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Gene MCTP2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
123 supporting clones for gene MCTP2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA461624 tongue, tumor tissue .a 1 to 577 2 to 578   tiling clone, capped   577/577
(100 %)
0 diff
(100 %id)
DB225243 trachea .a 1 to 571 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DB228060 trachea .a 35 to 611 2 to 578   capped   577/577
(100 %)
1 diff
(99.9 %id)
DR005711 Prostate .a 36 to 621 1 to 585       585/585
(100 %)
7 diff
(98.9 %id)
NM_018349.3   .a 237 to 7855 1 to 7619 exact RefSeq, AAA Possibly primed on the genome, locally A rich (21/24 A in genome downstream of last aligned base) 7619/7619
(100 %)
0 diff
(100 %id)
AY656717   .a 302 to 2938 1 to 2637 Q403H S501P tiling clone,   2637/2637
(100 %)
5 diff
(99.9 %id)
NM_001159643.1   .b 1 to 7454 1 to 7454 exact RefSeq, AAA Possibly primed on the genome, locally A rich (21/24 A in genome downstream of last aligned base) 7454/7454
(100 %)
0 diff
(100 %id)
BC131527 PCR rescued clones .b 66 to 2537 1 to 2472   tiling clone,   2472/2472
(100 %)
1 diff
(100.0 %id)
DN831429 pooled .b 251 to 649 1 to 399       399/399
(100 %)
0 diff
(100 %id)
CB131405 Liver .b 576 to 864 1 to 289       289/289
(100 %)
0 diff
(100 %id)
CD108464 brain, Pituitary .b 2461 to 3339 13 to 892   tiling clone,   880/892
(98 %)
7 diff
(99.3 %id)
BI059005 placenta_normal .b 2766 to 2986 45 to 265       221/268
(82 %)
12 diff
(95.6 %id)
CA430843 cell lines, Chondrosarcoma .b 2846 to 3564 737 to 19   AAA Possibly primed on the genome, locally A rich (21/24 A in genome downstream of last aligned base) 719/719
(100 %)
2 diff
(99.8 %id)
AI742835 pooled .b 3000 to 3563 564 to 1   tiling clone,   564/564
(100 %)
0 diff
(100 %id)
T96765 liver and spleen .b 3028 to 3371 1 to 349       349/388
(89 %)
20 diff
(94.9 %id)
BE677929 pooled .b 3084 to 3563 480 to 1       480/480
(100 %)
2 diff
(99.6 %id)
BF590094 pooled .b 3209 to 3564 358 to 1       358/358
(100 %)
6 diff
(98.4 %id)
AL697863 human skeletal muscle .b 3266 to 4059 1 to 792   tiling clone,   792/792
(100 %)
11 diff
(98.7 %id)
BX094695 colon, moderately-differentiated adenocarcinoma .b 3354 to 3793 454 to 15   AAA Possibly primed on the genome, locally A rich (21/24 A in genome downstream of last aligned base) 440/440
(100 %)
0 diff
(100 %id)
AI469703 colon, moderately-differentiated adenocarcinoma .b 3370 to 3793 424 to 1       424/424
(100 %)
3 diff
(99.3 %id)
CA413499 Chondrosarcoma Grade II, Left Pelvis .b 3415 to 3909 514 to 19   AAA Possibly primed on the genome, locally A rich (21/24 A in genome downstream of last aligned base) 496/496
(100 %)
7 diff
(98.6 %id)
BX479014   .b 3446 to 3989 1 to 544       544/544
(100 %)
8 diff
(98.6 %id)
AI215412 pooled .b 3476 to 3798 327 to 4       324/327
(99 %)
0 diff
(100 %id)
BP292512 lung .b 3533 to 4078 5 to 550       546/550
(99 %)
6 diff
(99.0 %id)
AI538038 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .b 3592 to 3907 319 to 4       316/319
(99 %)
0 diff
(100 %id)
AU186107 skin .b 3622 to 3790 169 to 1       169/169
