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Gene MDC1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
275 supporting clones for gene MDC1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DB066865 testis .a 1 to 368 2 to 370   tiling clone, capped   369/369
(100 %)
1 diff
(99.8 %id)
BP312828 mammary gland .a 101 to 683 1 to 583   tiling clone,   583/583
(100 %)
0 diff
(100 %id)
DB339785 testis .a 6734 to 7270 537 to 1   tiling clone,   537/539
(99 %)
0 diff
(100 %id)
EF177823   .b 1 to 740 1 to 740   tiling clone,   740/740
(100 %)
0 diff
(100 %id)
BQ216855 embryonal carcinoma, cell line, testis .b 35 to 818 1 to 790       790/857
(92 %)
13 diff
(98.5 %id)
NM_014641.2   .b 243 to 7609 1 to 7367 exact RefSeq, AAA   7367/7367
(100 %)
0 diff
(100 %id)
BP278206   .b 433 to 1013 1 to 581       581/583
(99 %)
3 diff
(99.5 %id)
BP218873 caudate nucleus .b 477 to 1057 1 to 581       581/581
(100 %)
2 diff
(99.7 %id)
BP348592 brain .b 480 to 1071 1 to 592       592/592
(100 %)
1 diff
(99.9 %id)
BP363334 lung .b 595 to 1176 1 to 582       582/582
(100 %)
2 diff
(99.7 %id)
BP359353 mammary gland .b 606 to 1185 1 to 582       582/582
(100 %)
3 diff
(99.5 %id)
EF177820 testis .b 615 to 1416 1 to 803       803/803
(100 %)
3 diff
(99.7 %id)
DC342464 thalamus .b 621 to 903 1 to 283       283/283
(100 %)
1 diff
(99.7 %id)
BP312028 brain .b 632 to 1214 1 to 583       583/583
(100 %)
0 diff
(100 %id)
DA715184   .b 642 to 1186 2 to 547   capped   546/546
(100 %)
1 diff
(99.9 %id)
DA941872 Spleen .b 644 to 1230 2 to 590   capped   589/589
(100 %)
4 diff
(99.4 %id)
DA496229 brain .b 645 to 1191 2 to 548   capped   547/547
(100 %)
1 diff
(99.9 %id)
DB141208 thymus .b 645 to 1186 2 to 546   capped   545/545
(100 %)
4 diff
(99.3 %id)
BP357918 mammary gland .b 647 to 1227 1 to 581       581/581
(100 %)
0 diff
(100 %id)
AL699577 human skeletal muscle .b 649 to 1269 1 to 620       620/626
(99 %)
3 diff
(99.6 %id)
BX504693   .b 649 to 1189 1 to 541       541/541
(100 %)
1 diff
(99.9 %id)
BP282705 bone marrow .b 650 to 1230 1 to 581       581/581
(100 %)
1 diff
(99.9 %id)
D79992   .b 670 to 7609 1 to 6940 I536M T1041A S1540P Q1545R tiling clone, available from KIAA,   6940/6940
(100 %)
4 diff
(100.0 %id)
BM478128 lymph, lymphoma, cell line .b 687 to 1720 1 to 1037       1037/1037
(100 %)
20 diff
(98.1 %id)
CN307567 embryonic stem cells, cell lines H1, H7, andH9 .b 747 to 1387 1 to 642       642/642
(100 %)
1 diff
(99.9 %id)
DB070874 testis .b 1534 to 2062 2 to 531   capped   530/530
(100 %)
2 diff
(99.7 %id)
BE905563 epithelioid carcinoma, Pancreas .b 1538 to 2070 1 to 534       534/534
(100 %)
1 diff
(99.9 %id)
CN307571 embryonic stem cells, cell lines H1, H7, andH9 .b 1546 to 1966 1 to 420       420/420
(100 %)
2 diff
(99.6 %id)
BP281447 bone marrow .b 1632 to 2234 1 to 603       603/603
(100 %)
3 diff
(99.6 %id)
AW945703 lung_normal .b 1869 to 2270 14 to 419       406/423
(95 %)
10 diff
(97.7 %id)
AW503937 lymph .b 1930 to 2360 8 to 438       431/438
(98 %)
6 diff
(98.7 %id)
TI_154159947   .b 1930 to 2597 90 to 757       668/668
(100 %)
24 diff
(96.5 %id)
DA504021 brain .b 2135 to 2682 2 to 549   tiling clone, capped   548/548
(100 %)
0 diff
(100 %id)
CN307568 embryonic stem cells, cell lines H1, H7, andH9 .b 2187 to 2846 1 to 660       660/660
(100 %)
3 diff
(99.6 %id)
BM193985 leukopheresis .b 2210 to 2737 1 to 528       528/528
(100 %)
9 diff
(98.3 %id)
BP870768 embryonal kidney .b 2418 to 2729 1 to 312       312/332
(93 %)
3 diff
(99.1 %id)
BI053834 placenta_normal .b 2608 to 2974 385 to 19       367/385
(95 %)
1 diff
(99.8 %id)
BI055029 placenta_normal .b 2608 to 2958 1 to 353       353/353
(100 %)
6 diff
(98.4 %id)
BQ425648 eye, retinoblastoma .b 2756 to 3580 1 to 828       828/882
(93 %)
16 diff
(98.2 %id)
DA768095 brain .b 2783 to 3360 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
DA327005 hippocampus .b 2824 to 3469 2 to 647   capped   646/646
(100 %)
0 diff
(100 %id)
BG960636 colon .b 3072 to 3205 175 to 42       134/175
(76 %)
0 diff
(100 %id)
BE694194 breast .b 3118 to 3363 249 to 3       247/262
(94 %)
0 diff
(100 %id)
DA317357 hippocampus .b 3131 to 3699 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
CR975422 T-Lymphocytes .b 3137 to 3350 1 to 214       214/214
(100 %)
0 diff
(100 %id)
BE177118 head_neck .b 3145 to 3547 409 to 7     Submitted on the opposite strand 403/409
(98 %)
0 diff
(100 %id)
BE177140 head_neck .b 3145 to 3538 395 to 1     Submitted on the opposite strand 395/395
(100 %)
4 diff
(99.0 %id)
BE177176 head_neck .b 3145 to 3539 403 to 1     Submitted on the opposite strand 403/403
(100 %)
18 diff
(95.6 %id)
DB293620   .b 3273 to 3984 2 to 720   capped   719/724
(99 %)
15 diff
(98.0 %id)
DB293736   .b 3273 to 3963 2 to 696   capped   695/703
(98 %)
11 diff
(98.5 %id)
CN307574 embryonic stem cells, DMSO-treated H9 cellline .b 3303 to 3660 1 to 358       358/358
(100 %)
0 diff
(100 %id)
CN307573 embryonic stem cells, cell lines H1, H7, andH9 .b 3487 to 3938 1 to 452       452/452
(100 %)
0 diff
(100 %id)
CX756780 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .b 3646 to 4199 1 to 554   tiling clone,   554/554
(100 %)
0 diff
(100 %id)
DB067599 testis .b 3737 to 4210 2 to 475   capped   474/474
(100 %)
1 diff
(99.8 %id)
DB279847 uterus .b 3765 to 4127 2 to 364   capped   363/363
(100 %)
1 diff
(99.8 %id)
BF331944 breast .b 3879 to 4037 156 to 1       156/156
(100 %)
3 diff
(98.1 %id)
DB091903 testis .b 3901 to 4453 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
AA487852 lung .b 3950 to 4378 1 to 429       429/429
(100 %)
11 diff
(97.5 %id)
BP353362   .b 4003 to 4605 1 to 603       603/603
(100 %)
10 diff
(98.4 %id)
BM720092 eye, fetal eye .b 4072 to 4667 1 to 597       597/597
(100 %)
74 diff
(87.7 %id)
BF919122 nervous_tumor .b 4097 to 4292 204 to 9     Submitted on the opposite strand 196/207
(94 %)
0 diff
(100 %id)
CN307569 embryonic stem cells, cell lines H1, H7, andH9 .b 4131 to 4896 13 to 777       765/777
(98 %)
6 diff
(99.3 %id)
DA803139 brain .b 4381 to 4931 2 to 552   capped   551/551
(100 %)
76 diff
(86.3 %id)
DA803147 brain .b 4381 to 4935 2 to 556   capped   555/557
(99 %)
76 diff
(86.4 %id)
DA803153 brain .b 4381 to 4941 2 to 562   capped   561/561
(100 %)
77 diff
(86.3 %id)
DA803158 brain .b 4381 to 4928 2 to 549   capped   548/548
(100 %)
76 diff
(86.2 %id)
DA803161 brain .b 4381 to 4934 2 to 555   capped   554/554
(100 %)
75 diff
(86.5 %id)
DA951684 Spleen .b 4382 to 4931 2 to 551   capped   550/550
(100 %)
76 diff
(86.2 %id)
BU430719 lymph .b 4447 to 4826 1 to 380       380/380
(100 %)
4 diff
(99.0 %id)
TI_59394355   .b 4481 to 5090 85 to 695       611/611
(100 %)
7 diff
(98.9 %id)
BM015981 breast, mammary adenocarcinoma, cell line .b 4482 to 5090 1 to 610       610/610
(100 %)
7 diff
(98.9 %id)
BF834701 head_neck .b 4490 to 4680 1 to 194       194/206
(94 %)
8 diff
(96.2 %id)
BF848838 lung_normal .b 4492 to 4667 16 to 190       175/190
(92 %)
6 diff
(96.9 %id)
CV339667 breast .b 4495 to 4688 195 to 1     Submitted on the opposite strand 195/195
(100 %)
5 diff
(97.5 %id)
BF802516 colon_ins .b 4610 to 4912 436 to 134     Submitted on the opposite strand 303/436
(69 %)
0 diff
(100 %id)
BE082779 breast .b 4642 to 4785 148 to 5     Submitted on the opposite strand 144/148
(97 %)
0 diff
(100 %id)
BQ338292 nervous_normal .b 4667 to 4916 269 to 17       253/277
(91 %)
0 diff
(100 %id)
CN307565 embryonic stem cells, DMSO-treated H9 cellline .b 4667 to 5270 1 to 605       605/605
(100 %)
3 diff
(99.6 %id)
CX782785 human embryonic stem cells .b 4773 to 5599 1 to 827       827/827
(100 %)
2 diff
(99.8 %id)
CX760316 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .b 4779 to 5547 1 to 756     Submitted on the opposite strand 756/771
(98 %)
13 diff
(98.4 %id)
BM005726 hepatocellular carcinoma, cell line, Liver .b 4858 to 5523 1 to 656       656/656
(100 %)
24 diff
(96.4 %id)
TI_59385667   .b 4859 to 5523 115 to 769       655/655
(100 %)
24 diff
(96.4 %id)
BG978966 colon_normal .b 4864 to 5058 1 to 191       191/191
(100 %)
9 diff
(95.3 %id)
CN307572 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 4885 to 5544 1 to 660       660/660
(100 %)
78 diff
(88.2 %id)
BF817366 colon_ins .b 4907 to 5104 9 to 205       197/205
(96 %)
6 diff
(97.1 %id)
BE762841 nervous_tumor .b 4976 to 5174 1 to 197       197/197
(100 %)
2 diff
(99.0 %id)
BI023383 marrow .b 5013 to 5202 191 to 1       191/191
(100 %)
2 diff
(99.0 %id)
CV331197 lung_tumor .b 5047 to 5454 17 to 424       408/424
(96 %)
6 diff
(98.6 %id)
CD655491 Embryonic Stem cells .b 5068 to 5822 12 to 761       750/795
(94 %)
13 diff
(98.4 %id)
BM799449 eye, retinoblastoma .b 5074 to 6126 1 to 1064   tiling clone,   1064/1069
(99 %)
45 diff
(95.8 %id)
DA351445 substantia nigra .b 5079 to 5663 2 to 586   capped   585/585
(100 %)
0 diff
(100 %id)
BM728621 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 5096 to 5793 1 to 699       699/699
(100 %)
39 diff
(94.5 %id)
BE082544 breast .b 5151 to 5636 1 to 486       486/486
(100 %)
11 diff
(97.8 %id)
BF984680 duodenal adenocarcinoma, cell line, small intestine .b 5182 to 5924 1 to 743       743/1090
(68 %)
23 diff
(97.9 %id)
DA069765 cerebellum .b 5201 to 5759 2 to 560   capped   559/559
(100 %)
2 diff
(99.7 %id)
BI023382 marrow .b 5218 to 5408 201 to 13       189/201
(94 %)
0 diff
(100 %id)
CX870473 embryonic stem .b 5224 to 6042 1 to 818       818/818
(100 %)
3 diff
(99.7 %id)
BU621036 cell lines, Chondrosarcoma .b 5303 to 5762 557 to 98   AAA   460/466
(98 %)
0 diff
(100 %id)
BM469176 lymph, lymphoma, cell line .b 5319 to 5817 167 to 677       511/1301
(39 %)
21 diff
(98.4 %id)
DA909007   .b 5323 to 5878 2 to 557   capped   556/556
(100 %)
1 diff
(99.9 %id)
EB387737 eye, optic nerve .b 5340 to 6097 1 to 758       758/758
(100 %)
1 diff
(99.9 %id)
AA380513   .b 5361 to 5672 1 to 313       313/313
(100 %)
1 diff
(99.7 %id)
AW956438   .b 5362 to 5801 1 to 440       440/440
(100 %)
15 diff
(96.6 %id)
DA834943 placenta .b 5410 to 5968 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
AU132347   .b 5430 to 6221 2 to 790   capped   789/791
(99 %)
10 diff
(98.8 %id)
DA997430   .b 5458 to 6023 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA614667   .b 5464 to 6055 2 to 594   capped   593/593
(100 %)
1 diff
(99.9 %id)
BF840551 head_neck .b 5517 to 5752 1 to 236       236/236
(100 %)
1 diff
(99.6 %id)
BP345242 synovial membrane .b 5557 to 6138 1 to 583       583/583
(100 %)
1 diff
(99.9 %id)
BF987111 placenta_normal .b 5577 to 5684 20 to 127       108/132
(81 %)
2 diff
(98.5 %id)
TI_154187830   .b 5651 to 6363 120 to 832       713/954
(74 %)
9 diff
(99.1 %id)
TI_154188669   .b 5651 to 6360 120 to 818       699/880
(79 %)
18 diff
(98.0 %id)
TI_154188693   .b 5651 to 6544 122 to 1012       891/976
(91 %)
51 diff
(94.8 %id)
AA412368   .b 5677 to 6099 8 to 430       423/430
(98 %)
6 diff
(98.7 %id)
BG007560 placenta_normal .b 5700 to 5840 1 to 142       142/142
(100 %)
7 diff
(95.1 %id)
BQ301344 bocio_tumor .b 5730 to 5852 152 to 30       123/152
(80 %)
0 diff
(100 %id)
CR993953 T-Lymphocytes .b 5732 to 6534 1 to 804       804/805
(99 %)
2 diff
(99.8 %id)
AA209172   .b 5761 to 5812 1 to 52       52/52
(100 %)
0 diff
(100 %id)
BM451298 eye, retinoblastoma .b 5770 to 6655 25 to 923       897/1056
(84 %)
25 diff
(97.7 %id)
DA037750   .b 5812 to 6333 2 to 523   capped   522/522
(100 %)
2 diff
(99.7 %id)
AW580204 head_neck .b 5813 to 6336 547 to 25       523/547
(95 %)
0 diff
(100 %id)
BG179759 adenocarcinoma, cell line, Prostate .b 5834 to 6618 11 to 781       771/962
(80 %)
26 diff
(97.3 %id)
BG179914 adenocarcinoma, cell line, Prostate .b 5835 to 6534 10 to 707       698/806
(86 %)
15 diff
(98.2 %id)
CV800450 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .b 5860 to 6547 1 to 683       683/844
(80 %)
6 diff
(99.3 %id)
BG109368 Bone, osteosarcoma, cell line .b 5872 to 6649 1 to 776       776/925
(83 %)
8 diff
(99.2 %id)
BG109254 Bone, osteosarcoma, cell line .b 5899 to 6733 1 to 839       836/893
(93 %)
27 diff
(97.0 %id)
DB442566 testis .b 5914 to 6358 205 to 649       445/649
(68 %)
9 diff
(98.7 %id)
H12902 whole brain .b 5921 to 6366 1 to 450       450/475
(94 %)
9 diff
(98.2 %id)
BU742296 eye, fetal eye .b 5960 to 6297 587 to 250   AAA   338/569
(59 %)
0 diff
(100 %id)
BG392243 embryonal carcinoma, cell line, testis .b 6033 to 6784 1 to 746       746/996
(74 %)
16 diff
(98.4 %id)
BF796522 lymph, lymphoma, cell line .b 6040 to 6710 1 to 670       670/670
(100 %)
3 diff
(99.6 %id)
BE896560 melanotic melanoma, skin .b 6048 to 6784 1 to 736       736/750
(98 %)
10 diff
(98.7 %id)
CN307566 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 6052 to 6664 1 to 613       613/613
(100 %)
2 diff
(99.7 %id)
CF134578 CNCAP(3)T-225 cell line, Prostate .b 6164 to 6690 1 to 527       527/527
(100 %)
3 diff
(99.5 %id)
TI_154162657   .b 6170 to 7097 78 to 991       914/1149
(79 %)
52 diff
(95.5 %id)
AA318062 retina .b 6223 to 6523 1 to 301       301/301
(100 %)
0 diff
(100 %id)
AW949381   .b 6224 to 6740 1 to 517       517/517
(100 %)
0 diff
(100 %id)
AA113104   .b 6233 to 6633 5 to 408       404/409
(98 %)
9 diff
(97.8 %id)
BX118152 parathyroid gland, parathyroid tumor .b 6250 to 6990 1 to 744       744/753
(98 %)
4 diff
(99.5 %id)
W19762 parathyroid gland, parathyroid tumor .b 6250 to 6634 1 to 396       396/405
(97 %)
15 diff
(96.3 %id)
TI_227712770   .b 6254 to 7118 939 to 79   AAA   861/1014
(84 %)
25 diff
(97.6 %id)
T94942 lung .b 6294 to 6536 1 to 248       248/306
(81 %)
10 diff
(96.8 %id)
BG121972 adenocarcinoma, cell line, Liver .b 6340 to 7023 1 to 693       693/821
(84 %)
17 diff
(98.0 %id)
BE782222 eye, retinoblastoma .b 6374 to 7127 1 to 753       753/1103
(68 %)
20 diff
(98.2 %id)
BI028591 marrow .b 6378 to 6742 1 to 365       365/369
(98 %)
4 diff
(99.0 %id)
BG494538 lung, mucoepidermoid carcinoma .b 6393 to 7131 1 to 758       758/782
(96 %)
28 diff
(96.5 %id)
AV693131 hepatocellular carcinoma .b 6414 to 6832 1 to 417       420/419
(100 %)
4 diff
(99.1 %id)
BM672016 eye, fetal eye .b 6422 to 7107 704 to 19   AAA   686/686
(100 %)
2 diff
(99.8 %id)
AV656790 corresponding non cancerous liver tissue .b 6431 to 6816 1 to 386     Submitted on the opposite strand 386/386
(100 %)
0 diff
(100 %id)
CX782708 human embryonic stem cells .b 6436 to 7120 714 to 30   AAA   685/685
(100 %)
4 diff
(99.5 %id)
BX351183 Neuroblastoma Cot 25-normalized .b 6441 to 7117 673 to 1       673/673
(100 %)
9 diff
(98.7 %id)
BX395031 Neuroblastoma Cot 25-normalized .b 6441 to 7074 655 to 20       636/655
(97 %)
17 diff
(97.5 %id)
CD742813 Alveolar Macrophage, lung .b 6516 to 7118 622 to 19   AAA   604/604
(100 %)
3 diff
(99.6 %id)
BM712622 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 6518 to 6815 1 to 298   fully sequenced,   298/298
(100 %)
0 diff
(100 %id)
CX756530 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .b 6560 to 7107 572 to 29   AAA   544/697
(78 %)
14 diff
(98.0 %id)
AW138141   .b 6572 to 7118 564 to 18   AAA   547/552
(99 %)
0 diff
(100 %id)
W56879 parathyroid gland, parathyroid tumor .b 6584 to 7076 1 to 492       492/492
(100 %)
5 diff
(99.0 %id)
AA700313 liver and spleen .b 6590 to 7118 529 to 1       529/529
(100 %)
3 diff
(99.5 %id)
DB383677   .b 6594 to 7118 521 to 1       521/522
(99 %)
19 diff
(96.4 %id)
R93282 liver and spleen .b 6597 to 6953 1 to 358       358/359
(99 %)
7 diff
(98.1 %id)
TI_154011284   .b 6610 to 7107 608 to 106   AAA   503/1256
(40 %)
14 diff
(98.9 %id)
AI281101 adenocarcinoma, colon .b 6611 to 7107 514 to 19   AAA   496/497
(99 %)
13 diff
(97.4 %id)
CB139839 Liver .b 6613 to 7073 1 to 461       461/461
(100 %)
0 diff
(100 %id)
AA778940 liver and spleen .b 6626 to 7106 478 to 1       478/478
(100 %)
5 diff
(99.0 %id)
H68789 liver and spleen .b 6627 to 6945 1 to 324   fully sequenced,   324/324
(100 %)
2 diff
(99.4 %id)
R53687 whole brain .b 6628 to 7054 1 to 438       438/478
(91 %)
20 diff
(95.9 %id)
CB052199 leiomyosarcoma, soft tissue .b 6634 to 7182 7 to 555       549/555
(98 %)
6 diff
(99.0 %id)
AI081989 breast .b 6635 to 7115 486 to 6       481/486
(98 %)
2 diff
(99.6 %id)
BF768579 epid_tumor .b 6636 to 6833 12 to 208       197/219
(89 %)
8 diff
(96.4 %id)
AA778933 liver and spleen .b 6659 to 7107 449 to 1       449/449
(100 %)
2 diff
(99.6 %id)
DB383560   .b 6665 to 7118 457 to 1       457/535
(85 %)
9 diff
(98.4 %id)
AA565527 germ cell tumor .b 6672 to 7119 447 to 1       447/454
(98 %)
3 diff
(99.4 %id)
AI992091 pooled germ cell tumors .b 6672 to 7113 455 to 15   AAA   441/445
(99 %)
3 diff
(99.4 %id)
BF171584 blood .b 6675 to 6976 1 to 296       296/298
(99 %)
10 diff
(96.7 %id)
BF326101 amnion_normal .b 6679 to 7008 342 to 13       330/342
(96 %)
2 diff
(99.5 %id)
AI308788 adenocarcinoma, colon .b 6690 to 7107 435 to 19   AAA   417/418
(99 %)
12 diff
(97.2 %id)
BU153180 embryonal carcinoma, cell line, testis .b 6711 to 7579 1 to 870       870/873
(99 %)
11 diff
(98.8 %id)
BE671476 carcinoid, lung .b 6712 to 7086 1 to 375     Submitted on the opposite strand 375/375
(100 %)
1 diff
(99.8 %id)
AI673553 colon, colonic mucosa from 3 patients with Crohn'sdisease .b 6715 to 7108 400 to 5       396/544
(72 %)
10 diff
(98.2 %id)
CA435878 lung, Metastatic Chondrosarcoma .b 6728 to 7107 398 to 19   AAA   380/380
(100 %)
1 diff
(99.8 %id)
BE219401 carcinoid, lung .b 6738 to 7086 1 to 349     Submitted on the opposite strand 349/349
(100 %)
0 diff
(100 %id)
AA025080 heart .b 6748 to 7162 1 to 425       425/425
(100 %)
11 diff
(97.5 %id)
BF432839 carcinoid, lung .b 6749 to 7085 1 to 337     Submitted on the opposite strand 337/337
(100 %)
1 diff
(99.8 %id)
BU738344 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 6754 to 7107 372 to 19   fully sequenced, AAA   354/354
(100 %)
0 diff
(100 %id)
EC528659 Prostate .b 6781 to 6877 97 to 1       97/97
(100 %)
0 diff
(100 %id)
H63014 liver and spleen .b 6783 to 7144 1 to 360       360/362
(99 %)
4 diff
(98.9 %id)
H68947 liver and spleen .b 6783 to 7238 14 to 472       459/481
(95 %)
9 diff
(98.2 %id)
AA004545 liver and spleen .b 6783 to 7130 1 to 349       349/353
(98 %)
7 diff
(98.1 %id)
AA626547 lung, lung carcinoma .b 6813 to 7125 1 to 313       313/313
(100 %)
0 diff
(100 %id)
BI713111 Pancreas, Purified pancreatic islet .b 6882 to 7504 1 to 623       623/623
(100 %)
1 diff
(99.9 %id)
CN307570 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .b 6910 to 7532 1 to 623       623/623
(100 %)
0 diff
(100 %id)
H68790 liver and spleen .b 6915 to 7102 192 to 1   fully sequenced,   192/192
(100 %)
1 diff
(99.5 %id)
BQ446250 Knee, Osteoarthritic Cartilage .b 6934 to 7604 689 to 19   AAA   671/671
(100 %)
1 diff
(99.9 %id)
CK820706 Pancreas, Purified pancreatic islet .b 6949 to 7429 1 to 481     Submitted on the opposite strand 481/481
(100 %)
0 diff
(100 %id)
BU621433 cell lines, Chondrosarcoma .b 6966 to 7609 665 to 19   AAA   647/647
(100 %)
3 diff
(99.6 %id)
DB507422 testis .b 6970 to 7608 1 to 639     Submitted on the opposite strand 639/639
(100 %)
0 diff
(100 %id)
BF347070 anaplastic oligodendroglioma with 1p/19qloss, brain .b 7051 to 7606 1 to 551   AAA   551/551
(100 %)
7 diff
(98.8 %id)
BP394845 pancreatic islet .b 7052 to 7552 500 to 1       500/500
(100 %)
1 diff
(99.8 %id)
AW361872 colon .b 7056 to 7598 543 to 1       543/543
(100 %)
6 diff
(98.9 %id)
AW370574 breast .b 7056 to 7587 534 to 5       530/534
(99 %)
0 diff
(100 %id)
AI421073 brain, glioblastoma (pooled) .b 7061 to 7609 549 to 1       549/549
(100 %)
0 diff
(100 %id)
DB369346   .b 7073 to 7606 523 to 1       523/530
(98 %)
27 diff
(95.0 %id)
BG575268 breast, mammary adenocarcinoma, cell line .b 7094 to 7609 1 to 518   AAA   518/518
(100 %)
2 diff
(99.7 %id)
AW499529 lymph .b 7099 to 7609 1 to 511       511/511
(100 %)
6 diff
(98.9 %id)
BG896622 cartilage .b 7105 to 7456 86 to 437       352/369
(95 %)
6 diff
(98.4 %id)
TI_158439159   .b 7105 to 7613 84 to 592       509/617
(82 %)
3 diff
(99.6 %id)
BP397835 pancreatic islet .b 7110 to 7609 1 to 501     Submitted on the opposite strand 501/501
(100 %)
1 diff
(99.9 %id)
AW070349 pooled .b 7116 to 7606 495 to 4       492/495
(99 %)
0 diff
(100 %id)
BP398379 pancreatic islet .b 7120 to 7606 1 to 487     Submitted on the opposite strand 487/487
(100 %)
0 diff
(100 %id)
AA834198 Kidney, kidney tumor .b 7127 to 7577 451 to 1       451/455
(99 %)
1 diff
(99.8 %id)
AW471032 carcinoid, lung .b 7130 to 7605 475 to 3       473/516
(91 %)
0 diff
(100 %id)
AI968136 pooled germ cell tumors .b 7141 to 7606 490 to 27   AAA   464/464
(100 %)
5 diff
(99.0 %id)
AI695892 pooled germ cell tumors .b 7159 to 7606 451 to 4       448/451
(99 %)
0 diff
(100 %id)
AI184613   .b 7163 to 7605 449 to 7       443/449
(98 %)
0 diff
(100 %id)
AA112292   .b 7169 to 7606 441 to 4       438/441
(99 %)
0 diff
(100 %id)
CB052198 leiomyosarcoma, soft tissue .b 7183 to 7605 466 to 44   AAA   423/423
(100 %)
7 diff
(98.4 %id)
AA777574 liver and spleen .b 7195 to 7605 408 to 1       408/408
(100 %)
3 diff
(99.3 %id)
T94996 lung .b 7196 to 7593 399 to 1       399/399
(100 %)
1 diff
(99.8 %id)
AA903237 leiomyosarcoma, soft tissue .b 7198 to 7605 436 to 29   AAA   408/408
(100 %)
1 diff
(99.8 %id)
AW207048   .b 7199 to 7605 424 to 18   AAA   407/416
(97 %)
0 diff
(100 %id)
AI341962 pooled germ cell tumors .b 7212 to 7610 405 to 7   tiling clone,   399/405
(98 %)
0 diff
(100 %id)
BF446959 fibrotheoma, ovary .b 7212 to 7610 405 to 7       399/405
(98 %)
0 diff
(100 %id)
AA555190 breast .b 7214 to 7605 405 to 14   AAA   392/392
(100 %)
0 diff
(100 %id)
AI655456 pooled germ cell tumors .b 7214 to 7607 423 to 30   AAA   394/394
(100 %)
4 diff
(99.0 %id)
AA617924 lung, lung tumor .b 7215 to 7559 345 to 1       345/345
(100 %)
1 diff
(99.8 %id)
AA625703   .b 7218 to 7605 391 to 4       388/391
(99 %)
0 diff
(100 %id)
AI685704 Prostate .b 7233 to 7605 375 to 3       373/375
(99 %)
0 diff
(100 %id)
AI359939 anaplastic oligodendroglioma, brain .b 7271 to 7606 336 to 1       336/336
(100 %)
1 diff
(99.8 %id)
BG222927 brain, glioblastoma without EGFR amplification .b 7284 to 7605 323 to 2       322/323
(99 %)
0 diff
(100 %id)
AA861988 squamous cell carcinoma from base of tongue, tongue .b 7290 to 7610 322 to 2       321/322
(99 %)
0 diff
(100 %id)
BG222863 brain, glioblastoma without EGFR amplification .b 7300 to 7605 307 to 2       306/307
(99 %)
0 diff
(100 %id)
AI085441 liver and spleen .b 7308 to 7605 298 to 1       298/298
(100 %)
2 diff
(99.4 %id)
AA024983 heart .b 7348 to 7609 262 to 1       262/265
(98 %)
1 diff
(99.7 %id)
BM714016 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 7367 to 7609 10 to 252   AAA   243/252
(96 %)
6 diff
(97.7 %id)
N91350 parathyroid gland, parathyroid tumor .b 7375 to 7609 235 to 1       235/235
(100 %)
0 diff
(100 %id)
BM126665 Islets of Langerhans, Pancreas .b 7383 to 7605 1 to 223   AAA Submitted on the opposite strand 223/223
(100 %)
0 diff
(100 %id)
AI351289 lung .b 7386 to 7608 223 to 1       223/223
(100 %)
2 diff
(99.2 %id)
N63985 multiple sclerosis lesions .b 7432 to 7607 190 to 13   AAA   178/179
(99 %)
2 diff
(98.9 %id)
DW450319 Liver .b 7433 to 7607 17 to 191       175/198
(88 %)
1 diff
(99.5 %id)
AI312910 lung .b 7435 to 7608 174 to 1       174/174
(100 %)
0 diff
(100 %id)
AW089137 brain, tumor, 5 pooled (see description) .b 7438 to 7605 169 to 2       168/169
(99 %)
0 diff
(100 %id)
BC152556 Clones donated by Kazusa DNA Research Inst. .c 1 to 6075 5 to 6079 I536M T1041A E1126K P1127L H1128E ... tiling clone, AAA   6079/6079
(100 %)
16 diff
(99.8 %id)
AK302434 testis .d 1 to 5645 4 to 5648 R858Q R865Q P869S K870E S873Y ... tiling clone,   5648/5648
(100 %)
28 diff
(99.6 %id)
DC400253 testis .d 1 to 534 4 to 538       538/538
(100 %)
1 diff
(99.9 %id)
DC402595 testis .d 6 to 416 1 to 411       411/411
(100 %)
7 diff
(98.3 %id)
DB096859 testis .d 1648 to 2189 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
AA424874 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .d 2699 to 2974 364 to 89       276/364
(75 %)
0 diff
(100 %id)
BP279371   .e 1 to 583 1 to 583   tiling clone,   583/583
(100 %)
1 diff
(99.9 %id)
BU149223 sympathetic trunk .e 7 to 916 1 to 909   tiling clone,   909/910
(99 %)
16 diff
(98.3 %id)
AL041662 testis .e 24 to 505 1 to 482       482/482
(100 %)
0 diff
(100 %id)
AL041663 testis .e 3468 to 4071 603 to 1   tiling clone,   603/603
(100 %)
3 diff
(99.6 %id)
BC110645 Pancreas, epithelioid carcinoma .f 1 to 3024 1 to 3024 exact tiling clone, AAA   3024/3024
(100 %)
0 diff
(100 %id)
DB083030 testis .g 1 to 551 4 to 554   tiling clone, capped   553/553
(100 %)
0 diff
(100 %id)
EF177821 testis .g 27 to 902 1 to 876 exact tiling clone,   876/876
(100 %)
0 diff
(100 %id)
DB085217 testis .g 41 to 598 2 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
BP201348 amygdala .g 74 to 655 1 to 582       582/582
(100 %)
0 diff
(100 %id)
CA488497   .h 1 to 847 1 to 851   tiling clone,   851/886
(96 %)
5 diff
(99.5 %id)
CA488874   .h 514 to 1402 1 to 900 A214G tiling clone,   900/901
(99 %)
15 diff
(98.4 %id)
EF177822 testis .i 1 to 833 1 to 833 exact tiling clone,   833/833
(100 %)
2 diff
(99.8 %id)
BQ889904 sympathetic trunk .j 1 to 792 1 to 798 E157* tiling clone,   798/845
(94 %)
8 diff
(99.1 %id)
BP248058 Kidney .k 1 to 583 1 to 583 exact tiling clone,   583/583
(100 %)
0 diff
(100 %id)
BP231498 muscle .k 8 to 579 1 to 572       572/582
(98 %)
1 diff
(99.9 %id)
BI053907 placenta_normal .l 1 to 420 422 to 3 exact tiling clone,   420/422
(99 %)
1 diff
(99.8 %id)
AL704554 human skeletal muscle .m-u 1 to 541 1 to 541 exact tiling clone,   541/541
(100 %)
0 diff
(100 %id)
BF737186 bladder_tumor .m-u 362 to 731 1 to 367       367/367
(100 %)
13 diff
(96.5 %id)
BF738697 bladder_tumor .m-u 385 to 731 1 to 347   tiling clone,   347/347
(100 %)
2 diff
(99.5 %id)
BP349020 brain .n 1 to 582 1 to 582 exact tiling clone,   582/582
(100 %)
0 diff
(100 %id)
DW451779 Liver .o-u 1 to 368 8 to 374 A2P E3G tiling clone,   367/374
(98 %)
9 diff
(97.6 %id)
DW421277 Liver .o-u 330 to 611 17 to 298       282/298
(94 %)
6 diff
(98.0 %id)
DW462953 Liver .o-u 330 to 678 17 to 365   tiling clone,   349/365
(95 %)
8 diff
(97.9 %id)
DW416212 Liver .o-u 468 to 747 1 to 280   tiling clone, AAA   280/280
(100 %)
6 diff
(97.9 %id)
DA936870 Spleen .p-u 1 to 600 2 to 600 exact tiling clone, capped   599/599
(100 %)
2 diff
(99.7 %id)
DW416984 Liver .q 1 to 295 13 to 307 R27T K34P G37A tiling clone,   295/307
(96 %)
12 diff
(96.1 %id)
DW417307 Liver .q 1 to 289 13 to 302   tiling clone,   290/306
(94 %)
15 diff
(95.1 %id)
DW438173 Liver .q 1 to 234 13 to 246       234/246
(95 %)
6 diff
(97.6 %id)
DW439567 Liver .q 1 to 229 13 to 241       229/241
(95 %)
8 diff
(96.7 %id)
DW450945 Liver .q 12 to 191 15 to 195       181/195
(92 %)
8 diff
(95.9 %id)
AK298749   Gene MDC1, variant not shown         Suspected internal deletion, this clone was ignored    
CR749828 testis Gene MDC1, variant not shown       available from DKFZ, AAA Suspected internal deletion, this clone was ignored    
AL046155 testis Gene MDC1, variant not shown         Suspected internal deletion, this clone was ignored    
D78963 placenta Gene MDC1, variant not shown         Suspected internal deletion, this clone was ignored    
AV694750 hepatocellular carcinoma Gene MDC1, variant not shown         Suspected internal deletion, suspected internal deletion, this clone was ignored    
AV694539 hepatocellular carcinoma Gene MDC1, variant not shown         Suspected internal deletion, this clone was ignored    
BI252329 hepatocellular carcinoma, cell line, Liver Gene MDC1, variant not shown         This clone was ignored    
BI253000 hepatocellular carcinoma, cell line, Liver Gene MDC1, variant not shown         This clone was ignored    
BQ229544 embryonal carcinoma, cell line, testis Gene MDC1, variant not shown         Suspected internal deletion, this clone was ignored    
BC131491 PCR rescued clones Gene MDC1, variant not shown         Suspected internal deletion, this clone was ignored    
DC365247   Gene MDC1, variant not shown         Suspected internal deletion, this clone was ignored    
DA826917 pericardium Gene MDC1, variant not shown       capped Suspected internal deletion, suspected internal deletion, this clone was ignored    
DB257579 uterus Gene MDC1, variant not shown       capped This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m-u, .n, .o-u, .p-u, .q Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI