %id)
DB250468 uterus .b 2 to 591 2 to 591   tiling clone, capped   590/590
(100 %)
2 diff
(99.7 %id)
DA266856 caudate nucleus .b 8 to 558 2 to 552   capped   551/551
(100 %)
2 diff
(99.7 %id)
DA180413 amygdala .b 13 to 582 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA300263 hippocampus .b 31 to 614 2 to 585   capped   584/584
(100 %)
0 diff
(100 %id)
BG707163 brain, hypothalamus .b 36 to 717 1 to 682       682/682
(100 %)
5 diff
(99.3 %id)
CX759340 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .b 36 to 788 1 to 745     Submitted on the opposite strand 747/769
(97 %)
15 diff
(98.1 %id)
BI546687 brain, hippocampus .b 39 to 718 6 to 685       680/685
(99 %)
6 diff
(99.2 %id)
TI_44168703   .b 39 to 718 89 to 768       680/768
(88 %)
6 diff
(99.3 %id)
DA377700 thalamus .b 40 to 608 2 to 571   capped   570/570
(100 %)
3 diff
(99.5 %id)
DA902296   .b 40 to 589 2 to 552   capped   551/551
(100 %)
1 diff
(99.9 %id)
AK094007 uterus .b 41 to 2134 1 to 2093 exact tiling clone, available from FLJ,   2093/2093
(100 %)
2 diff
(100.0 %id)
AX748407   .b 41 to 2134 1 to 2093 exact     2093/2093
(100 %)
2 diff
(100.0 %id)
BP338148 Spleen .b 41 to 619 1 to 580       580/580
(100 %)
1 diff
(99.9 %id)
DA153301 amygdala .b 42 to 605 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA206286 brain .b 42 to 612 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
DA364477 subthalamic nucleus .b 42 to 615 2 to 575   capped   574/574
(100 %)
1 diff
(99.9 %id)
DA766703 tongue .b 42 to 612 2 to 574   capped   573/575
(99 %)
4 diff
(99.4 %id)
DA814990   .b 42 to 607 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA933540 Spleen .b 42 to 613 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DB052871 testis .b 42 to 609 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DB228665 trachea .b 42 to 619 2 to 579   capped   578/578
(100 %)
2 diff
(99.7 %id)
DB253639 uterus .b 42 to 584 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
DA233199 brain .b 46 to 635 2 to 591   capped   590/598
(98 %)
3 diff
(99.5 %id)
DA281186 corpus callosum .b 46 to 618 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
CN366595 embryonic stem cells, cell lines H1, H7, andH9 .b 49 to 693 1 to 645       645/645
(100 %)
1 diff
(99.9 %id)
DA348438 substantia nigra .b 50 to 611 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
DA663802   .b 52 to 617 2 to 568   capped   567/567
(100 %)
2 diff
(99.7 %id)
DA748077   .b 52 to 612 2 to 563   capped   562/562
(100 %)
3 diff
(99.5 %id)
BC066652 Skin, melanotic melanoma. .b 54 to 2024 1 to 1970 exact available from MGC,   1970/1973
(99 %)
3 diff
(99.9 %id)
AW245543 lung, small cell carcinoma .b 54 to 479 10 to 435   fully sequenced,   426/435
(97 %)
6 diff
(98.7 %id)
BQ212769 melanotic melanoma, skin .b 56 to 629 1 to 576       576/904
(63 %)
5 diff
(99.5 %id)
BF184609 bone marrow, from chronic myelogenous leukemia .b 58 to 629 1 to 565   available from MGC,   565/808
(69 %)
9 diff
(98.9 %id)
DA175091 amygdala .b 60 to 622 2 to 565   capped   564/564
(100 %)
1 diff
(99.9 %id)
TI_1948214792   .b 61 to 692 135 to 766   fully sequenced,   632/766
(82 %)
7 diff
(99.1 %id)
TI_1948214962   .b 61 to 725 133 to 799       667/1218
(54 %)
11 diff
(99.1 %id)
TI_1948215141   .b 61 to 660 130 to 729   fully sequenced,   600/729
(82 %)
6 diff
(99.2 %id)
EL735081 mixed .b 63 to 648 1 to 586       586/586
(100 %)
0 diff
(100 %id)
BF131772 hypernephroma, Kidney .b 69 to 636 1 to 566       564/608
(92 %)
17 diff
(97.3 %id)
BX090004 Kidney .b 73 to 566 1 to 495       495/495
(100 %)
1 diff
(99.8 %id)
BM824042 Ascites, stomach .b 73 to 475 1 to 403       403/403
(100 %)
1 diff
(99.8 %id)
BQ432170 melanotic melanoma, skin .b 75 to 724 11 to 665       655/823
(79 %)
6 diff
(99.3 %id)
AL540318 brain, fetal brain .b 79 to 1129 1 to 1042       1042/1043
(99 %)
18 diff
(98.3 %id)
BX445122 brain, fetal brain .b 79 to 938 1 to 852       852/887
(96 %)
14 diff
(98.5 %id)
BC008485 Bone marrow, chronic myelogenous leukemia .b 85 to 2046 1 to 1962   tiling clone, available from MGC, AAA   1962/1962
(100 %)
1 diff
(100.0 %id)
BM909523 lymph, lymphoma, cell line .b 86 to 909 1 to 825   AAA   825/825
(100 %)
4 diff
(99.6 %id)
BU621608 cell lines, Chondrosarcoma .b 179 to 909 748 to 19   AAA   730/738
(98 %)
1 diff
(99.9 %id)
BE737392 adenocarcinoma, Pancreas .b 277 to 909 36 to 664   AAA   629/664
(94 %)
12 diff
(98.2 %id)
FN072427 breast carcinoma .b 408 to 511 104 to 1     Submitted on the opposite strand 104/104
(100 %)
1 diff
(99.1 %id)
AW245988 lung, small cell carcinoma .b 418 to 909 502 to 11   fully sequenced, AAA   492/492
(100 %)
0 diff
(100 %id)
BX433183 brain, fetal brain .b 448 to 1326 878 to 1       878/880
(99 %)
21 diff
(97.7 %id)
BQ351419 head_neck .b 454 to 880 436 to 14       423/444
(95 %)
3 diff
(99.4 %id)
DB532743 hippocampus .b 464 to 909 1 to 448     Submitted on the opposite strand 448/449
(99 %)
10 diff
(97.8 %id)
TI_1948215142   .b 599 to 865 389 to 123   fully sequenced,   267/389
(68 %)
3 diff
(99.3 %id)
AI245807 Kidney .b 604 to 909 327 to 22   AAA   306/306
(100 %)
2 diff
(99.4 %id)
TI_1948214793   .b 662 to 865 326 to 123   fully sequenced,   204/326
(62 %)
0 diff
(100 %id)
CK818929 Islets of Langerhans, Pancreas .b 750 to 1319 1 to 570       570/570
(100 %)
0 diff
(100 %id)
BM126328 Islets of Langerhans, Pancreas .b 766 to 1304 1 to 540       540/540
(100 %)
1 diff
(99.9 %id)
FN047391 breast carcinoma .b 809 to 915 1 to 106       106/109
(97 %)
4 diff
(96.4 %id)
FN141752 breast carcinoma .b 820 to 907 1 to 88       88/90
(97 %)
2 diff
(97.8 %id)
AL568335 brain, fetal brain .b 1049 to 2097 1041 to 1       1041/1124
(92 %)
68 diff
(94.0 %id)
FN169090 breast carcinoma .b 1147 to 1246 1 to 97       97/98
(98 %)
7 diff
(92.9 %id)
BX341918   .b 1258 to 2130 1 to 874   fully sequenced,   874/874
(100 %)
6 diff
(99.4 %id)
BX445121 brain, fetal brain .b 1272 to 2079 808 to 1       808/881
(91 %)
15 diff
(98.3 %id)
AA639052 Ewing's sarcoma .b 1363 to 1725 1 to 361       361/384
(94 %)
10 diff
(97.4 %id)
BM711937 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 1388 to 1762 1 to 375   fully sequenced,   375/375
(100 %)
0 diff
(100 %id)
CK818928 Islets of Langerhans, Pancreas .b 1571 to 2136 567 to 2       566/567
(99 %)
0 diff
(100 %id)
DB351255 uterus .b 1577 to 2134 558 to 1       558/558
(100 %)
0 diff
(100 %id)
AI201390   .b 1595 to 1917 447 to 125       323/447
(72 %)
0 diff
(100 %id)
BF216755 brain, glioblastoma .b 1600 to 2134 1 to 533   AAA   533/533
(100 %)
13 diff
(97.6 %id)
BM126048 Islets of Langerhans, Pancreas .b 1601 to 2136 537 to 2       536/537
(99 %)
0 diff
(100 %id)
BM449861 melanotic melanoma, skin .b 1610 to 2042 1 to 433   AAA   433/452
(95 %)
2 diff
(99.6 %id)
BQ303921 breast .b 1613 to 2110 518 to 20       499/518
(96 %)
0 diff
(100 %id)
AA767663 germinal center B cell .b 1622 to 2046 441 to 17   AAA   425/425
(100 %)
0 diff
(100 %id)
BQ317976 colon .b 1627 to 1983 362 to 6       357/362
(98 %)
0 diff
(100 %id)
BQ317977 colon .b 1627 to 1981 357 to 2       356/357
(99 %)
0 diff
(100 %id)
BQ318179 colon .b 1627 to 1977 352 to 2       351/352
(99 %)
0 diff
(100 %id)
BQ317975 colon .b 1636 to 1979 1 to 342       342/342
(100 %)
12 diff
(96.5 %id)
BX341917   .b 1710 to 2088 401 to 24   fully sequenced,   378/401
(94 %)
11 diff
(97.3 %id)
AW022582 cochlea, ear .b 1713 to 2039 1 to 327   AAA   327/327
(100 %)
5 diff
(98.5 %id)
BM675881 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 1732 to 2131 418 to 19   fully sequenced, AAA   400/400
(100 %)
0 diff
(100 %id)
BG261119 bladder, transitional cell papilloma, cell line .b 1801 to 2130 1 to 330   AAA   330/330
(100 %)
2 diff
(99.4 %id)
CR622071 fetal brain .c 1 to 1998 8 to 2005 exact tiling clone,   2005/2005
(100 %)
0 diff
(100 %id)
DA043193 bladder .d 1 to 578 4 to 582   tiling clone, capped   581/581
(100 %)
1 diff
(99.9 %id)
BX537862 Liver .d 477 to 3889 1 to 3411   tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (13/14 A in genome downstream of last aligned base) 3411/3411
(100 %)
9 diff
(99.8 %id)
FN156673 breast carcinoma .d 544 to 634 1 to 93       93/100
(93 %)
5 diff
(95.0 %id)
BX105508 parathyroid gland, parathyroid tumor .d 919 to 1383 1 to 466       466/466
(100 %)
1 diff
(99.8 %id)
AA854963 parathyroid gland, parathyroid tumor .d 1228 to 1737 524 to 15   AAA   510/510
(100 %)
0 diff
(100 %id)
BF061612 pooled .d 1271 to 1737 485 to 17   AAA   469/469
(100 %)
4 diff
(99.2 %id)
NM_001141972.1   .e 1 to 2379 2 to 2380 exact RefSeq,   2380/2380
(100 %)
0 diff
(100 %id)
AK125017 thalamus .e 11 to 2376 1 to 2366 exact tiling clone, available from FLJ,   2366/2366
(100 %)
3 diff
(99.9 %id)
DA384426 thalamus .e 12 to 642 2 to 632 exact capped   631/631
(100 %)
0 diff
(100 %id)
AL833427 human heart .e 39 to 2381 1 to 2344 Y136H tiling clone, available from DKFZ, AAA   2344/2344
(100 %)
8 diff
(99.7 %id)
CR741495 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .e 1213 to 1715 1 to 504   tiling clone,   504/504
(100 %)
2 diff
(99.7 %id)
BF060803 pooled .e 1803 to 2379 581 to 5       577/581
(99 %)
0 diff
(100 %id)
DB311587 thalamus .e 1857 to 2376 521 to 1       521/521
(100 %)
2 diff
(99.7 %id)
AI922167 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .e 1935 to 2379 447 to 3   tiling clone,   445/447
(99 %)
0 diff
(100 %id)
FN177013 breast carcinoma .e 2230 to 2331 1 to 106       106/106
(100 %)
4 diff
(96.3 %id)
CN366594 embryonic stem cells, DMSO-treated H9 cellline .f 1 to 491 1 to 491   tiling clone,   491/491
(100 %)
0 diff
(100 %id)
BQ632445 Pancreas, Purified pancreatic islet .f 408 to 869 462 to 1   tiling clone,   462/484
(95 %)
7 diff
(98.6 %id)
BM849737 myeloma .g 1 to 569 1 to 569 exact tiling clone,   569/569
(100 %)
3 diff
(99.5 %id)
BE884544 leiomyosarcoma, uterus .g 33 to 683 1 to 666 A15S L16F L18F D19R P20S ... tiling clone,   666/867
(76 %)
16 diff
(98.2 %id)
DA428642 colon .h 1 to 555 2 to 557 exact tiling clone, capped   556/556
(100 %)
1 diff
(99.9 %id)
DA325208 hippocampus .i 1 to 552 2 to 553 exact tiling clone, capped   552/552
(100 %)
0 diff
(100 %id)
BP379131 uterus .j 1 to 574 5 to 578 exact tiling clone,   578/578
(100 %)
1 diff
(99.9 %id)
DB296104 bladder Gene ATPBD4, variant not shown              
DA044456 bladder Gene ATPBD4, variant not shown       capped      
DB254901 uterus Gene ATPBD4, variant not shown       capped This clone was ignored    
BU188010 testis Gene ATPBD4, variant not shown              
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C