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Gene MCF2L2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
107 supporting clones for gene MCF2L2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA226612 brain .a 1 to 517 2 to 518   tiling clone, capped   517/517
(100 %)
0 diff
(100 %id)
DR000125 fetal brain .a 237 to 855 1 to 620   tiling clone,   620/620
(100 %)
7 diff
(98.9 %id)
NM_015078.2   .a 447 to 5218 1 to 4772   RefSeq,   4772/4772
(100 %)
2 diff
(100.0 %id)
AY172737   .a 697 to 3881 5 to 3189   tiling clone,   3185/3189
(99 %)
11 diff
(99.7 %id)
DA685630   .a 811 to 1342 2 to 533   capped   532/532
(100 %)
0 diff
(100 %id)
AB020668 brain .a 933 to 5218 1 to 4282   tiling clone, available from KIAA,   4282/4282
(100 %)
7 diff
(99.9 %id)
AI871372 anaplastic oligodendroglioma, brain .a 1014 to 1630 617 to 1       617/617
(100 %)
6 diff
(99.1 %id)
AA352505   .a 1197 to 1445 1 to 251       251/252
(99 %)
7 diff
(97.3 %id)
BQ359922 head_normal .a 1303 to 1712 1 to 415       415/415
(100 %)
23 diff
(94.5 %id)
BQ359928 head_normal .a 1303 to 1712 1 to 415       415/415
(100 %)
23 diff
(94.5 %id)
BQ359934 head_normal .a 1303 to 1712 1 to 415       415/415
(100 %)
23 diff
(94.5 %id)
BQ359940 head_normal .a 1303 to 1712 1 to 415       415/415
(100 %)
23 diff
(94.5 %id)
DA530797 brain .a 1304 to 1914 2 to 612   tiling clone, capped   611/611
(100 %)
3 diff
(99.6 %id)
AW368783 head_neck .a 1568 to 1757 1 to 190       190/190
(100 %)
1 diff
(99.5 %id)
DA097841 cerebellum .a 2689 to 3248 2 to 562   capped   561/561
(100 %)
2 diff
(99.7 %id)
BF530631 anaplastic oligodendroglioma with 1p/19qloss, brain .a 2944 to 3683 13 to 746   available from MGC,   737/967
(76 %)
17 diff
(98.3 %id)
CR998883 T-Lymphocytes .a 2973 to 3854 1 to 881       881/881
(100 %)
2 diff
(99.8 %id)
DA348492 substantia nigra .a 4673 to 5257 2 to 582   tiling clone, capped   581/581
(100 %)
3 diff
(99.5 %id)
DA109499 cerebellum .b 1 to 492 2 to 493   tiling clone, capped   492/492
(100 %)
0 diff
(100 %id)
DA701463   .b 378 to 866 2 to 491   tiling clone, capped   490/490
(100 %)
1 diff
(99.8 %id)
AK310962 trachea .b 753 to 3270 1 to 2518   tiling clone,   2518/2518
(100 %)
2 diff
(100.0 %id)
DB239102 trachea .b 754 to 1343 2 to 591   capped   590/590
(100 %)
2 diff
(99.7 %id)
CN275318 embryonic stem cells, DMSO-treated H9 cellline .b 867 to 1442 1 to 576       576/576
(100 %)
1 diff
(99.9 %id)
BX487485   .b 3163 to 3722 1 to 560   tiling clone,   560/560
(100 %)
0 diff
(100 %id)
BP384737 pancreatic islet .b 3499 to 3758 260 to 1       260/264
(98 %)
1 diff
(99.7 %id)
AA491685 Ewing's sarcoma .b 3499 to 3731 1 to 233       233/240
(97 %)
2 diff
(99.2 %id)
AA513148 Ewing's sarcoma .b 3499 to 3731 1 to 233       233/240
(97 %)
2 diff
(99.2 %id)
DB516772.