(100 %)
0 diff
(100 %id)
AI678748 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .b 3694 to 3907 214 to 2       213/214
(99 %)
0 diff
(100 %id)
CD640029 pooled .b 3873 to 4536 1 to 662   tiling clone,   662/723
(91 %)
7 diff
(99.1 %id)
DA450908 tongue, tumor tissue .b 4094 to 4664 2 to 572   tiling clone, capped   571/571
(100 %)
1 diff
(99.9 %id)
AK026984   .b 4314 to 7454 1 to 3141   tiling clone, available from FLJ, AAA Possibly primed on the genome, locally A rich (21/24 A in genome downstream of last aligned base) 3141/3141
(100 %)
4 diff
(99.9 %id)
AA477894 ovarian tumor, ovary .b 4410 to 4910 1 to 501       501/501
(100 %)
5 diff
(99.1 %id)
AW750535 colon_normal .b 4411 to 4588 185 to 9       177/205
(86 %)
0 diff
(100 %id)
AA477006 ovarian tumor, ovary .b 4411 to 4906 1 to 496       496/497
(99 %)
3 diff
(99.4 %id)
BM689887 eye, Retina Foveal and Macular .b 4434 to 4853 9 to 428     Possibly primed on the genome, locally A rich (21/24 A in genome downstream of last aligned base) 420/428
(98 %)
6 diff
(98.6 %id)
DA587353 lung .b 4556 to 5116 2 to 562   capped   561/561
(100 %)
2 diff
(99.7 %id)
BE693575 breast .b 4846 to 5221 390 to 11       380/390
(97 %)
0 diff
(100 %id)
CR744810   .b 4857 to 5638 1 to 782       782/782
(100 %)
3 diff
(99.7 %id)
AW604171 colon .b 4872 to 5186 1 to 315       315/315
(100 %)
2 diff
(99.4 %id)
AA424293 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 4886 to 5296 1 to 411       411/411
(100 %)
6 diff
(98.6 %id)
AA280207 germinal center B cell .b 4962 to 5272 1 to 311   fully sequenced,   311/311
(100 %)
2 diff
(99.4 %id)
AW975489   .b 4966 to 5559 593 to 1   tiling clone, Submitted on the opposite strand 593/633
(93 %)
1 diff
(99.9 %id)
BQ013742 placenta .b 5000 to 5560 576 to 18   AAA Possibly primed on the genome, locally A rich (21/24 A in genome downstream of last aligned base) 559/559
(100 %)
4 diff
(99.3 %id)
AI052257 liver and spleen .b 5016 to 5564 552 to 4       549/552
(99 %)
0 diff
(100 %id)
AA477782 ovarian tumor, ovary .b 5099 to 5560 462 to 1       462/462
(100 %)
1 diff
(99.8 %id)
N78645 lung .b 5107 to 5560 460 to 1       460/460
(100 %)
8 diff
(98.3 %id)
AW292963   .b 5132 to 5560 445 to 18   AAA Possibly primed on the genome, locally A rich (21/24 A in genome downstream of last aligned base) 428/428
(100 %)
1 diff
(99.8 %id)
AA906590 pooled .b 5140 to 5564 424 to 1       424/424
(100 %)
1 diff
(99.8 %id)
AI707991 colon .b 5170 to 5551 384 to 3       382/384
(99 %)
0 diff
(100 %id)
BM661960 eye, Retina Foveal and Macular .b 5173 to 5560 406 to 19   AAA Possibly primed on the genome, locally A rich (21/24 A in genome downstream of last aligned base) 388/388
(100 %)
0 diff
(100 %id)
AA704932 liver and spleen .b 5187 to 5562 375 to 1       375/375
(100 %)
2 diff
(99.5 %id)
DA955519 Spleen .b 5226 to 5781 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
AI373688 uterus .b 5236 to 5700 470 to 6       465/470
(98 %)
0 diff
(100 %id)
AA280410 germinal center B cell .b 5242 to 5560 325 to 1   fully sequenced,   325/325
(100 %)
2 diff
(99.4 %id)
AI093216 uterus .b 5248 to 5700 460 to 8       453/460
(98 %)
0 diff
(100 %id)
AA687311 germinal center B cell .b 5298 to 5567 272 to 3       270/272
(99 %)
0 diff
(100 %id)
AA451742 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 5422 to 5698 277 to 1       277/277
(100 %)
0 diff
(100 %id)
AA827812 germinal center B cell .b 5430 to 5698 279 to 11   AAA Possibly primed on the genome, locally A rich (21/24 A in genome downstream of last aligned base) 269/269
(100 %)
0 diff
(100 %id)
AI630334 blood .b 5806 to 6148 1 to 343       343/422
(81 %)
3 diff
(99.3 %id)
BQ182169 Knee, Osteoarthritic Cartilage .b 6783 to 7454 689 to 19   AAA Possibly primed on the genome, locally A rich (21/24 A in genome downstream of last aligned base) 671/671
(100 %)
3 diff
(99.6 %id)
CK902403 insulinoma, Pancreas .b 6841 to 7450 610 to 1       610/610
(100 %)
1 diff
(99.9 %id)
BU073254 insulinoma, Pancreas .b 6947 to 7454 529 to 22   AAA Possibly primed on the genome, locally A rich (21/24 A in genome downstream of last aligned base) 508/508
(100 %)
0 diff
(100 %id)
AW029313 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .b 7029 to 7454 426 to 1       426/437
(97 %)
1 diff
(99.8 %id)
AA847840 germinal center B cell .b 7041 to 7447 434 to 28   AAA Possibly primed on the genome, locally A rich (21/24 A in genome downstream of last aligned base) 407/407
(100 %)
1 diff
(99.8 %id)
AA564430 colon .b 7136 to 7454 319 to 1       319/319
(100 %)
0 diff
(100 %id)
BI548413 brain, hippocampus .c 1 to 551 1 to 575   tiling clone,   575/705
(81 %)
33 diff
(95.4 %id)
BC041387 Brain, hippocampus .c 6 to 4494 6 to 4492 Q228H S326P Q597K N598T V599S ... tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (21/24 A in genome downstream of last aligned base) 4487/4487
(100 %)
10 diff
(99.8 %id)
DR006113 Prostate .c 148 to 527 1 to 383   tiling clone,   383/383
(100 %)
4 diff
(99.0 %id)
DN831430 pooled .c 482 to 850 369 to 1     Submitted on the opposite strand 369/369
(100 %)
1 diff
(99.8 %id)
DA669879   .c 1416 to 1955 2 to 542   tiling clone, capped   541/541
(100 %)
1 diff
(99.9 %id)
CV029491 mixed .c 1725 to 2306 1 to 582   tiling clone,   582/582
(100 %)
0 diff
(100 %id)
AU139537 placenta .c 2556 to 3169 2 to 616   capped   615/619
(99 %)
9 diff
(98.6 %id)
AK001953 placenta .c 2605 to 4453 1 to 1849   tiling clone, available from FLJ,   1849/1849
(100 %)
1 diff
(100.0 %id)
AU136913 placenta .c 2606 to 3368 2 to 773   capped   772/777
(99 %)
15 diff
(98.1 %id)
BX485665   .c 3002 to 3674 1 to 673       673/673
(100 %)
0 diff
(100 %id)
AA206565   .c 3006 to 3482 1 to 470       470/502
(93 %)
12 diff
(97.7 %id)
DB379909 placenta .c 3808 to 4381 573 to 1       573/585
(97 %)
17 diff
(97.1 %id)
AU156930 placenta .c 3905 to 4453 547 to 1       547/550
(99 %)
25 diff
(95.5 %id)
AK090622   .d 1 to 1977 1 to 1977 exact tiling clone, available from FLJ,   1977/1977
(100 %)
1 diff
(100.0 %id)
AX746539   .d 1 to 1977 1 to 1977 exact     1977/1977
(100 %)
1 diff
(100.0 %id)
DA048905   .d 2 to 556 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
DB296212   .d 1419 to 1977 562 to 1       562/562
(100 %)
6 diff
(99.0 %id)
AK300325 placenta .e 1 to 1421 2 to 1422   tiling clone,   1422/1422
(100 %)
2 diff
(99.9 %id)
DC381722 placenta .e 1 to 598 2 to 599       599/599
(100 %)
0 diff
(100 %id)
DC423640 uterus .e 1 to 529 1 to 533       533/533
(100 %)
4 diff
(99.3 %id)
AK002037 placenta .e 1287 to 4024 1 to 2738 exact tiling clone, available from FLJ,   2738/2739
(99 %)
2 diff
(100.0 %id)
AU137844 placenta .e 1288 to 1981 2 to 695   capped   694/694
(100 %)
2 diff
(99.8 %id)
AU157336 placenta .e 3510 to 4024 519 to 2   tiling clone,   518/534
(97 %)
0 diff
(100 %id)
AL832717 human bone marrow .f 1 to 4371 1 to 4375 R46C K260E G326W T327N F328L ... tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (21/24 A in genome downstream of last aligned base) 4375/4375
(100 %)
18 diff
(99.6 %id)
BF754329 colon .f 1930 to 2334 23 to 428       406/428
(94 %)
6 diff
(98.6 %id)
H38830 eye, retina .f 2034 to 2216 34 to 216     Submitted on the opposite strand 183/216
(84 %)
5 diff
(97.7 %id)
AA017247 eye, retina .f 2034 to 2370 45 to 383   tiling clone, Submitted on the opposite strand 339/429
(79 %)
4 diff
(99.1 %id)
AA279873 germinal center B cell .f 2559 to 2845 1 to 287       287/287
(100 %)
3 diff
(99.0 %id)
BX117554 eye, retina .f 3574 to 4366 793 to 1   tiling clone, Submitted on the opposite strand 793/793
(100 %)
0 diff
(100 %id)
AW501678 lymph .f 3693 to 4129 8 to 444       437/444
(98 %)
11 diff
(97.6 %id)
AW502554 lymph .f 3693 to 4174 8 to 489       482/489
(98 %)
6 diff
(98.8 %id)
TI_154156752   .f 3693 to 4202 87 to 596       510/510
(100 %)
4 diff
(99.3 %id)
TI_154158027   .f 3693 to 4320 91 to 718       628/631
(99 %)
11 diff
(98.3 %id)
AA017283 eye, retina .f 3925 to 4368 451 to 1     Submitted on the opposite strand 451/472
(95 %)
14 diff
(97.1 %id)
AA748418 germinal center B cell .f 3951 to 4375 430 to 6       425/430
(98 %)
0 diff
(100 %id)
AA279534 germinal center B cell .f 3977 to 4371 395 to 1       395/395
(100 %)
0 diff
(100 %id)
H38586 eye, retina .f 3996 to 4368 380 to 2     Submitted on the opposite strand 379/434
(87 %)
0 diff
(100 %id)
AA554052 colon .f 4096 to 4368 273 to 1       273/273
(100 %)
0 diff
(100 %id)
DA862691 placenta .g -10 to 547 2 to 559   capped   558/558
(100 %)
3 diff
(99.5 %id)
NM_001159644.1   .g 1 to 1989 8 to 1996 exact RefSeq, AAA Possibly primed on the genome, locally A rich (21/24 A in genome downstream of last aligned base) 1996/1996
(100 %)
0 diff
(100 %id)
DA856163 placenta .g 1 to 582 8 to 590   capped   589/589
(100 %)
3 diff
(99.5 %id)
DB270108 uterus .g 1 to 553 2 to 554   tiling clone, capped   553/553
(100 %)
0 diff
(100 %id)
BC025708 Pancreas, Spleen, adult pooled .g 33 to 1989 1 to 1957 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (21/24 A in genome downstream of last aligned base) 1957/1957
(100 %)
0 diff
(100 %id)
BI834198 pooled pancreas and spleen .g 33 to 833 1 to 803   available from MGC,   803/803
(100 %)
10 diff
(98.8 %id)
TI_57164529   .g 33 to 833 68 to 870       803/870
(92 %)
14 diff
(98.4 %id)
BI770083 pooled lung and spleen .g 160 to 1000 1 to 836       836/836
(100 %)
10 diff
(98.9 %id)
TI_57178263   .g 160 to 1000 37 to 872       836/872
(95 %)
12 diff
(98.7 %id)
BC111024 Lung, Spleen, fetal, pooled .g 161 to 1989 1 to 1829 exact AAA Possibly primed on the genome, locally A rich (21/24 A in genome downstream of last aligned base) 1829/1829
(100 %)
0 diff
(100 %id)
TI_1948091278   .g 362 to 841 129 to 608   fully sequenced, AAA   480/608
(78 %)
6 diff
(99.1 %id)
TI_1948091279   .g 780 to 1285 627 to 123   fully sequenced,   505/627
(80 %)
0 diff
(100 %id)
DA371159 thalamus .h 1 to 584 2 to 584   tiling clone, capped   583/583
(100 %)
2 diff
(99.7 %id)
R98750 liver and spleen .h 507 to 951 1 to 450   tiling clone,   450/460
(97 %)
16 diff
(96.6 %id)
R98751 liver and spleen .h 1865 to 2247 385 to 1   tiling clone,   385/385
(100 %)
2 diff
(99.5 %id)
TI_153990440   .i-u 1 to 705 42 to 745 exact tiling clone, Submitted on the opposite strand 704/977
(72 %)
10 diff
(99.0 %id)
AW206400   .i-u 2 to 571 1 to 570 exact tiling clone, Submitted on the opposite strand 570/570
(100 %)
4 diff
(99.3 %id)
DB228850 trachea .i-u 123 to 694 2 to 573   tiling clone, capped   572/572
(100 %)
1 diff
(99.9 %id)
DB222746 trachea .i-u 132 to 668 2 to 541   capped   540/540
(100 %)
3 diff
(99.5 %id)
AL360258   .j-u 1 to 2152 1 to 2150 exact tiling clone, AAA Possibly primed on the genome, locally A rich (21/24 A in genome downstream of last aligned base) 2150/2150
(100 %)
2 diff
(100.0 %id)
R83166 liver and spleen .j-u 406 to 813 1 to 410 E44R L45A G46R L47V P48T ...     410/410
(100 %)
8 diff
(98.1 %id)
W04900 liver and spleen .j-u 406 to 768 1 to 366       366/366
(100 %)
6 diff
(98.4 %id)
R93764 liver and spleen .j-u 407 to 912 1 to 515 C68W S69Q S70Q H71P S72Q ...     515/515
(100 %)
10 diff
(98.1 %id)
R93713 liver and spleen .j-u 1635 to 2020 418 to 11       408/421
(96 %)
0 diff
(100 %id)
R83167 liver and spleen .j-u 1676 to 2017 344 to 1       344/404
(85 %)
2 diff
(99.6 %id)
CB992767 placenta, pre-eclamptic placenta .k 1 to 770 27 to 804 exact tiling clone,   778/813
(95 %)
20 diff
(97.6 %id)
CB992386 placenta, pre-eclamptic placenta .k 1 to 479 27 to 505       479/524
(91 %)
7 diff
(98.7 %id)
CB993781 placenta, pre-eclamptic placenta .k 1 to 685 27 to 728 exact tiling clone,   702/864
(81 %)
27 diff
(96.9 %id)
AA309413 Liver .l-u 1 to 449 1 to 449 exact tiling clone,   449/449
(100 %)
0 diff
(100 %id)
BG961584 colon .m-u 1 to 377 12 to 388 V10D A16L G17W C26W L28F tiling clone,   377/388
(97 %)
6 diff
(98.5 %id)
AL832048 human bone marrow Gene MCTP2, variant not shown       available from DKFZ, AAA Suspected internal deletion, this clone was ignored    
BQ334180 marrow Gene MCTP2, variant not shown              
AV651960 corresponding non cancerous liver tissue Gene MCTP2, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
DB237787 trachea Gene MCTP2, variant not shown       capped      
DB350419 trachea Gene MCTP2, variant not shown              
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i-u, .j-u, .k, .l-u, .m-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC