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Gene BEST3TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
95 supporting clones for gene BEST3 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AK096459 tongue BEST3.a 1 to 2498 2 to 2500 exact tiling clone, available from FLJ,   2500/2500
(100 %)
2 diff
(100.0 %id)
NM_032735.2   BEST3.a 1 to 3530 2 to 3531 exact RefSeq, AAA   3531/3531
(100 %)
0 diff
(100 %id)
DA767581 tongue BEST3.a 1 to 576 2 to 578   capped   577/577
(100 %)
2 diff
(99.7 %id)
AY515706   BEST3.a 227 to 2233 1 to 2007 exact tiling clone,   2007/2007
(100 %)
0 diff
(100 %id)
AW888362 nervous_tumor BEST3.a 1326 to 1640 16 to 333       318/333
(95 %)
6 diff
(98.2 %id)
TI_2016727799   BEST3.a 1673 to 2834 1147 to 6   tiling clone,   1142/1272
(89 %)
0 diff
(100 %id)
TI_2016727795   BEST3.a 1711 to 2742 1 to 1026       1026/1233
(83 %)
11 diff
(99.2 %id)
DB325520 tongue BEST3.a 1957 to 2498 544 to 1       544/544
(100 %)
2 diff
(99.7 %id)
BE245306 leukopheresis BEST3.a 2139 to 2446 1 to 307       307/307
(100 %)
1 diff
(99.7 %id)
BE153702 head_neck BEST3.a 2432 to 3006 18 to 592       575/592
(97 %)
6 diff
(99.0 %id)
BE153572 head_neck BEST3.a 2448 to 2983 1 to 536       536/540
(99 %)
3 diff
(99.5 %id)
AW382767 head_neck BEST3.a 2515 to 3124 608 to 1       608/614
(99 %)
8 diff
(98.7 %id)
CR745767 carcinoid, lung BEST3.a 2515 to 3007 1 to 493   tiling clone,   493/493
(100 %)
0 diff
(100 %id)
CV360617 head_neck BEST3.a 2644 to 2997 354 to 1     Submitted on the opposite strand 354/354
(100 %)
1 diff
(99.8 %id)
BE153835 head_neck BEST3.a 2689 to 3117 430 to 2     Submitted on the opposite strand 429/511
(83 %)
0 diff
(100 %id)
CV360608 head_neck BEST3.a 2695 to 2997 303 to 1     Submitted on the opposite strand 303/303
(100 %)
5 diff
(98.4 %id)
TI_2016727811   BEST3.a 2754 to 3321 1 to 568   tiling clone,   568/1276
(44 %)
4 diff
(99.7 %id)
BF350592 head_neck BEST3.a 3012 to 3140 129 to 1       129/129
(100 %)
3 diff
(97.7 %id)
AA878383 carcinoid, lung BEST3.a 3068 to 3531 463 to 1       463/463
(100 %)
1 diff
(99.8 %id)
AW674562 cervical carcinoma cell line, cervix BEST3.a 3129 to 3531 410 to 8   available from MGC,   403/410
(98 %)
0 diff
(100 %id)
AI268770 carcinoid, lung BEST3.a 3161 to 3531 375 to 5   tiling clone,   371/375
(98 %)
0 diff
(100 %id)
AA953908 2 pooled tumors (clear cell type), Kidney BEST3.a 3186 to 3530 345 to 1       345/345
(100 %)
1 diff
(99.8 %id)
AI302692 carcinoid, lung BEST3.a 3199 to 3531 339 to 7       333/339
(98 %)
0 diff
(100 %id)
AI311115 2 pooled tumors (clear cell type), Kidney BEST3.a 3254 to 3531 280 to 3       278/280
(99 %)
0 diff
(100 %id)
BC151138 Brain, cerebral cortex, PCR rescued clones BEST3.b 1 to 2929 1 to 2929 exact tiling clone,   2929/2929
(100 %)
2 diff
(100.0 %id)
BC028087 Cervix, carcinoma BEST3.c 1 to 2878 12 to 2889 Q269* tiling clone, available from MGC, AAA   2878/2878
(100 %)
2 diff
(100.0 %id)
NM_152439.2   BEST3.c 2 to 2878 1 to 2877 exact RefSeq, AAA   2877/2877
(100 %)
0 diff
(100 %id)
AW674392 cervical carcinoma cell line, cervix BEST3.c 4 to 437 1 to 434   available from MGC,   434/441
(98 %)
10 diff
(97.8 %id)
BF132128 hypernephroma, Kidney BEST3.c 52 to 664 1 to 611   tiling clone,   611/611
(100 %)
8 diff
(98.7 %id)
TI_1948074676   BEST3.c 205 to 1017 945 to 130       816/1275
(64 %)
11 diff
(99.2 %id)
TI_1948074859   BEST3.c 205 to 1017 120 to 934   fully sequenced, AAA   815/934
(87 %)
54 diff
(94.3 %id)
CV030451 mixed BEST3.c 214 to 787 1 to 574       574/574
(100 %)
1 diff
(99.9 %id)
TI_1948074302   BEST3.c 218 to 1017 934 to 128   tiling clone,   807/1352
(59 %)
11 diff
(99.2 %id)
TI_1948074488   BEST3.c 218 to 1017 932 to 131       802/1306
(61 %)
10 diff
(99.3 %id)
TI_1948074860   BEST3.c 411 to 1017 738 to 131   fully sequenced,   608/738
(82 %)
1 diff
(99.9 %id)
AF440758   BEST3.d 1 to 1506 1 to 1506 exact tiling clone,   1506/1506
(100 %)
1 diff
(100.0 %id)
BG189080   BEST3.d 414 to 617 19 to 222       204/222
(91 %)
6 diff
(97.3 %id)
BG202448   BEST3.d 421 to 520 1 to 100       100/100
(100 %)
1 diff
(99.0 %id)
DN992083 brain, whole brain BEST3.e 1 to 718 1 to 717   tiling clone,   717/722
(99 %)
7 diff
(99.1 %id)
BE793366 lung, small cell carcinoma BEST3.e 320 to 1133 1 to 809   tiling clone,   809/821
(98 %)
19 diff
(97.7 %id)
CR614874 B cells (Ramos cell line) Cot 25-normalized BEST3.f 1 to 1692 1 to 1692 exact tiling clone,   1692/1692
(100 %)
0 diff
(100 %id)
BX342845   BEST3.f 1 to 1130 1 to 1118 E93K E187X     1118/1123
(99 %)
28 diff
(97.6 %id)
BX390957   BEST3.f 799 to 1692 1 to 884       884/884
(100 %)
22 diff
(97.6 %id)
BX393329   BEST3.f 844 to 1727 890 to 1   tiling clone,   890/915
(97 %)
40 diff
(95.7 %id)
BF218541 brain, glioblastoma BEST3.g 1 to 699 1 to 701 W20G V21F P22H F23S I24S ... tiling clone,   699/720
(97 %)
30 diff
(95.9 %id)
BX401505   BEST3.h 1 to 536 1 to 537   tiling clone,   537/537
(100 %)
16 diff
(97.1 %id)
BX349342   BEST3.h 318 to 1187 1 to 867   tiling clone,   867/867
(100 %)
13 diff
(98.6 %id)
DA766706 tongue BEST3.i 1 to 573 2 to 573 T2X L52F L53T L54Y T55R ... tiling clone, capped   574/572
(100 %)
7 diff
(98.8 %id)
BP257202 heart BEST3.j 1 to 556 1 to 557 E21X L23I S24I I25N Y26L ... tiling clone,   557/557
(100 %)
2 diff
(99.7 %id)
DA086679 cerebellum BEST3.k 1 to 535 2 to 536   tiling clone, capped   535/535
(100 %)
2 diff
(99.7 %id)
AV757060 bone marrow BEST3.k 115 to 752 112 to 749 exact tiling clone, AAA   638/645
(98 %)
6 diff
(99.1 %id)
BI225734 Burkitt lymphoma, lymph BEST3.k 142 to 841 1 to 699 exact     699/699
(100 %)
7 diff
(99.0 %id)
BC006440 Lymph, Burkitt lymphoma BEST3.k 143 to 1871 1 to 1729 exact tiling clone, available from MGC, AAA   1729/1729
(100 %)
8 diff
(99.6 %id)
BE267947 Burkitt lymphoma, lymph BEST3.k 162 to 815 1 to 647 M48N D49G H50P V51R V52G ... available from MGC,   647/687
(94 %)
15 diff
(97.9 %id)
BG819513 anaplastic oligodendroglioma with 1p/19qloss, brain BEST3.k 251 to 1008 1 to 759 exact     759/772
(98 %)
37 diff
(95.3 %id)
TI_1948241148   BEST3.k 270 to 899 326 to 963 H9L G10R D12Y R24P Y25C ...     640/1231
(51 %)
50 diff
(96.0 %id)
AA729611 alveolar rhabdomyosarcoma BEST3.k 272 to 622 1 to 349 exact     349/349
(100 %)
7 diff
(98.0 %id)
AW975911   BEST3.k 273 to 751 104 to 582 exact AAA   479/582
(82 %)
9 diff
(98.5 %id)
AA777061 heart BEST3.k 298 to 749 452 to 1 exact     452/452
(100 %)
1 diff
(99.8 %id)
EL737195 mixed BEST3.k 343 to 711 1 to 369 exact     369/369
(100 %)
3 diff
(99.2 %id)
TI_1948240580   BEST3.k 509 to 884 565 to 960       396/1288
(30 %)
12 diff
(99.1 %id)
TI_1948240581   BEST3.k 510 to 1097 570 to 1160       591/1257
(47 %)
6 diff
(99.6 %id)
TI_1948240314   BEST3.k 612 to 1056 678 to 1134       457/1188
(38 %)
48 diff
(96.0 %id)
TI_1948240315   BEST3.k 612 to 1008 671 to 1070       400/1248
(32 %)
6 diff
(99.6 %id)
TI_1948240872   BEST3.k 615 to 1050 665 to 1089       425/1227
(34 %)
30 diff
(97.6 %id)
CX873470 embryonic stem BEST3.k 724 to 1487 1 to 764       764/764
(100 %)
7 diff
(99.1 %id)
AI692649 carcinoid, lung BEST3.k 1322 to 1875 554 to 1       554/554
(100 %)
4 diff
(99.3 %id)
BE219263 carcinoid, lung BEST3.k 1343 to 1875 533 to 1       533/533
(100 %)
4 diff
(99.3 %id)
AW612705 carcinoid, lung BEST3.k 1396 to 1875 480 to 1       480/480
(100 %)
4 diff
(99.2 %id)
BF433970 carcinoid, lung BEST3.k 1402 to 1875 475 to 1       475/475
(100 %)
4 diff
(99.2 %id)
AI681290 carcinoid, lung BEST3.k 1410 to 1875 467 to 1       467/467
(100 %)
4 diff
(99.2 %id)
AI800728 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus BEST3.k 1431 to 1872 442 to 1       442/442
(100 %)
2 diff
(99.6 %id)
AI040144   BEST3.k 1471 to 1875 405 to 1   tiling clone,   405/405
(100 %)
2 diff
(99.6 %id)
AW297882   BEST3.l-u 1 to 463 478 to 16   tiling clone,   463/478
(96 %)
0 diff
(100 %id)
BE245334 leukopheresis BEST3.l-u 2 to 348 347 to 1   tiling clone,   347/347
(100 %)
0 diff
(100 %id)
AI689916 carcinoid, lung BEST3.l-u 438 to 885 1 to 448   tiling clone, Submitted on the opposite strand 448/448
(100 %)
0 diff
(100 %id)
BQ932613 sciatic nerve BEST3.l-u 462 to 1328 1 to 881 exact tiling clone, AAA   881/889
(99 %)
28 diff
(96.9 %id)
N41153   BEST3.l-u 474 to 818 1 to 345   AAA Possibly primed on the genome, locally A rich (11/12 A in genome downstream of last aligned base) 345/345
(100 %)
4 diff
(98.9 %id)
BE222098 carcinoid, lung BEST3.l-u 818 to 1337 520 to 1       520/520
(100 %)
1 diff
(99.9 %id)
BE551115 carcinoid, lung BEST3.l-u 879 to 1337 460 to 1   tiling clone,   460/471
(97 %)
1 diff
(99.8 %id)
AA953746 carcinoid, lung BEST3.l-u 963 to 1337 375 to 1       375/375
(100 %)
0 diff
(100 %id)
AI457519 carcinoid, lung BEST3.l-u 1022 to 1337 318 to 3       316/318
(99 %)
0 diff
(100 %id)
CR612373 B cells (Ramos cell line) Cot 25-normalized BEST3.m 1 to 1132 1 to 1132 exact tiling clone,   1132/1132
(100 %)
0 diff
(100 %id)
BX343276   BEST3.m 1 to 405 1 to 419       416/509
(81 %)
20 diff
(96.1 %id)
BX374313   BEST3.m 490 to 1074 591 to 1       591/706
(83 %)
23 diff
(96.8 %id)
BQ955380 sciatic nerve BEST3.n-u 1 to 885 1 to 894 exact tiling clone,   894/901
(99 %)
21 diff
(97.7 %id)
AL598355   BEST3.o -8 to 662 1 to 671 exact tiling clone,   671/671
(100 %)
2 diff
(99.8 %id)
BP225850   BEST3.p 1 to 581 1 to 581 exact tiling clone,   581/581
(100 %)
0 diff
(100 %id)
AA992681   BEST3.q-u 1 to 371 371 to 1 exact tiling clone,   371/371
(100 %)
0 diff
(100 %id)
AA779910 liver and spleen BEST3.q-u 66 to 549 482 to 1 exact tiling clone,   482/482
(100 %)
1 diff
(99.8 %id)
AI052096 liver and spleen BEST3.q-u 102 to 546 443 to 1 exact     443/443
(100 %)
1 diff
(99.8 %id)
BE706676 head_neck BEST3.r-u 1 to 495 523 to 25 H14A G15R R16A L17P L18A ... tiling clone,   499/523
(95 %)
0 diff
(100 %id)
AW296449   BEST3.s-u 1 to 405 422 to 18 exact tiling clone, AAA   405/405
(100 %)
2 diff
(99.6 %id)
F28060 pectoral muscle (after mastectomy) BEST3.s-u 45 to 405 1 to 361 exact tiling clone, AAA   361/361
(100 %)
1 diff
(99.8 %id)
BF739974 Kidney BEST3.t 1 to 386 389 to 4 exact tiling clone,   386/389
(99 %)
0 diff
(100 %id)
TI_2016727809   Gene BEST3, variant not shown         Suspected internal deletion, this clone was ignored    
AA872699 pooled germ cell tumors Gene BEST3, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l-u, .m, .n-u, .o, .p, .q-u, .r-u, .s-u, .t Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C