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Gene FRMD5TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
74 supporting clones for gene FRMD5 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BC053647 Skin, melanotic melanoma. .a 1 to 2242 1 to 2242 exact tiling clone, available from MGC, AAA   2242/2242
(100 %)
0 diff
(100 %id)
BX281755 melanotic melanoma, skin .a 1 to 487 1 to 487       487/487
(100 %)
0 diff
(100 %id)
NM_032892.3   .a 1 to 2242 1 to 2242 exact RefSeq, AAA   2242/2242
(100 %)
0 diff
(100 %id)
BM468625 melanotic melanoma, skin .a 2 to 909 1 to 912       912/1007
(90 %)
13 diff
(98.8 %id)
BG912896 anaplastic oligodendroglioma with 1p/19qloss, brain .a 5 to 770 1 to 780       780/781
(99 %)
31 diff
(96.1 %id)
DR002328 fetal brain .a 37 to 767 8 to 739       730/739
(98 %)
8 diff
(99.0 %id)
BX280430 anaplastic oligodendroglioma, brain .a 39 to 509 1 to 471       471/471
(100 %)
0 diff
(100 %id)
EL734780 mixed .a 178 to 814 1 to 636       636/651
(97 %)
2 diff
(99.7 %id)
TI_1948216078   .a 178 to 1000 132 to 953   fully sequenced,   822/953
(86 %)
11 diff
(98.9 %id)
TI_1948216239   .a 178 to 1050 132 to 1005   fully sequenced,   874/1005
(86 %)
11 diff
(99.0 %id)
TI_1948216397   .a 178 to 1062 133 to 1019       887/1334
(66 %)
16 diff
(98.9 %id)
TI_1948216556   .a 178 to 966 133 to 921       789/1381
(57 %)
9 diff
(99.4 %id)
CD251954 testis .a 186 to 775 1 to 597       597/897
(66 %)
9 diff
(99.0 %id)
BP359829 thalamus .a 221 to 808 1 to 579       579/582
(99 %)
20 diff
(96.6 %id)
BP359837 thalamus .a 221 to 802 1 to 582       582/582
(100 %)
8 diff
(98.7 %id)
BE907901 epithelioid carcinoma, Pancreas .a 277 to 938 667 to 8     Submitted on the opposite strand 660/946
(69 %)
4 diff
(99.6 %id)
DA215779 brain .a 341 to 887 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
BG749193 eye, normal pigmented retinal epithelium .a 532 to 1313 1 to 778   available from MGC,   778/938
(82 %)
13 diff
(98.7 %id)
TI_1948216079   .a 939 to 1889 1083 to 124   fully sequenced,   958/1081
(88 %)
13 diff
(98.8 %id)
TI_1948216240   .a 1031 to 1889 984 to 124   fully sequenced,   861/984
(87 %)
10 diff
(99.0 %id)
TI_1948216557   .a 1050 to 1889 962 to 123       840/1154
(72 %)
11 diff
(99.1 %id)
TI_1948216398   .a 1051 to 1889 962 to 125       838/1148
(72 %)
7 diff
(99.4 %id)
AK123018   .b 1 to 2317 2 to 2317 E365* tiling clone, available from FLJ,   2317/2317
(100 %)
3 diff
(99.9 %id)
DA018741   .b 1 to 695 2 to 696   capped   695/695
(100 %)
1 diff
(99.9 %id)
BQ646863 hepatocellular carcinoma, cell line, Liver .b 1007 to 1839 1 to 842   tiling clone,   842/943
(89 %)
20 diff
(97.9 %id)
DB295472   .b 1863 to 2317 454 to 1   tiling clone,   454/454
(100 %)
2 diff
(99.6 %id)
BU506663 mixed (pool of 40 RNAs) .b 1877 to 2318 1 to 442       442/931
(47 %)
1 diff
(99.9 %id)
AI401118 B-cell, chronic lymphotic leukemia .b 1975 to 2318 346 to 3       344/346
(99 %)
0 diff
(100 %id)
DA276649 corpus callosum .b 2053 to 2624 2 to 573   tiling clone, capped   572/572
(100 %)
0 diff
(100 %id)
CN265627 embryonic stem cells, cell lines H1, H7, andH9 .b 2267 to 2891 1 to 625       625/625
(100 %)
5 diff
(99.2 %id)
AA013062 eye, retina .b 2287 to 2693 1 to 412       412/412
(100 %)
8 diff
(98.1 %id)
AI287558 placenta .b 2355 to 2724 1 to 370     Submitted on the opposite strand 370/370
(100 %)
0 diff
(100 %id)
CN290874 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .b 2402 to 2716 1 to 315       315/315
(100 %)
0 diff
(100 %id)
CN291901 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .b 2464 to 3199 1 to 736   tiling clone,   736/736
(100 %)
0 diff
(100 %id)
BX645122   .b 3351 to 4097 1 to 747   tiling clone,   747/747
(100 %)
1 diff
(99.9 %id)
R52430 whole brain .b 3439 to 3844 1 to 412       412/412
(100 %)
9 diff
(97.9 %id)
H08342 whole brain .b 3439 to 3895 1 to 468       468/477
(98 %)
21 diff
(95.6 %id)
BQ638832 eye, retina .b 3452 to 3924 1 to 473       473/473
(100 %)
0 diff
(100 %id)
Z42067 brain, total brain .b 3543 to 3791 1 to 249       249/249
(100 %)
0 diff
(100 %id)
CF457249 peripheral nervous system .b 3577 to 4275 42 to 740   tiling clone,   699/741
(94 %)
1 diff
(99.9 %id)
AA095285   .b 3615 to 3841 1 to 226       226/226
(100 %)
4 diff
(98.3 %id)
CD238998 Pituitary .b 3733 to 4436 1 to 703       703/718
(97 %)
30 diff
(95.9 %id)
Z44028 brain, total brain .b 3848 to 4188 1 to 340       340/340
(100 %)
1 diff
(99.8 %id)
F05251 brain, total brain .b 3848 to 4042 1 to 195       195/198
(98 %)
4 diff
(98.0 %id)
R13748 whole brain .b 3849 to 4214 1 to 371       371/453
(81 %)
8 diff
(98.3 %id)
H14747 whole brain .b 3849 to 4238 1 to 400       400/487
(82 %)
13 diff
(97.4 %id)
AW294986   .b 4251 to 4828 595 to 18   tiling clone, AAA   578/578
(100 %)
0 diff
(100 %id)
AW295520   .b 4272 to 4828 574 to 18   AAA   557/557
(100 %)
1 diff
(99.9 %id)
AA059478 eye, retina .b 4280 to 4829 549 to 1       549/570
(96 %)
1 diff
(99.9 %id)
AW473478 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .b 4322 to 4828 507 to 1       507/512
(99 %)
0 diff
(100 %id)
BX113349 whole brain .b 4342 to 4827 500 to 15   AAA   486/486
(100 %)
1 diff
(99.8 %id)
AI421905 brain, glioblastoma (pooled) .b 4379 to 4821 443 to 1       443/443
(100 %)
0 diff
(100 %id)
H08343 whole brain .b 4447 to 4834 394 to 3       392/394
(99 %)
0 diff
(100 %id)
AA012975 eye, retina .b 4460 to 4829 371 to 1       371/371
(100 %)
1 diff
(99.8 %id)
R38594 whole brain .b 4511 to 4834 337 to 4       334/408
(81 %)
0 diff
(100 %id)
Z38349 brain, total brain .b 4571 to 4832 262 to 1   tiling clone,   262/262
(100 %)
1 diff
(99.7 %id)
F03248 brain, total brain .b 4661 to 4828 168 to 1       168/168
(100 %)
0 diff
(100 %id)
BC020191 Eye, normal, pigmented retinal epithelium .c 1 to 1531 1 to 1531 E318D tiling clone, available from MGC, AAA   1531/1531
(100 %)
1 diff
(100.0 %id)
BC043486 Skin, melanotic melanoma. .d 1 to 2627 2 to 2628 exact tiling clone, available from MGC, AAA   2627/2628
(99 %)
6 diff
(99.8 %id)
BM549537 melanotic melanoma, skin .d 1 to 951 39 to 995   available from MGC,   957/1080
(88 %)
26 diff
(97.6 %id)
DN993368 brain, whole brain .d 1037 to 1659 1 to 623       623/623
(100 %)
5 diff
(99.2 %id)
CN366742 embryonic stem cells, cell lines H1, H7, andH9 .d 1067 to 1816 13 to 762       750/762
(98 %)
6 diff
(99.3 %id)
BM847095 myeloma .d 1121 to 1500 1 to 381       381/381
(100 %)
1 diff
(99.8 %id)
BC007796 Muscle, rhabdomyosarcoma .e 1 to 2777 1 to 2777 exact tiling clone, available from MGC, AAA   2777/2777
(100 %)
1 diff
(100.0 %id)
DA664643   .e 833 to 1386 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
AK290013 hippocampus .e 1422 to 2482 1 to 1061   tiling clone,   1061/1061
(100 %)
0 diff
(100 %id)
DA330338 hippocampus .e 1423 to 1972 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
AI417669 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .e 2129 to 2519 391 to 1       391/391
(100 %)
2 diff
(99.5 %id)
DA193238 amygdala .f 1 to 591 2 to 592   tiling clone, capped   591/591
(100 %)
0 diff
(100 %id)
DA020150   .f 1943 to 2508 2 to 566   tiling clone, capped   565/565
(100 %)
1 diff
(99.9 %id)
DA713668   .f 2097 to 2679 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
DA356233 subthalamic nucleus .f 2279 to 2832 2 to 555   tiling clone, capped   554/554
(100 %)
0 diff
(100 %id)
DB173044 kidney, tumor tissue .f 2288 to 2762 2 to 479   capped   478/480
(99 %)
5 diff
(99.0 %id)
CR748225 germinal center B cell .f 2302 to 2772 471 to 1     Submitted on the opposite strand 471/471
(100 %)
0 diff
(100 %id)
AA376926 small intestine .f 2343 to 2539 1 to 197       197/197
(100 %)
0 diff
(100 %id)
BM016407 breast, mammary adenocarcinoma, cell line .f 2625 to 3587 20 to 991   tiling clone,   972/1022
(95 %)
51 diff
(95.1 %id)
TI_59393336   .f 2625 to 3587 108 to 1079       972/1022
(95 %)
51 diff
(95.1 %id)
DB303448 amygdala .f 3755 to 4301 547 to 1   tiling clone,   547/547
(100 %)
0 diff
(100 %id)
DB295523   .f 3769 to 4301 533 to 1       533/533
(100 %)
0 diff
(100 %id)
BF949738 nervous_normal .g 1 to 509 16 to 524 L4C L5* tiling clone,   509/531
(95 %)
10 diff
(98.2 %id)
DA332656 hippocampus .h 1 to 589 2 to 590 S69F tiling clone, capped   589/589
(100 %)
2 diff
(99.7 %id)
AA812895   .i-u 1 to 312 310 to 1 A42V tiling clone,   310/310
(100 %)
4 diff
(98.8 %id)
AK090572   Gene FRMD5, variant not shown       available from FLJ, This clone was ignored    
DB295611   Gene FRMD5, variant not shown         This clone was ignored    
DA023123   Gene FRMD5, variant not shown       capped This clone was ignored    
AX746516   Gene FRMD5, variant not shown         This clone was ignored    
AI870513 anaplastic oligodendroglioma, brain Gene FRMD5, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI