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Gene AGPAT9TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
127 supporting clones for gene AGPAT9 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BP246851 Kidney .a 1 to 583 1 to 583   tiling clone,   583/583
(100 %)
0 diff
(100 %id)
BM452132 melanotic melanoma, skin .a 95 to 897 20 to 836       817/1055
(77 %)
32 diff
(97.0 %id)
BP274955 Kidney .a 133 to 716 1 to 584       584/584
(100 %)
0 diff
(100 %id)
AK055749 Kidney .a 134 to 2436 1 to 2303   tiling clone, available from FLJ,   2303/2303
(100 %)
1 diff
(100.0 %id)
BP258572 heart .a 134 to 714 1 to 581       581/581
(100 %)
0 diff
(100 %id)
BP276573 Kidney .a 134 to 714 1 to 581       581/581
(100 %)
0 diff
(100 %id)
DA629110 Kidney .a 134 to 710 2 to 578   capped   577/577
(100 %)
2 diff
(99.7 %id)
DA632514 Kidney .a 134 to 701 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA050544   .a 135 to 630 2 to 497   capped   496/496
(100 %)
0 diff
(100 %id)
DA050920   .a 135 to 710 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DA052730   .a 135 to 700 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA619075   .a 135 to 682 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
DA619607   .a 135 to 693 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA620260   .a 135 to 705 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA621424 Kidney .a 135 to 616 2 to 483   capped   482/482
(100 %)
0 diff
(100 %id)
DA623462 Kidney .a 135 to 671 2 to 538   capped   537/537
(100 %)
0 diff
(100 %id)
DA623618 Kidney .a 135 to 677 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
DA624704 Kidney .a 135 to 669 2 to 536   capped   535/535
(100 %)
0 diff
(100 %id)
DA626791 Kidney .a 135 to 697 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
DA629761 Kidney .a 135 to 430 2 to 297   capped   296/296
(100 %)
0 diff
(100 %id)
DA630836 Kidney .a 135 to 692 2 to 561   capped   560/560
(100 %)
2 diff
(99.7 %id)
DA631081 Kidney .a 135 to 696 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DA631738 Kidney .a 135 to 717 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
DA634377 Kidney .a 135 to 689 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
DA635005 Kidney .a 135 to 700 2 to 567   capped   566/566
(100 %)
1 diff
(99.9 %id)
DA635609 Kidney .a 135 to 700 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DB180732 kidney, tumor tissue .a 135 to 703 2 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
AK223543 Kidney .a 162 to 2277 1 to 2115   tiling clone,   2115/2115
(100 %)
4 diff
(99.9 %id)
DB320402 Kidney .a 1898 to 2436 540 to 1       540/540
(100 %)
1 diff
(99.9 %id)
DA128414 cerebellum .b 1 to 591 2 to 593   tiling clone, capped   592/592
(100 %)
3 diff
(99.5 %id)
DA884048   .b 69 to 595 2 to 529   tiling clone, capped   528/528
(100 %)
2 diff
(99.7 %id)
DA869260 Prostate .b 203 to 744 2 to 542   tiling clone, capped   541/541
(100 %)
1 diff
(99.9 %id)
DA673378   .b 278 to 854 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DA595873 lung .b 279 to 840 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
BP279014   .b 279 to 867 1 to 589       589/589
(100 %)
1 diff
(99.9 %id)
DQ345298   .b 280 to 2992 1 to 2713   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 2713/2713
(100 %)
0 diff
(100 %id)
BC090956 testis .b 371 to 2992 1 to 2622   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 2622/2622
(100 %)
0 diff
(100 %id)
CD557431 testis .b 371 to 1210 11 to 864       854/954
(89 %)
23 diff
(97.6 %id)
DB018887 esophageal, tumor tissue .b 430 to 995 2 to 567   capped   566/566
(100 %)
2 diff
(99.7 %id)
DA624385 Kidney .b 440 to 981 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
DA631339 Kidney .b 442 to 1008 8 to 574   capped   567/567
(100 %)
0 diff
(100 %id)
DA665254   .b 442 to 923 10 to 492   capped   483/483
(100 %)
1 diff
(99.8 %id)
DA628944 Kidney .b 444 to 685 2 to 243   capped   242/242
(100 %)
0 diff
(100 %id)
DB197102 trachea .b 444 to 1017 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DB048321 testis .b 449 to 979 10 to 542   capped   533/541
(98 %)
6 diff
(98.9 %id)
DA590795 lung .b 455 to 923 2 to 471   capped   470/470
(100 %)
1 diff
(99.8 %id)
AY358100   .b 460 to 2993 1 to 2534   tiling clone,   2534/2534
(100 %)
0 diff
(100 %id)
NM_032717.3   .b 460 to 2993 1 to 2534   RefSeq,   2534/2534
(100 %)
0 diff
(100 %id)
DQ324782   .b 580 to 1887 1 to 1308       1308/1308
(100 %)
0 diff
(100 %id)
BE899525 adenocarcinoma cell line, ovary .b 737 to 1490 36 to 782       747/956
(78 %)
29 diff
(97.0 %id)
DA625384 Kidney .b 769 to 1302 2 to 535   capped   534/534
(100 %)
1 diff
(99.9 %id)
BG576374 breast, mammary adenocarcinoma, cell line .b 863 to 1719 1 to 858       858/860
(99 %)
9 diff
(99.0 %id)
AB075872   .b 1079 to 2995 1 to 1915       1915/1920
(99 %)
3 diff
(99.9 %id)
BJ993183 hepatoblastoma .b 1079 to 1609 1 to 531       531/531
(100 %)
0 diff
(100 %id)
BP306563   .b 1220 to 1776 1 to 557       557/557
(100 %)
2 diff
(99.7 %id)
BC073136 Peripheral Nervous System, sympathetictrunk .b 1301 to 2992 1 to 1692   available from MGC, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 1692/1692
(100 %)
1 diff
(100.0 %id)
BQ889869 sympathetic trunk .b 1302 to 2067 1 to 771   available from MGC,   771/862
(89 %)
7 diff
(99.2 %id)
BE005343 breast_normal .b 1312 to 1708 411 to 16     Submitted on the opposite strand 397/411
(96 %)
0 diff
(100 %id)
BP353081   .b 1432 to 2015 1 to 583       583/583
(100 %)
1 diff
(99.9 %id)
CB115554 Liver .b 1443 to 2074 1 to 631       631/631
(100 %)
2 diff
(99.7 %id)
CB122096 Liver .b 1443 to 1903 1 to 461       461/461
(100 %)
0 diff
(100 %id)
CB119636 Liver .b 1443 to 1945 1 to 503       503/503
(100 %)
0 diff
(100 %id)
BM795376 stomach .b 1464 to 1907 1 to 444       444/444
(100 %)
1 diff
(99.8 %id)
BE899531 adenocarcinoma cell line, ovary .b 1489 to 2123 31 to 660   available from MGC,   630/660
(95 %)
10 diff
(98.5 %id)
BC006236 Ovary, adenocarcinoma .b 1496 to 2992 1 to 1495   available from MGC, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 1495/1495
(100 %)
6 diff
(99.6 %id)
CN367036 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .b 1640 to 2359 1 to 717       717/717
(100 %)
9 diff
(98.8 %id)
BG171293 hypernephroma, cell line, Kidney .b 1698 to 2494 1 to 798       798/1011
(78 %)
31 diff
(97.0 %id)
BM551856 melanotic melanoma, skin .b 1743 to 2525 1 to 789       789/1036
(76 %)
15 diff
(98.6 %id)
BG199996   .b 1781 to 2358 1 to 576       576/883
(65 %)
29 diff
(96.8 %id)
BG215718   .b 1783 to 2630 1 to 838       838/888
(94 %)
35 diff
(96.1 %id)
BG187679   .b 1784 to 2385 1 to 600       600/779
(77 %)
24 diff
(97.0 %id)
AI239607 pooled .b 1789 to 2176 388 to 1       388/388
(100 %)
0 diff
(100 %id)
BG221285   .b 1807 to 2099 1 to 292       292/292
(100 %)
4 diff
(98.7 %id)
BG204100   .b 1810 to 2628 41 to 851       811/855
(94 %)
5 diff
(99.5 %id)
BF183144 large cell carcinoma, lung .b 1852 to 2540 1 to 676       676/713
(94 %)
17 diff
(97.7 %id)
BM271871 Pancreas, Purified pancreatic islet .b 1892 to 2444 1 to 552       552/552
(100 %)
2 diff
(99.7 %id)
BE785354 large cell carcinoma, lung .b 1901 to 2523 47 to 671       625/1057
(59 %)
25 diff
(97.7 %id)
CK824841 Pancreas, Purified pancreatic islet .b 1917 to 2490 1 to 573     Submitted on the opposite strand 573/573
(100 %)
2 diff
(99.7 %id)
BQ932495 large cell carcinoma, lung .b 1938 to 2776 60 to 906       847/936
(90 %)
6 diff
(99.4 %id)
AI765384 2 pooled tumors (clear cell type), Kidney .b 1985 to 2490 1 to 506     Submitted on the opposite strand 506/506
(100 %)
3 diff
(99.5 %id)
FN080691 breast carcinoma .b 1997 to 2090 1 to 90       90/97
(92 %)
5 diff
(94.9 %id)
CA503037 Human Lung Epithelial cells, lung .b 2001 to 2667 685 to 19   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 667/677
(98 %)
3 diff
(99.6 %id)
TI_154044416   .b 2063 to 2992 996 to 88   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 909/935
(97 %)
31 diff
(96.7 %id)
CK824842 Pancreas, Purified pancreatic islet .b 2083 to 2673 591 to 1     Submitted on the opposite strand 591/591
(100 %)
3 diff
(99.5 %id)
BM264505 Pancreas, Purified pancreatic islet .b 2091 to 2666 576 to 1       576/576
(100 %)
3 diff
(99.5 %id)
BG421830 Kidney, renal cell adenocarcinoma .b 2172 to 2903 1 to 729       729/862
(84 %)
24 diff
(97.3 %id)
BG577283 breast, mammary adenocarcinoma, cell line .b 2174 to 2995 1 to 822       822/835
(98 %)
27 diff
(96.8 %id)
BP297597   .b 2176 to 2667 1 to 491   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 491/491
(100 %)
1 diff
(99.8 %id)
AA398819   .b 2183 to 2571 1 to 389       389/389
(100 %)
2 diff
(99.5 %id)
BF568185 epithelioid carcinoma cell line, Pancreas .b 2192 to 2893 1 to 703       703/806
(87 %)
34 diff
(95.8 %id)
BX098764   .b 2236 to 2899 1 to 664       664/664
(100 %)
0 diff
(100 %id)
AA476677   .b 2236 to 2693 1 to 458       458/458
(100 %)
0 diff
(100 %id)
AA449292   .b 2236 to 2594 1 to 359   fully sequenced,   359/359
(100 %)
0 diff
(100 %id)
FN156484 breast carcinoma .b 2256 to 2341 1 to 81       81/82
(98 %)
5 diff
(94.0 %id)
CD638871 pooled .b 2315 to 2975 1 to 656       656/665
(98 %)
14 diff
(97.9 %id)
BQ323584 colon_ins .b 2319 to 2581 1 to 263       263/263
(100 %)
14 diff
(94.7 %id)
CA411740 Chondrosarcoma Grade II, Left Pelvis .b 2330 to 2992 683 to 19   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 665/665
(100 %)
3 diff
(99.6 %id)
AI369488   .b 2338 to 2670 333 to 1       333/333
(100 %)
1 diff
(99.7 %id)
FN066879 breast carcinoma .b 2407 to 2505 101 to 1     Submitted on the opposite strand 101/114
(88 %)
3 diff
(97.4 %id)
BJ993184 hepatoblastoma .b 2416 to 2956 540 to 1       540/540
(100 %)
1 diff
(99.9 %id)
TI_157599527   .b 2440 to 2992 636 to 83   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 554/1085
(51 %)
20 diff
(98.2 %id)
AI028202   .b 2441 to 2850 412 to 1       412/412
(100 %)
4 diff
(99.1 %id)
AI052530   .b 2443 to 2995 555 to 3       553/555
(99 %)
0 diff
(100 %id)
BM855865 stomach .b 2510 to 2723 1 to 213       213/213
(100 %)
2 diff
(99.1 %id)
AA449236   .b 2564 to 2995 432 to 1   tiling clone, fully sequenced,   432/432
(100 %)
0 diff
(100 %id)
BE349224 malignant melanoma, metastatic to lymphnode, skin .b 2564 to 2992 430 to 1       430/430
(100 %)
1 diff
(99.8 %id)
AA843870 parathyroid gland, parathyroid tumor .b 2566 to 2992 439 to 12   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 428/428
(100 %)
1 diff
(99.8 %id)
CF529151 placenta .b 2578 to 2992 432 to 18   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 415/415
(100 %)
1 diff
(99.8 %id)
AA514936 breast .b 2581 to 2995 417 to 2       416/417
(99 %)
0 diff
(100 %id)
AA863345 Kidney .b 2582 to 2993 413 to 1       413/413
(100 %)
1 diff
(99.8 %id)
D20936   .b 2589 to 2710 1 to 123     Submitted on the opposite strand 123/128
(96 %)
2 diff
(98.5 %id)
BQ081835 lung .b 2603 to 2947 1 to 344       344/376
(91 %)
3 diff
(99.3 %id)
AA887296 Kidney .b 2647 to 2992 347 to 1       347/347
(100 %)
1 diff
(99.8 %id)
AI339959   .b 2652 to 2992 359 to 18   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 342/342
(100 %)
1 diff
(99.8 %id)
AA887321 Kidney .b 2668 to 2992 325 to 1       325/329
(98 %)
0 diff
(100 %id)
AA923696 2 pooled tumors (clear cell type), Kidney .b 2668 to 2992 339 to 15   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 325/330
(98 %)
0 diff
(100 %id)
AA873214 2 pooled tumors (clear cell type), Kidney .b 2681 to 2995 316 to 2       315/316
(99 %)
0 diff
(100 %id)
BM841374 lymph node, stomach .b 2700 to 2972 1 to 274       274/274
(100 %)
2 diff
(99.3 %id)
BM841009 lymph node, stomach .b 2700 to 2992 1 to 293   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 293/293
(100 %)
0 diff
(100 %id)
AI868408 pooled .b 2746 to 2992 258 to 12   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 247/247
(100 %)
1 diff
(99.6 %id)
BP357230 mammary gland .c 1 to 581 1 to 581 exact tiling clone,   581/581
(100 %)
0 diff
(100 %id)
BP357263 mammary gland .c 1 to 548 1 to 548 A7V V74A V99A E103Q N121H ...     548/583
(93 %)
24 diff
(95.9 %id)
DA393801 thalamus .d 1 to 576 2 to 577 exact tiling clone, capped   576/576
(100 %)
0 diff
(100 %id)
DA953477 Spleen .d 1 to 559 2 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
DB021912 testis .e 1 to 451 2 to 452 R87X tiling clone, capped   451/451
(100 %)
0 diff
(100 %id)
AW772099 Kidney .f 1 to 627 626 to 1 L5S S6L G7V T8P I9F ... tiling clone,   626/626
(100 %)
1 diff
(99.9 %id)
DB039265 testis .g 1 to 550 2 to 551 exact tiling clone, capped   550/550
(100 %)
0 diff
(100 %id)
BG426923 Kidney Gene AGPAT9, variant not shown              
DB321005 Kidney Gene AGPAT9, variant not shown         This clone was ignored    
DA635718 Kidney Gene AGPAT9, variant not shown       capped This clone was ignored    
BP308327 brain Gene AGPAT9, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C