matches multiple genes
testis .b 3500 to 3934 435 to 1   tiling clone, also hits gene B3GNT5 435/435
(100 %)
0 diff
(100 %id)
DB559493 hypothalamus .b 3500 to 3930 431 to 1       431/431
(100 %)
5 diff
(98.9 %id)
TI_149295921   .b 3621 to 4396 858 to 91   AAA Possibly primed on the genome, locally A rich (17/19 A in genome downstream of last aligned base) 768/925
(83 %)
15 diff
(98.4 %id)
BG957809 colon .b 3638 to 4032 1 to 392       392/392
(100 %)
7 diff
(98.3 %id)
BF086634 placenta_normal .b 3710 to 4050 14 to 353       340/353
(96 %)
4 diff
(98.9 %id)
BF887671 testis_normal .b 3722 to 4050 14 to 342       329/342
(96 %)
6 diff
(98.3 %id)
AW605836 head_neck .b 3728 to 4056 7 to 335       329/335
(98 %)
6 diff
(98.3 %id)
BF909277 uterus_tumor .b 3737 to 4063 1 to 332       332/347
(95 %)
35 diff
(90.0 %id)
BE934793 head_neck .b 3747 to 4018 1 to 269       269/271
(99 %)
9 diff
(96.7 %id)
BE934792 head_neck .b 3769 to 3993 8 to 236       229/236
(97 %)
6 diff
(97.5 %id)
BF086632 placenta_normal .b 3781 to 4050 1 to 269       269/269
(100 %)
3 diff
(98.9 %id)
BU683997 lung, Primary Lung Cystic Fibrosis EpithelialCells .b 3829 to 4396 586 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (17/19 A in genome downstream of last aligned base) 568/568
(100 %)
1 diff
(99.9 %id)
BF839565 head_neck .b 3935 to 4208 30 to 302       273/302
(90 %)
6 diff
(98.1 %id)
BF839566 head_neck .b 3935 to 4208 13 to 285       273/285
(95 %)
6 diff
(97.9 %id)
AI370362 follicular lymphoma, lymph node .b 4052 to 4436 385 to 1       385/385
(100 %)
1 diff
(99.8 %id)
BE185334 head_neck .b 4068 to 4510 1 to 443       443/443
(100 %)
12 diff
(97.3 %id)
AW577195 breast .b 4337 to 4836 14 to 514   tiling clone,   501/515
(97 %)
2 diff
(99.7 %id)
BC064632 Pancreas, Spleen, adult pooled .c 1 to 2393 1 to 2393 Q414L F625S tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (17/19 A in genome downstream of last aligned base) 2393/2393
(100 %)
3 diff
(99.9 %id)
BM920156 pooled pancreas and spleen .c 13 to 987 1 to 972       972/1042
(93 %)
21 diff
(98.0 %id)
AK124500 cerebellum .d 1 to 3030 2 to 3031 I359L tiling clone, available from FLJ,   3031/3031
(100 %)
2 diff
(100.0 %id)
DA088987 cerebellum .d 1 to 531 2 to 532   capped   531/531
(100 %)
0 diff
(100 %id)
AA325939 brain, cerebellum .d 12 to 336 1 to 325       325/325
(100 %)
2 diff
(99.4 %id)
DB298229 cerebellum .d 2492 to 3030 539 to 1       539/539
(100 %)
0 diff
(100 %id)
CA848607 Pancreas, Purified pancreatic islet .d 2530 to 3097 11 to 578   tiling clone,   568/578
(98 %)
6 diff
(99.0 %id)
BG993905 head_neck .d 2659 to 3084 21 to 442       422/442
(95 %)
6 diff
(98.7 %id)
TI_149305221   .d 2731 to 3499 875 to 114   AAA Possibly primed on the genome, locally A rich (17/19 A in genome downstream of last aligned base) 762/924
(82 %)
11 diff
(98.9 %id)
BU685601 lung, Primary Lung Epithelial Cells .d 2876 to 3499 641 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (17/19 A in genome downstream of last aligned base) 623/623
(100 %)
5 diff
(99.2 %id)
FN059432 breast carcinoma .d 3233 to 3321 1 to 89       89/89
(100 %)
0 diff
(100 %id)
CA848316 Pancreas, Purified pancreatic islet .d 3238 to 3722 485 to 1   tiling clone,   485/485
(100 %)
0 diff
(100 %id)
AI074993 colon, colon tumor .d 3391 to 3866 476 to 1       476/476
(100 %)
0 diff
(100 %id)
TI_149305341   .d 3407 to 4204 871 to 85   AAA Possibly primed on the genome, locally A rich (17/19 A in genome downstream of last aligned base) 787/935
(84 %)
8 diff
(99.2 %id)
BU685704 lung, Primary Lung Epithelial Cells .d 3447 to 4204 766 to 17   tiling clone, AAA Possibly primed on the genome, locally A rich (17/19 A in genome downstream of last aligned base) 750/750
(100 %)
8 diff
(99.0 %id)
BF987427 placenta_normal .d 3528 to 3679 12 to 160       149/173
(86 %)
9 diff
(94.8 %id)
AI742743 pooled .d 4102 to 4449 516 to 169       348/516
(67 %)
0 diff
(100 %id)
AI039637   .d 4190 to 4449 428 to 169   tiling clone,   260/428
(60 %)
0 diff
(100 %id)
EL953348 eyeball .d 4322 to 4930 1 to 608   tiling clone,   608/608
(100 %)
6 diff
(99.1 %id)
BG223230 moderate to poorly differentiated invasivecarcinoma, tongue .d 4531 to 4918 40 to 433   tiling clone,   394/433
(90 %)
6 diff
(98.7 %id)
BF749251 breast_normal .d 4831 to 5245 1 to 414   tiling clone,   414/414
(100 %)
9 diff
(97.9 %id)
BX649003 human retina .e 1 to 7813 1 to 7836 A237V T336A tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (17/19 A in genome downstream of last aligned base) 7836/7836
(100 %)
23 diff
(99.8 %id)
DA532586 brain .e 6309 to 6886 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
AW592027 pooled .e 7355 to 7812 465 to 4       462/465
(99 %)
1 diff
(99.8 %id)
BX648525 human retina .f 1 to 2781 1 to 2780 exact tiling clone, available from DKFZ, AAA   2780/3119
(89 %)
21 diff
(99.4 %id)
AW368785 head_neck .f 1240 to 1572 1 to 333   tiling clone,   333/336
(99 %)
4 diff
(98.9 %id)
BC029074 Brain, anaplastic oligodendroglioma with1p/19q loss .g 1 to 2339 1 to 2335 T99A tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (17/19 A in genome downstream of last aligned base) 2335/2335
(100 %)
5 diff
(99.8 %id)
DA300306 hippocampus .g 1959 to 2527 2 to 570   tiling clone, capped   569/569
(100 %)
1 diff
(99.9 %id)
DA130211 alzheimer cortex .g 2500 to 3035 2 to 540   tiling clone, capped   539/539
(100 %)
1 diff
(99.9 %id)
TI_57217408   .g 2780 to 3421 34 to 683   tiling clone,   650/857
(75 %)
18 diff
(97.9 %id)
BI754707 brain .g 2781 to 3421 1 to 649   tiling clone,   649/823
(78 %)
18 diff
(97.9 %id)
BE670334 carcinoid, lung .g 3055 to 3535 1 to 481   tiling clone, Submitted on the opposite strand 481/481
(100 %)
4 diff
(99.2 %id)
BM702800 eye, Retina Foveal and Macular .g 3429 to 3954 1 to 526   tiling clone,   526/526
(100 %)
6 diff
(98.9 %id)
AI186173 lung .g 3740 to 4270 538 to 12   AAA Possibly primed on the genome, locally A rich (17/19 A in genome downstream of last aligned base) 527/527
(100 %)
15 diff
(97.2 %id)
DB567168 hypothalamus .g 3802 to 4270 1 to 469   tiling clone, Submitted on the opposite strand 469/469
(100 %)
0 diff
(100 %id)
DB554522 hypothalamus .g 3816 to 4270 1 to 455     Submitted on the opposite strand 455/455
(100 %)
4 diff
(99.2 %id)
DB532184 hippocampus .g 3845 to 4270 1 to 425     Submitted on the opposite strand 425/425
(100 %)
2 diff
(99.6 %id)
AW137797   .g 3845 to 4267 444 to 22   AAA Possibly primed on the genome, locally A rich (17/19 A in genome downstream of last aligned base) 423/426
(99 %)
0 diff
(100 %id)
AI302030 carcinoid, lung .g 3893 to 4270 394 to 17   AAA Possibly primed on the genome, locally A rich (17/19 A in genome downstream of last aligned base) 378/378
(100 %)
0 diff
(100 %id)
AK301698 testis .h 1 to 1099 1 to 958 Q5L I6R L7H K8L E9C ... tiling clone, Suspected internal deletion 958/958
(100 %)
1 diff
(99.9 %id)
DC394587 testis .h 1 to 710 1 to 569     Suspected internal deletion 569/569
(100 %)
1 diff
(99.9 %id)
TI_227712402   .i 1 to 787 863 to 82 E2D L3* tiling clone, AAA Possibly primed on the genome, locally A rich (17/19 A in genome downstream of last aligned base) 782/1005
(77 %)
11 diff
(99.0 %id)
BI460415 testis .j 1 to 775 1 to 776 E75A F76V H77S R78* tiling clone,   776/776
(100 %)
24 diff
(97.0 %id)
CN354594 embryonic stem cells, DMSO-treated H9 cellline .k 1 to 690 1 to 690 I6L tiling clone,   690/690
(100 %)
2 diff
(99.8 %id)
BX109053   .l 1 to 471 1 to 471   tiling clone,   471/471
(100 %)
1 diff
(99.8 %id)
CD367113 Alveolar Macrophage, lung .l 25 to 684 677 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (17/19 A in genome downstream of last aligned base) 659/660
(99 %)
1 diff
(99.9 %id)
AI208983   .l 118 to 689 576 to 4   tiling clone,   571/576
(99 %)
9 diff
(98.5 %id)
DA193910 amygdala .m 1 to 588 2 to 589 T17A tiling clone, capped   588/588
(100 %)
2 diff
(99.7 %id)
DA230935 brain .n 1 to 569 2 to 569   tiling clone, capped   568/568
(100 %)
2 diff
(99.7 %id)
AI903002 breast .n 552 to 691 140 to 1   tiling clone,   140/140
(100 %)
0 diff
(100 %id)
BX647790 human retina .o 1 to 7648 1 to 7647 Q83R tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (17/19 A in genome downstream of last aligned base) 7647/7647
(100 %)
11 diff
(99.9 %id)
BX642437   .o 1 to 671 1 to 671 Q83R   Possibly primed on the genome, locally A rich (17/19 A in genome downstream of last aligned base) 671/671
(100 %)
2 diff
(99.8 %id)
T06006   .o 1874 to 2140 161 to 428       268/429
(62 %)
5 diff
(98.9 %id)
T06007   .o 2697 to 3044 351 to 1       351/351
(100 %)
6 diff
(98.3 %id)
BX642438   .o 6924 to 7648 744 to 20   AAA Possibly primed on the genome, locally A rich (17/19 A in genome downstream of last aligned base) 725/725
(100 %)
0 diff
(100 %id)
DB485455 hypothalamus .p 1 to 416 6 to 419       419/419
(100 %)
10 diff
(97.7 %id)
DB496149 hypothalamus .p 1 to 477 6 to 482       482/482
(100 %)
5 diff
(99.0 %id)
DA333032 hippocampus .p 1 to 571 2 to 572 exact tiling clone, capped   571/571
(100 %)
0 diff
(100 %id)
CN354595 embryonic stem cells, DMSO-treated H9 cellline .q 1 to 460 1 to 460 exact tiling clone,   460/460
(100 %)
2 diff
(99.6 %id)
AL704259 human skeletal muscle .q 111 to 546 10 to 449   tiling clone,   440/440
(100 %)
15 diff
(96.6 %id)
DA319937 hippocampus .r 1 to 563 2 to 564 exact tiling clone, capped   563/563
(100 %)
0 diff
(100 %id)
BG189169   .s-u 1 to 458 6 to 464 D3H C24R D26G AAA   464/533
(87 %)
32 diff
(94.0 %id)
BG184963   .s-u 1 to 527 4 to 531 F8L K9* tiling clone, AAA Possibly primed on the genome, locally A rich (17/19 A in genome downstream of last aligned base) 531/531
(100 %)
4 diff
(99.3 %id)
BG192266   .s-u 3 to 527 1 to 525   tiling clone, AAA Possibly primed on the genome, locally A rich (17/19 A in genome downstream of last aligned base) 525/525
(100 %)
3 diff
(99.5 %id)
BM929566 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .t 1 to 202 1 to 202 exact tiling clone, AAA   202/202
(100 %)
2 diff
(99.1 %id)
BM685109 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid Gene MCF2L2, variant not shown       fully sequenced, This clone was ignored    
BM932096 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid Gene MCF2L2, variant not shown       fully sequenced, This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o, .p, .q, .r, .s-u, .t Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI