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Gene SNHG4andMATR3TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
795 representative clones for gene SNHG4andMATR3 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AK307872 hippocampus .a 1 to 3249 1 to 3248 K716R V717W D718T K719R I720S ... tiling clone,   3248/3248
(100 %)
7 diff
(99.8 %id)
DC333260 hippocampus .a 1 to 568 1 to 567       567/567
(100 %)
4 diff
(99.3 %id)
DC309025 cerebellum .a 351 to 930 1 to 581       581/581
(100 %)
3 diff
(99.5 %id)
BP228759 brain .a 351 to 933 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
BP349522 brain .a 351 to 928 1 to 581   tiling clone,   581/581
(100 %)
9 diff
(98.5 %id)
DC299294   .a 352 to 926 1 to 576       576/576
(100 %)
3 diff
(99.5 %id)
DC425910 hippocampus .a 3696 to 4254 560 to 1   tiling clone,   560/560
(100 %)
2 diff
(99.7 %id)
AF117236 hypothalamus .b 1 to 3811 1 to 3815 P257S P274S E279V F281V G283W ... tiling clone, AAA   3815/3815
(100 %)
24 diff
(99.4 %id)
AA584433 pheochromocytoma .b 1 to 495 1 to 496     Submitted on the opposite strand 496/497
(99 %)
5 diff
(99.0 %id)
DA990461 synovial membrane tissue from rheumatioidarthritis .c 1 to 454 2 to 457   tiling clone, capped   456/456
(100 %)
2 diff
(99.6 %id)
DB149555 thymus .c 35 to 509 2 to 476   capped   475/475
(100 %)
0 diff
(100 %id)
DA504577 brain .c 175 to 763 2 to 590   capped   589/589
(100 %)
2 diff
(99.7 %id)
DB079589 testis .c 177 to 732 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DA145781 amygdala .c 188 to 755 2 to 569   capped   568/571
(99 %)
2 diff
(99.7 %id)
DA246494 brain .c 191 to 762 2 to 574   capped   573/573
(100 %)
3 diff
(99.5 %id)
DA247937 brain .c 191 to 781 2 to 592   capped   591/591
(100 %)
0 diff
(100 %id)
DA521274 brain .c 191 to 760 2 to 572   capped   571/571
(100 %)
3 diff
(99.5 %id)
DA406860 thalamus .c 203 to 769 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA204101 brain .c 204 to 797 2 to 595   capped   594/594
(100 %)
0 diff
(100 %id)
DA217593 brain .c 204 to 732 2 to 530   capped   529/529
(100 %)
0 diff
(100 %id)
DA417214 thalamus .c 204 to 760 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DB070997 testis .c 204 to 757 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA800057 brain .c 215 to 768 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA238790 brain .c 217 to 805 2 to 590   tiling clone, capped   589/589
(100 %)
0 diff
(100 %id)
AB018266 brain .c 219 to 4020 1 to 3803 exact tiling clone, available from KIAA,   3803/3803
(100 %)
5 diff
(99.9 %id)
BX426362 B cells (Ramos cell line) .c 221 to 1070 1 to 851       851/851
(100 %)
4 diff
(99.6 %id)
DA322242 hippocampus .c 228 to 784 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
BX426361 B cells (Ramos cell line) .c 3074 to 3976 903 to 1   tiling clone,   903/903
(100 %)
8 diff
(99.2 %id)
DB166892 kidney, tumor tissue .d 1 to 565 2 to 567   tiling clone, capped   566/566
(100 %)
3 diff
(99.5 %id)
CR749625 retina .d 43 to 3994 1 to 3954 S206G R373G R412K available from DKFZ, AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 3954/3954
(100 %)
10 diff
(99.8 %id)
NM_199189.1   .d 43 to 4057 1 to 4015 exact RefSeq, AAA   4015/4015
(100 %)
0 diff
(100 %id)
DA768056 brain .d 44 to 614 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
BX382136 Placenta Cot 25-normalized .d 283 to 1320 1 to 1026   tiling clone,   1026/1052
(97 %)
25 diff
(97.7 %id)
BC015031 Skin, melanotic melanoma. .d 292 to 4053 1 to 3763 exact tiling clone, available from MGC, AAA   3763/3763
(100 %)
4 diff
(99.9 %id)
DA338305 hippocampus .d 338 to 923 2 to 587   capped   586/586
(100 %)
0 diff
(100 %id)
GD138367   .d 427 to 521 95 to 1     Submitted on the opposite strand 95/100
(95 %)
1 diff
(99.0 %id)
DA115608 cerebellum .d 430 to 795 2 to 367   capped   366/366
(100 %)
0 diff
(100 %id)
DA228137 brain .d 430 to 992 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DB195831 trachea .d 441 to 991 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
DB073145 testis .d 467 to 1015 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
CV023364 mixed .d 470 to 1077 1 to 608       608/608
(100 %)
0 diff
(100 %id)
BU178071 melanotic melanoma, skin .d 480 to 1338 1 to 864       864/864
(100 %)
9 diff
(99.0 %id)
DA802609 brain .d 503 to 1047 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
BM476519 lymph, lymphoma, cell line .d 511 to 1478 1 to 970       970/1055
(91 %)
25 diff
(97.7 %id)
BM463230 embryonal carcinoma, cell line, testis .d 525 to 1537 28 to 1038       1011/1038
(97 %)
14 diff
(98.7 %id)
DB063421 testis .d 555 to 1087 2 to 534   capped   533/533
(100 %)
0 diff
(100 %id)
DA734935   .d 650 to 1347 2 to 705   capped   704/806
(87 %)
15 diff
(98.2 %id)
CN308151 embryonic stem cells, DMSO-treated H9 cellline .d 686 to 909 1 to 224       224/224
(100 %)
0 diff
(100 %id)
CX871585 embryonic stem .d 713 to 1542 1 to 830       830/830
(100 %)
0 diff
(100 %id)
DA295962 hippocampus .d 735 to 1288 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
BP202460 amygdala .d 796 to 1378 1 to 583       583/583
(100 %)
0 diff
(100 %id)
DA456223 tongue, tumor tissue .d 801 to 1375 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DB064971 testis .d 806 to 1332 2 to 528   capped   527/527
(100 %)
0 diff
(100 %id)
DA406078 thalamus .d 810 to 1394 2 to 586   capped   585/585
(100 %)
0 diff
(100 %id)
DB093563 testis .d 828 to 1384 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
CN308186 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .d 855 to 1324 1 to 470       470/470
(100 %)
0 diff
(100 %id)
CN308199 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .d 858 to 1221 1 to 364       364/364
(100 %)
0 diff
(100 %id)
BP201273 amygdala .d 881 to 1461 1 to 581       581/581
(100 %)
0 diff
(100 %id)
DA603387   .d 882 to 1652 2 to 771   capped   770/770
(100 %)
3 diff
(99.7 %id)
DA107887 cerebellum .d 913 to 1469 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DA289164 hippocampus .d 982 to 1532 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
DA509914 brain .d 993 to 1564 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
BE876803 large cell carcinoma, undifferentiated, lung .d 1014 to 1781 1 to 766       766/1027
(74 %)
17 diff
(98.4 %id)
DA720518   .d 1069 to 1629 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA499251 brain .d 1106 to 1669 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DB139506 thymus .d 1108 to 1648 2 to 542   capped   541/541
(100 %)
0 diff
(100 %id)
CD638537 pooled .d 1161 to 1836 1 to 675       675/678
(99 %)
2 diff
(99.8 %id)
CX163134 human embryonic stem cells differentiated toan early endodermal cell type .d 1164 to 2041 1 to 877       877/877
(100 %)
4 diff
(99.6 %id)
DB174590 kidney, tumor tissue .d 1170 to 1742 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA742652   .d 1177 to 1733 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DA952057 Spleen .d 1178 to 1739 8 to 569   capped   562/562
(100 %)
0 diff
(100 %id)
DA495129 brain .d 1198 to 1764 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA085948 cerebellum .d 1199 to 1774 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DA522549 brain .d 1203 to 1759 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DA491267 brain .d 1208 to 1766 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA662782   .d 1213 to 1749 2 to 538   capped   537/537
(100 %)
0 diff
(100 %id)
DB165031 thymus .d 1213 to 1806 2 to 595   capped   594/594
(100 %)
0 diff
(100 %id)
DA301755 hippocampus .d 1221 to 1794 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
CR981917 T-Lymphocytes .d 1235 to 2093 1 to 859       859/859
(100 %)
0 diff
(100 %id)
CU443817 epidermis .d 1283 to 1785 511 to 9     Submitted on the opposite strand 507/522
(97 %)
1 diff
(99.9 %id)
CU444919 epidermis .d 1283 to 1785 514 to 12     Submitted on the opposite strand 507/525
(96 %)
0 diff
(100 %id)
CU446669 epidermis .d 1283 to 1785 514 to 12     Submitted on the opposite strand 507/525
(96 %)
1 diff
(99.9 %id)
CU447830 epidermis .d 1283 to 1785 514 to 12     Submitted on the opposite strand 507/525
(96 %)
1 diff
(99.9 %id)
CU448624 epidermis .d 1283 to 1785 514 to 12     Submitted on the opposite strand 507/525
(96 %)
0 diff
(100 %id)
DA773846 brain .d 1303 to 1850 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
DB123892 thymus .d 1306 to 1882 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
AK001388   .d 1311 to 4000 1 to 2690   available from FLJ,   2690/2690
(100 %)
3 diff
(99.9 %id)
AU127278   .d 1312 to 1920 2 to 610   capped   609/610
(99 %)
4 diff
(99.4 %id)
DA587306 lung .d 1329 to 1890 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DA105001 cerebellum .d 1333 to 1910 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
CN308189 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .d 1333 to 1899 1 to 567       567/567
(100 %)
0 diff
(100 %id)
DA527720 brain .d 1362 to 1941 2 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
AL039548 testis .d 1363 to 1921 1 to 560     Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 560/563
(99 %)
6 diff
(99.0 %id)
CN308148 embryonic stem cells, cell lines H1, H7, andH9 .d 1371 to 2032 1 to 662       662/662
(100 %)
0 diff
(100 %id)
DA795900 brain .d 1377 to 1917 2 to 542   capped   541/541
(100 %)
0 diff
(100 %id)
DA918595 small intestine .d 1393 to 1954 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DA083935 cerebellum .d 1394 to 1962 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DA795568 brain .d 1395 to 1946 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DA868826 Prostate .d 1398 to 1925 2 to 529   capped   528/528
(100 %)
0 diff
(100 %id)
DA525227 brain .d 1401 to 1951 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
BU509566 leiomyosarcoma, uterus .d 1405 to 2152 1 to 756       756/939
(80 %)
6 diff
(99.4 %id)
DA514766 brain .d 1409 to 1962 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA527832 brain .d 1411 to 2010 2 to 601   capped   600/600
(100 %)
0 diff
(100 %id)
CN308131 embryonic stem cells, cell lines H1, H7, andH9 .d 1417 to 2052 1 to 636       636/636
(100 %)
0 diff
(100 %id)
DA509224 brain .d 1418 to 1991 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DA488142 brain .d 1428 to 2004 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DA748036   .d 1428 to 1994 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA794354 brain .d 1429 to 1889 2 to 462   capped   461/461
(100 %)
0 diff
(100 %id)
CN308173 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .d 1431 to 1916 1 to 486       486/486
(100 %)
0 diff
(100 %id)
EC458064 Prostate .d 1448 to 1530 83 to 1       83/83
(100 %)
1 diff
(98.8 %id)
BM905889 leiomyosarcoma, uterus .d 1459 to 2519 1 to 1063       1063/1065
(99 %)
44 diff
(95.9 %id)
DA782732 brain .d 1467 to 2042 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
BM311897 Pancreas, Purified pancreatic islet .d 1587 to 2221 11 to 645       635/645
(98 %)
0 diff
(100 %id)
CD357491 Blood vessels - aorta, basilar and artery .d 1593 to 2338 1 to 749       749/752
(99 %)
5 diff
(99.4 %id)
CB133883 Liver .d 1610 to 2177 1 to 568       568/568
(100 %)
0 diff
(100 %id)
CN308152 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .d 1612 to 2406 1 to 796       796/796
(100 %)
3 diff
(99.7 %id)
CU453186 epidermis .d 1647 to 1785 150 to 12     Submitted on the opposite strand 139/151
(92 %)
0 diff
(100 %id)
DA604768   .d 1663 to 2167 2 to 506   capped   505/505
(100 %)
0 diff
(100 %id)
BP374966 umbilical cord .d 1700 to 2280 1 to 581       581/581
(100 %)
0 diff
(100 %id)
DA167288 amygdala .d 1733 to 2289 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DB256149 uterus .d 1757 to 2335 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
M63483   .d 1761 to 3076 10 to 1325       1316/1328
(99 %)
13 diff
(99.1 %id)
DA692617   .d 1769 to 2326 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
AW383281 head_neck .d 1770 to 1958 188 to 1       188/211
(89 %)
16 diff
(92.5 %id)
AY007157   .d 1779 to 4056 1 to 2278       2278/2278
(100 %)
3 diff
(99.9 %id)
BU159653 eye, retinoblastoma .d 1780 to 2619 1 to 839       839/848
(98 %)
2 diff
(99.8 %id)
DA507047 brain .d 1784 to 2335 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DA805752 brain .d 1786 to 2332 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
EB387214 eye, optic nerve .d 1787 to 2600 1 to 814       814/814
(100 %)
0 diff
(100 %id)
DB124054 thymus .d 1819 to 2375 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
AW814786 stomach .d 1821 to 2346 569 to 44       526/569
(92 %)
3 diff
(99.5 %id)
DA211027 brain .d 1823 to 2386 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
CX870205 embryonic stem .d 1842 to 2601 1 to 760       760/760
(100 %)
0 diff
(100 %id)
DA514350 brain .d 1843 to 2397 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
CN308198 embryonic stem cells, cell lines H1, H7, andH9 .d 1847 to 2347 1 to 501       501/501
(100 %)
0 diff
(100 %id)
DB129203 thymus .d 1853 to 2410 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
CN308182 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .d 1868 to 2479 1 to 612       612/612
(100 %)
0 diff
(100 %id)
BQ228145 melanotic melanoma, skin .d 1888 to 2700 1 to 823       821/916
(89 %)
15 diff
(98.4 %id)
CB147637 Liver .d 1893 to 2475 1 to 583       583/583
(100 %)
0 diff
(100 %id)
DA209412 brain .d 1898 to 2463 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
BG033833 breast, mammary adenocarcinoma, cell line .d 1910 to 2623 1 to 717       717/1196
(59 %)
9 diff
(99.3 %id)
CX166498 human embryonic stem cells differentiated toan early endodermal cell type .d 1959 to 2731 1 to 773       773/773
(100 %)
0 diff
(100 %id)
CN308143 embryonic stem cells, cell lines H1, H7, andH9 .d 1988 to 2704 1 to 718       718/718
(100 %)
1 diff
(99.9 %id)
DA138991 alzheimer cortex .d 2001 to 2537 2 to 538   capped   537/537
(100 %)
0 diff
(100 %id)
DB353474   .d 2037 to 2569 533 to 1       533/533
(100 %)
11 diff
(98.0 %id)
CN308136 embryonic stem cells, DMSO-treated H9 cellline .d 2045 to 2728 1 to 684       684/684
(100 %)
0 diff
(100 %id)
BX477289   .d 2047 to 2598 1 to 552       552/552
(100 %)
0 diff
(100 %id)
AL046713 testis .d 2054 to 2646 1 to 593       593/593
(100 %)
0 diff
(100 %id)
AL041181 testis .d 2056 to 2456 1 to 401       401/401
(100 %)
0 diff
(100 %id)
AA363584 Bone .d 2060 to 2337 1 to 278       278/278
(100 %)
0 diff
(100 %id)
AJ708875 heart .d 2067 to 2599 1 to 533       533/533
(100 %)
0 diff
(100 %id)
DB364836   .d 2074 to 2598 524 to 1       524/538
(97 %)
16 diff
(97.1 %id)
CB134254 brain .d 2091 to 2714 1 to 624       624/624
(100 %)
0 diff
(100 %id)
BP260661 small intestine .d 2096 to 2677 1 to 582       582/582
(100 %)
0 diff
(100 %id)
DA041116 bladder .d 2101 to 2663 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
AL703235 human skeletal muscle .d 2102 to 2765 1 to 664       664/664
(100 %)
0 diff
(100 %id)
BM465655 eye, retinoblastoma .d 2108 to 3024 1 to 923       922/1037
(88 %)
14 diff
(98.7 %id)
DA416221 thalamus .d 2128 to 2695 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
BM468025 melanotic melanoma, skin .d 2171 to 3109 37 to 993       957/1013
(94 %)
29 diff
(97.2 %id)
BP292997 lung .d 2176 to 2759 1 to 584       584/584
(100 %)
0 diff
(100 %id)
DA498664 brain .d 2179 to 2756 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
BU189956 eye, retinoblastoma .d 2181 to 3049 1 to 872       872/873
(99 %)
7 diff
(99.2 %id)
DA693798   .d 2185 to 2748 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
CB147682 Liver .d 2186 to 2832 1 to 647       647/647
(100 %)
0 diff
(100 %id)
DA746831   .d 2193 to 2756 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
CN308141 embryonic stem cells, DMSO-treated H9 cellline .d 2194 to 2827 9 to 642       634/642
(98 %)
0 diff
(100 %id)
ES314714 occipital scalp hair, skin .d 2206 to 2349 1 to 144       144/144
(100 %)
0 diff
(100 %id)
BF934769 nervous_tumor .d 2209 to 2586 378 to 1     Submitted on the opposite strand 378/387
(97 %)
1 diff
(99.8 %id)
AA579344   .d 2211 to 2569 369 to 11   AAA   359/360
(99 %)
2 diff
(99.5 %id)
AA578603   .d 2211 to 2569 369 to 11   AAA   359/360
(99 %)
3 diff
(99.2 %id)
DA053888 cerebellum .d 2217 to 2960 2 to 742   capped   741/803
(92 %)
5 diff
(99.4 %id)
BU158709 embryonal carcinoma, cell line, testis .d 2218 to 2962 1 to 745       745/899
(82 %)
8 diff
(99.2 %id)
BM788531 stomach .d 2226 to 2860 1 to 635       635/635
(100 %)
0 diff
(100 %id)
BQ213244 embryonal carcinoma, cell line, testis .d 2233 to 3015 1 to 787       787/904
(87 %)
4 diff
(99.6 %id)
DA259701 caudate nucleus .d 2237 to 2800 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
CN308130 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .d 2286 to 2980 1 to 695       695/695
(100 %)
0 diff
(100 %id)
BM464509 leiomyosarcoma, uterus .d 2323 to 3410 29 to 1123       1095/1140
(96 %)
37 diff
(96.8 %id)
BM460216 eye, retinoblastoma .d 2335 to 3169 1 to 841       841/1020
(82 %)
17 diff
(98.4 %id)
CN308150 embryonic stem cells, cell lines H1, H7, andH9 .d 2353 to 3070 1 to 717       717/721
(99 %)
4 diff
(99.5 %id)
AI928366 Kidney .d 2385 to 2670 286 to 1       286/286
(100 %)
0 diff
(100 %id)
CB130373 Liver .d 2425 to 2913 1 to 489       489/489
(100 %)
0 diff
(100 %id)
TI_149307634   .d 2453 to 3174 805 to 92   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 714/933
(76 %)
16 diff
(98.3 %id)
AA329867   .d 2476 to 2645 1 to 170       170/170
(100 %)
0 diff
(100 %id)
BQ230055 melanotic melanoma, skin .d 2483 to 3212 1 to 734       734/962
(76 %)
10 diff
(99.0 %id)
CB216372 normal endometrium, mid-secretory phase,cycle day 23, uterus .d 2496 to 3102 1 to 607       607/607
(100 %)
0 diff
(100 %id)
AU117140 whole embryo, mainly head .d 2526 to 3336 2 to 816   capped   815/906
(89 %)
8 diff
(99.2 %id)
CB127003 cervix, Uterine .d 2527 to 3174 1 to 648       648/648
(100 %)
0 diff
(100 %id)
BE835270 prostate_normal .d 2547 to 2684 1 to 138       138/138
(100 %)
0 diff
(100 %id)
BE835349 prostate_normal .d 2547 to 2684 1 to 138       138/138
(100 %)
0 diff
(100 %id)
CB147661 Liver .d 2556 to 3222 667 to 1     Submitted on the opposite strand 667/667
(100 %)
0 diff
(100 %id)
CN308174 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .d 2569 to 3151 1 to 583       583/583
(100 %)
0 diff
(100 %id)
BM925736 brain .d 2595 to 3626 19 to 1065       1047/1066
(98 %)
26 diff
(97.6 %id)
BM786487 Ascites, stomach .d 2607 to 3214 1 to 608       608/608
(100 %)
0 diff
(100 %id)
BU689772 Human Lung Epithelial cells, lung .d 2614 to 3390 794 to 19   AAA   776/776
(100 %)
3 diff
(99.7 %id)
CN308127 embryonic stem cells, DMSO-treated H9 cellline .d 2636 to 2965 330 to 1     Submitted on the opposite strand 330/330
(100 %)
0 diff
(100 %id)
CB151545 cervix, Uterine .d 2644 to 3305 1 to 662       662/662
(100 %)
0 diff
(100 %id)
CB151337 cervix, Uterine .d 2653 to 3208 1 to 556       556/556
(100 %)
0 diff
(100 %id)
BU622945 cell lines, Chondrosarcoma .d 2662 to 3390 747 to 19   AAA   729/729
(100 %)
0 diff
(100 %id)
CB130832 Liver .d 2664 to 3269 1 to 606       606/606
(100 %)
0 diff
(100 %id)
AU139465 placenta .d 2675 to 3519 2 to 823   capped   775/822
(94 %)
19 diff
(97.7 %id)
BM710841 eye, fetal eyes .d 2701 to 3038 1 to 338       338/338
(100 %)
0 diff
(100 %id)
CR982668 T-Lymphocytes .d 2705 to 3543 1 to 839       839/842
(99 %)
3 diff
(99.7 %id)
DN916920   .d 2758 to 3356 1 to 599       599/599
(100 %)
0 diff
(100 %id)
BU929023 brain, glioblastoma .d 2785 to 3691 1 to 900       900/900
(100 %)
41 diff
(95.5 %id)
AI969513 malignant melanoma, metastatic to lymphnode, skin .d 2786 to 3393 608 to 1       608/608
(100 %)
0 diff
(100 %id)
DA512759 brain .d 2796 to 3583 2 to 795   capped   794/824
(96 %)
9 diff
(99.0 %id)
BM477028 lymph, lymphoma, cell line .d 2842 to 3932 1 to 1109       1109/1111
(99 %)
51 diff
(95.5 %id)
BU193796 melanotic melanoma, skin .d 2842 to 3785 1 to 945       945/948
(99 %)
22 diff
(97.7 %id)
BU160149 melanotic melanoma, skin .d 2849 to 3782 1 to 935       935/935
(100 %)
8 diff
(99.2 %id)
AU151881   .d 2857 to 3416 559 to 1       559/563
(99 %)
9 diff
(98.5 %id)
BQ215388 melanotic melanoma, skin .d 2859 to 3543 1 to 693       693/805
(86 %)
12 diff
(98.6 %id)
AA384710 thyroid gland .d 2893 to 3134 1 to 242       242/242
(100 %)
0 diff
(100 %id)
D53920   .d 2912 to 3148 1 to 237       237/237
(100 %)
0 diff
(100 %id)
BM480295 duodenal adenocarcinoma, cell line, small intestine .d 2914 to 3888 1 to 986       986/988
(99 %)
29 diff
(97.1 %id)
BM807283 duodenal adenocarcinoma, cell line, small intestine .d 2918 to 3850 1 to 938       938/1007
(93 %)
7 diff
(99.4 %id)
BM837640 Ascites, stomach .d 2921 to 3558 1 to 638       638/638
(100 %)
0 diff
(100 %id)
BM817867 stomach .d 2924 to 3564 1 to 641       641/641
(100 %)
0 diff
(100 %id)
BE708051 head_neck .d 2978 to 3130 153 to 1       153/153
(100 %)
0 diff
(100 %id)
AU184926 skin .d 2997 to 3316 320 to 1       320/320
(100 %)
0 diff
(100 %id)
AI580344 Kidney .d 3019 to 3390 372 to 1       372/372
(100 %)
0 diff
(100 %id)
AA649704 alveolar rhabdomyosarcoma .d 3061 to 3390 1 to 330   AAA   330/330
(100 %)
0 diff
(100 %id)
T35621 lung .d 3177 to 3465 1 to 289       289/289
(100 %)
0 diff
(100 %id)
AA120984 lung, lung carcinoma .d 3221 to 3451 1 to 231       231/231
(100 %)
0 diff
(100 %id)
T40101 Liver .d 3297 to 3453 1 to 157       157/157
(100 %)
0 diff
(100 %id)
AU144054 whole embryo, mainly head .d 3481 to 4057 574 to 1   tiling clone,   574/574
(100 %)
6 diff
(99.0 %id)
BM667681 eye, fetal eyes .d 3522 to 4057 554 to 19   AAA   536/536
(100 %)
4 diff
(99.3 %id)
AI499105 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .d 3544 to 4000 457 to 1       457/457
(100 %)
0 diff
(100 %id)
AW020178 cochlea, ear .d 3551 to 4001 1 to 451       451/451
(100 %)
5 diff
(98.9 %id)
AL039549 testis .d 3556 to 4027 500 to 27   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 474/474
(100 %)
4 diff
(99.2 %id)
AU158037 placenta .d 3593 to 4027 435 to 1       435/435
(100 %)
3 diff
(99.4 %id)
BM704092 eye, Retina Foveal and Macular .d 3601 to 4053 10 to 461   AAA   452/461
(98 %)
7 diff
(98.5 %id)
AI523275 aorta .d 3628 to 4053 426 to 1       426/426
(100 %)
0 diff
(100 %id)
DB296335 cerebellum .d 3682 to 4053 373 to 1       373/373
(100 %)
5 diff
(98.7 %id)
H88034 cochlea, ear .d 3686 to 4021 1 to 336       336/336
(100 %)
0 diff
(100 %id)
AW241689 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .d 3689 to 4057 380 to 12   AAA   369/369
(100 %)
0 diff
(100 %id)
AU149916   .d 3711 to 4000 295 to 6       290/295
(98 %)
0 diff
(100 %id)
AA605043 adrenal adenoma, adrenal gland .d 3713 to 4027 335 to 21   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 315/315
(100 %)
0 diff
(100 %id)
D53156.
matches multiple genes
  .d 3715 to 4052 338 to 1     also hits gene HEXDC 338/338
(100 %)
0 diff
(100 %id)
AA595659 lung, lung tumor .d 3722 to 4000 307 to 29   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 279/279
(100 %)
0 diff
(100 %id)
AI434701 lymph node, lymphoma, follicular mixed small and largecell .d 3722 to 4057 336 to 1       336/336
(100 %)
0 diff
(100 %id)
AI269313 Kidney .d 3726 to 4053 328 to 1       328/328
(100 %)
0 diff
(100 %id)
AA491524 Ewing's sarcoma .d 3737 to 3947 1 to 211       211/211
(100 %)
0 diff
(100 %id)
AI832745 colon .d 3738 to 4053 316 to 1       316/316
(100 %)
0 diff
(100 %id)
AV726103 hypothalamus .d 3739 to 4057 1 to 319   AAA   319/319
(100 %)
0 diff
(100 %id)
T33478 brain .d 3759 to 4053 295 to 1       295/295
(100 %)
0 diff
(100 %id)
AI434021 lymph node, lymphoma, follicular mixed small and largecell .d 3769 to 4027 259 to 1       259/259
(100 %)
0 diff
(100 %id)
CB118272 Liver .d 3777 to 4057 1 to 281   AAA   281/281
(100 %)
0 diff
(100 %id)
BM769251 stomach .d 3797 to 4050 1 to 254       254/254
(100 %)
0 diff
(100 %id)
AI701251 adenocarcinoma, Pancreas .d 3817 to 4057 268 to 28   AAA   241/241
(100 %)
0 diff
(100 %id)
BQ434968 melanotic melanoma, skin .d 3820 to 4017 1 to 198   AAA   198/198
(100 %)
0 diff
(100 %id)
EC530982 Prostate .d 3838 to 3936 1 to 99       99/99
(100 %)
0 diff
(100 %id)
AA862773 pooled germ cell tumors .d 3868 to 4027 160 to 1       160/160
(100 %)
0 diff
(100 %id)
AA776595 schizophrenic brain S-11 frontal lobe .d 3875 to 4029 155 to 1       155/155
(100 %)
0 diff
(100 %id)
DA224659 brain .e 1 to 610 2 to 613   tiling clone, capped   612/612
(100 %)
5 diff
(99.2 %id)
BX510145   .e 18 to 689 1 to 674       674/674
(100 %)
6 diff
(99.2 %id)
NM_018834.4   .e 18 to 3922 1 to 3905 exact RefSeq, AAA   3905/3905
(100 %)
0 diff
(100 %id)
DA202325 brain .e 29 to 595 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA486982 brain .e 32 to 594 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA790726 brain .e 32 to 580 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
BM788608 stomach .e 32 to 690 1 to 660       660/660
(100 %)
4 diff
(99.4 %id)
DA230767 brain .e 33 to 580 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
BP336748 coronary artery .e 33 to 625 1 to 593       593/593
(100 %)
0 diff
(100 %id)
DB063121 testis .e 33 to 591 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA487987 brain .e 36 to 595 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
BM453007 leiomyosarcoma, uterus .e 43 to 977 1 to 943       943/1038
(90 %)
23 diff
(97.8 %id)
DA214392 brain .e 46 to 591 2 to 547   capped   546/546
(100 %)
0 diff
(100 %id)
BX474649   .e 57 to 577 1 to 522       522/522
(100 %)
5 diff
(99.1 %id)
DA230865 brain .e 59 to 615 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
BX474969   .e 61 to 687 1 to 626       626/626
(100 %)
2 diff
(99.7 %id)
AU107972   .e 62 to 111 1 to 50       50/50
(100 %)
0 diff
(100 %id)
DA401303 thalamus .e 63 to 623 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA222465 brain .e 69 to 724 2 to 657   capped   656/656
(100 %)
1 diff
(99.9 %id)
DA222600 brain .e 69 to 705 2 to 639   capped   638/638
(100 %)
5 diff
(99.3 %id)
DA233957 brain .e 69 to 652 2 to 585   capped   584/584
(100 %)
0 diff
(100 %id)
DA331082 hippocampus .e 69 to 625 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DA460009 tongue, tumor tissue .e 69 to 633 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA856764 placenta .e 69 to 620 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DA861396 placenta .e 69 to 643 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DB062050 testis .e 69 to 597 2 to 530   capped   529/529
(100 %)
0 diff
(100 %id)
DB064589 testis .e 69 to 618 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DB095154 testis .e 69 to 645 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DB096962 testis .e 69 to 663 2 to 596   capped   595/595
(100 %)
0 diff
(100 %id)
DB110223 thymus .e 69 to 639 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
BX507812   .e 70 to 797 1 to 730       730/730
(100 %)
5 diff
(99.4 %id)
BX505665   .e 70 to 693 1 to 624       624/624
(100 %)
1 diff
(99.9 %id)
BX474919   .e 70 to 721 1 to 652       652/652
(100 %)
5 diff
(99.3 %id)
BX424835 placenta .e 73 to 1232 1 to 1143       1143/1143
(100 %)
20 diff
(98.3 %id)
DA332609 hippocampus .e 75 to 655 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
DA805846 brain .e 75 to 614 2 to 541   capped   540/540
(100 %)
0 diff
(100 %id)
BM467685 leiomyosarcoma, uterus .e 76 to 1075 33 to 1031       999/1076
(92 %)
30 diff
(97.3 %id)
DA228427 brain .e 81 to 640 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
BU521704 leiomyosarcoma, uterus .e 81 to 894 1 to 821       821/902
(91 %)
25 diff
(97.3 %id)
CD687512 normal nasopharynx .e 82 to 767 35 to 719       685/719
(95 %)
12 diff
(98.4 %id)
BX501168 Liver .e 82 to 746 1 to 667       667/667
(100 %)
4 diff
(99.5 %id)
DA216904 brain .e 86 to 628 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
DA222723 brain .e 86 to 622 2 to 538   capped   537/537
(100 %)
0 diff
(100 %id)
AL709078 human skeletal muscle .e 87 to 812 1 to 727       727/727
(100 %)
2 diff
(99.8 %id)
BP228559 brain .e 87 to 669 1 to 583       583/583
(100 %)
0 diff
(100 %id)
DA800708 brain .e 87 to 564 2 to 479   capped   478/478
(100 %)
0 diff
(100 %id)
DA230563 brain .e 88 to 741 2 to 656   capped   655/655
(100 %)
3 diff
(99.6 %id)
DA239032 brain .e 88 to 676 2 to 590   capped   589/589
(100 %)
0 diff
(100 %id)
DA242797 brain .e 88 to 646 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA339555 hippocampus .e 88 to 666 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
DA398852 thalamus .e 88 to 661 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DA850730 placenta .e 88 to 619 2 to 533   capped   532/532
(100 %)
0 diff
(100 %id)
DA855153 placenta .e 88 to 681 2 to 595   capped   594/594
(100 %)
0 diff
(100 %id)
DA857053 placenta .e 88 to 647 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DB070179 testis .e 88 to 620 2 to 534   capped   533/533
(100 %)
0 diff
(100 %id)
BU170304 eye, retinoblastoma .e 90 to 902 12 to 832       821/887
(92 %)
16 diff
(98.2 %id)
DA256192 caudate nucleus .e 91 to 662 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA435431 tongue, tumor tissue .e 91 to 662 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
BQ430001 melanotic melanoma, skin .e 92 to 975 1 to 882       882/882
(100 %)
9 diff
(99.0 %id)
CB994484 placenta, pre-eclamptic placenta .e 92 to 795 28 to 740       713/827
(86 %)
23 diff
(97.3 %id)
BX537365 human retina .e 93 to 4841 1 to 4749 D590R K591* tiling clone, available from DKFZ, AAA   4749/4749
(100 %)
6 diff
(99.9 %id)
AL712060 human skeletal muscle .e 93 to 751 1 to 659       659/659
(100 %)
3 diff
(99.6 %id)
BQ945535 carcinoma, cell line, Prostate .e 94 to 927 1 to 843       843/899
(93 %)
16 diff
(98.3 %id)
DA326640 hippocampus .e 95 to 639 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
AL701023 human skeletal muscle .e 95 to 773 1 to 680       680/680
(100 %)
3 diff
(99.6 %id)
AL700113 human skeletal muscle .e 95 to 812 1 to 719       719/719
(100 %)
7 diff
(99.1 %id)
AL700206 human skeletal muscle .e 95 to 785 1 to 693       693/696
(99 %)
6 diff
(99.2 %id)
BX497331 Liver .e 95 to 741 1 to 648       648/648
(100 %)
5 diff
(99.3 %id)
DA190703 amygdala .e 96 to 680 2 to 586   capped   585/585
(100 %)
0 diff
(100 %id)
DA248607 brain .e 96 to 681 2 to 587   capped   586/586
(100 %)
0 diff
(100 %id)
DB229580 trachea .e 96 to 686 2 to 592   capped   591/591
(100 %)
0 diff
(100 %id)
DA184603 amygdala .e 97 to 639 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
DA356353 subthalamic nucleus .e 97 to 581 2 to 486   capped   485/485
(100 %)
0 diff
(100 %id)
AL701156 human skeletal muscle .e 97 to 654 1 to 558       558/558
(100 %)
0 diff
(100 %id)
DA222508 brain .e 99 to 752 2 to 658   capped   657/664
(98 %)
6 diff
(99.1 %id)
DA392730 thalamus .e 100 to 691 2 to 593   capped   592/592
(100 %)
0 diff
(100 %id)
CN483090 eye .e 100 to 738 1 to 638       638/638
(100 %)
1 diff
(99.9 %id)
CB043930 colon, juvenile granulosa tumor .e 100 to 741 24 to 665       642/665
(96 %)
6 diff
(99.1 %id)
AL598532   .e 101 to 860 1 to 763       763/766
(99 %)
8 diff
(99.0 %id)
BM923863 pooled colon, kidney, stomach .e 101 to 1051 1 to 948       948/948
(100 %)
12 diff
(98.8 %id)
CN308120 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .e 102 to 736 1 to 636       636/636
(100 %)
3 diff
(99.6 %id)
CN308140 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .e 102 to 740 1 to 642       642/642
(100 %)
6 diff
(99.1 %id)
DA225305 brain .e 103 to 680 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
DA409767 thalamus .e 103 to 772 2 to 673   capped   672/672
(100 %)
5 diff
(99.3 %id)
DA880533   .e 103 to 808 2 to 711   capped   710/710
(100 %)
8 diff
(98.9 %id)
DB230983 trachea .e 103 to 687 2 to 586   capped   585/585
(100 %)
0 diff
(100 %id)
AL699997 human skeletal muscle .e 104 to 766 1 to 663       663/663
(100 %)
4 diff
(99.4 %id)
DA291515 hippocampus .e 106 to 672 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
CN308177 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .e 107 to 873 1 to 769       769/769
(100 %)
6 diff
(99.3 %id)
BM480292 eye, retinoblastoma .e 107 to 1091 1 to 984       984/1118
(88 %)
23 diff
(98.0 %id)
BM460719 leiomyosarcoma, uterus .e 108 to 890 1 to 788       788/1041
(75 %)
18 diff
(98.3 %id)
CN308142 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .e 109 to 783 1 to 675       675/675
(100 %)
4 diff
(99.5 %id)
BQ061423 lymph, lymphoma, cell line .e 109 to 894 1 to 792       792/1042
(76 %)
19 diff
(98.2 %id)
BI258103 cervical carcinoma cell line, cervix .e 113 to 976 1 to 879       879/925
(95 %)
31 diff
(96.7 %id)
DB200193 trachea .e 120 to 705 2 to 587   capped   586/586
(100 %)
0 diff
(100 %id)
CD653066 Embryonic Stem cells .e 121 to 900 1 to 780       780/844
(92 %)
11 diff
(98.7 %id)
CD654432 Embryonic Stem cells .e 121 to 889 1 to 767       767/839
(91 %)
12 diff
(98.6 %id)
BY795684 eye .e 129 to 768 1 to 641       641/641
(100 %)
1 diff
(99.9 %id)
CN308193 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .e 131 to 808 1 to 679       679/679
(100 %)
3 diff
(99.6 %id)
BG392380 embryonal carcinoma, cell line, testis .e 131 to 868 1 to 735       735/739
(99 %)
12 diff
(98.4 %id)
DA399860 thalamus .e 134 to 702 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DA802101 brain .e 135 to 684 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
CN308171 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .e 147 to 860 9 to 722   tiling clone,   714/722
(98 %)
0 diff
(100 %id)
DB216004 trachea .e 148 to 699 7 to 558   capped   552/557
(99 %)
0 diff
(100 %id)
AU133217   .e 524 to 1381 2 to 859   capped   858/858
(100 %)
4 diff
(99.6 %id)
DA141877 alzheimer cortex .e 2892 to 3431 2 to 541   capped   540/540
(100 %)
0 diff
(100 %id)
BM449542 melanotic melanoma, skin .e 2935 to 3872 1 to 946       946/1084
(87 %)
26 diff
(97.7 %id)
BQ897631 dorsal root ganglia .e 2942 to 3865 1 to 931       931/931
(100 %)
24 diff
(97.5 %id)
BM699882 eye, lens .e 2950 to 3610 1 to 661   fully sequenced,   661/661
(100 %)
0 diff
(100 %id)
BM464275 leiomyosarcoma, uterus .e 2961 to 3894 1 to 935       935/944
(99 %)
17 diff
(98.2 %id)
AL046786 testis .e 2970 to 3531 1 to 562       562/562
(100 %)
0 diff
(100 %id)
BM688356 eye, human retina .e 2978 to 3532 10 to 564   fully sequenced,   555/564
(98 %)
5 diff
(99.2 %id)
CB124489 Liver .e 3032 to 3653 1 to 622       622/622
(100 %)
0 diff
(100 %id)
BP422867 small intestine .e 3043 to 3540 1 to 498     Submitted on the opposite strand 498/498
(100 %)
0 diff
(100 %id)
AU135457 placenta .e 3047 to 3602 2 to 560   fully sequenced, capped   559/559
(100 %)
0 diff
(100 %id)
BG493721 lung, mucoepidermoid carcinoma .e 3056 to 3871 1 to 819       819/884
(92 %)
32 diff
(96.4 %id)
BQ434429 melanotic melanoma, skin .e 3075 to 3879 819 to 7     Submitted on the opposite strand 813/832
(97 %)
0 diff
(100 %id)
BM798730 stomach .e 3080 to 3571 1 to 492       492/492
(100 %)
0 diff
(100 %id)
CA841246 Pancreas, Purified pancreatic islet .e 3091 to 3701 1 to 611       611/611
(100 %)
0 diff
(100 %id)
TI_149302104   .e 3126 to 3922 865 to 83   AAA   783/943
(83 %)
17 diff
(98.2 %id)
TI_151716217   .e 3133 to 3883 879 to 128       752/880
(85 %)
0 diff
(100 %id)
BG290560 bladder, transitional cell papilloma, cell line .e 3137 to 3925 1 to 790   AAA   790/790
(100 %)
21 diff
(97.4 %id)
BG290851 bladder, transitional cell papilloma, cell line .e 3144 to 3826 15 to 697       683/997
(68 %)
16 diff
(98.4 %id)
CN308129 embryonic stem cells, cell lines H1, H7, andH9 .e 3147 to 3797 1 to 651       651/660
(98 %)
2 diff
(99.7 %id)
CD638294 pooled .e 3167 to 3846 1 to 680       680/681
(99 %)
7 diff
(99.0 %id)
N99089 multiple sclerosis lesions .e 3174 to 3534 1 to 351   fully sequenced,   351/351
(100 %)
1 diff
(99.8 %id)
BM689816 eye, Retina Foveal and Macular .e 3175 to 3493 3 to 321   fully sequenced,   319/321
(99 %)
5 diff
(98.5 %id)
BQ435796 testis .e 3179 to 3893 1 to 716       716/720
(99 %)
8 diff
(98.9 %id)
BQ001485 lung, Metastatic Chondrosarcoma .e 3182 to 3918 756 to 19   AAA   738/738
(100 %)
3 diff
(99.6 %id)
CN308176 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .e 3184 to 3882 709 to 11   AAA Submitted on the opposite strand 699/699
(100 %)
1 diff
(99.9 %id)
CD511528 Blood vessels - aorta, basilar and artery .e 3187 to 3912 1 to 732   AAA   732/745
(98 %)
10 diff
(98.7 %id)
TI_149282619   .e 3188 to 3892 783 to 79   AAA   705/706
(99 %)
1 diff
(99.9 %id)
AL117541 testis .e 3192 to 3892 1 to 700   available from DKFZ, AAA   700/700
(100 %)
3 diff
(99.6 %id)
BQ003495 Chondrosarcoma, Left Pelvis .e 3193 to 3882 707 to 19   AAA   689/689
(100 %)
4 diff
(99.5 %id)
BP197420 adrenal gland .e 3208 to 3789 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BM983909 lung, Primary Lung Epithelial Cells .e 3208 to 3892 703 to 19   AAA   685/685
(100 %)
1 diff
(99.9 %id)
TI_149278208   .e 3215 to 3887 774 to 103   AAA   672/672
(100 %)
9 diff
(98.7 %id)
TI_154160555   .e 3222 to 3918 805 to 110   AAA Submitted on the opposite strand 696/699
(99 %)
16 diff
(97.8 %id)
CB043929 colon, juvenile granulosa tumor .e 3227 to 3865 655 to 17   AAA   639/639
(100 %)
0 diff
(100 %id)
AA327692   .e 3247 to 3503 1 to 257       257/257
(100 %)
0 diff
(100 %id)
BG500000 adenocarcinoma, Prostate .e 3303 to 3922 1 to 619   AAA   619/646
(95 %)
3 diff
(99.6 %id)
BM700027 eye, lens .e 3305 to 3788 1 to 485       485/485
(100 %)
2 diff
(99.6 %id)
BX474650   .e 3382 to 3892 530 to 20   AAA   511/511
(100 %)
2 diff
(99.7 %id)
AU154588   .e 3396 to 3927 529 to 1       529/532
(99 %)
6 diff
(98.9 %id)
BM661849 eye, Retina Foveal and Macular .e 3463 to 3892 448 to 19   fully sequenced, AAA   430/430
(100 %)
1 diff
(99.8 %id)
BU726748 eye, human retina .e 3502 to 3892 409 to 19   fully sequenced, AAA   391/391
(100 %)
1 diff
(99.8 %id)
N58953 multiple sclerosis lesions .e 3504 to 3892 390 to 1   fully sequenced,   390/390
(100 %)
2 diff
(99.5 %id)
N23558 melanocyte .e 3534 to 4024 1 to 493       493/493
(100 %)
4 diff
(99.2 %id)
AU156056 placenta .e 3572 to 3882 311 to 1   fully sequenced,   311/311
(100 %)
0 diff
(100 %id)
BU737620 eye, lens .e 3580 to 3882 321 to 19   fully sequenced, AAA   303/303
(100 %)
1 diff
(99.7 %id)
BU187803 eye, retinoblastoma .e 3586 to 4454 1 to 871       871/874
(99 %)
5 diff
(99.5 %id)
F07241 brain, total brain .e 3631 to 3969 1 to 339       339/339
(100 %)
1 diff
(99.8 %id)
DB556532 hypothalamus .e 3701 to 4146 1 to 447   tiling clone, Submitted on the opposite strand 447/447
(100 %)
2 diff
(99.6 %id)
AI269307 Kidney .e 3740 to 4107 380 to 13   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 368/368
(100 %)
0 diff
(100 %id)
AA365082 pineal body .e 3902 to 4115 1 to 214       214/214
(100 %)
0 diff
(100 %id)
AA985495 Kidney, kidney tumor .e 3925 to 4142 218 to 1       218/218
(100 %)
0 diff
(100 %id)
BM698348 eye, fetal eyes .e 4010 to 4455 1 to 446       446/446
(100 %)
6 diff
(98.7 %id)
BM793636 Ascites, stomach .e 4063 to 4717 1 to 655   tiling clone,   655/655
(100 %)
0 diff
(100 %id)
TI_149289338   .e 4200 to 4843 744 to 102   AAA   643/644
(99 %)
12 diff
(98.2 %id)
BF574778 muscle (skeletal) .e 4255 to 4964 1 to 695       695/888
(78 %)
21 diff
(97.7 %id)
AA365563 pineal body .e 4327 to 4508 1 to 182       182/182
(100 %)
0 diff
(100 %id)
AW953977   .e 4328 to 4848 1 to 521   AAA   521/521
(100 %)
0 diff
(100 %id)
AW467425 myeloid cells, 18 pooled CML cases, BCR/ABLrearrangement positive, includes both chronic phase andmyeloid blast crisis, whole blood .e 4357 to 4847 491 to 1       491/491
(100 %)
0 diff
(100 %id)
BX642434 human skeletal muscle .e 4363 to 4841 497 to 19   AAA   479/479
(100 %)
0 diff
(100 %id)
BM970901 lung .e 4367 to 4843 493 to 17   AAA   477/477
(100 %)
0 diff
(100 %id)
H98833 melanocyte .e 4418 to 4843 426 to 1       426/426
(100 %)
2 diff
(99.6 %id)
AA234153 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .e 4447 to 4806 1 to 357   fully sequenced,   357/357
(100 %)
8 diff
(97.8 %id)
AA947747 pooled germ cell tumors .e 4500 to 4843 360 to 17   AAA   344/344
(100 %)
0 diff
(100 %id)
BU736104 eye, fetal eyes .e 4548 to 4848 320 to 19   AAA   302/302
(100 %)
2 diff
(99.4 %id)
AI583002 adenocarcinoma, Pancreas .e 4569 to 4841 296 to 24   AAA   273/273
(100 %)
0 diff
(100 %id)
BF000287 colon, colon tumor, RER+ .e 4601 to 5153 554 to 1   tiling clone,   554/554
(100 %)
2 diff
(99.7 %id)
BM829103 Ascites, stomach .e 4610 to 4845 255 to 20     Submitted on the opposite strand 236/255
(92 %)
0 diff
(100 %id)
AA233906 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .e 4776 to 5160 385 to 1   tiling clone, fully sequenced,   385/385
(100 %)
1 diff
(99.8 %id)
Z40351 brain, total brain .e 4868 to 5159 290 to 1       290/290
(100 %)
2 diff
(99.4 %id)
CR597092 HeLa cells Cot 25-normalized .f 1 to 3040 1 to 3040 exact tiling clone,   3040/3040
(100 %)
0 diff
(100 %id)
DA392128 thalamus .g 1 to 599 2 to 597   tiling clone, capped   596/596
(100 %)
2 diff
(99.7 %id)
DA110295 cerebellum .g 8 to 556 2 to 550   capped   549/549
(100 %)
1 diff
(99.9 %id)
AK057645 trachea .g 36 to 2595 1 to 2562   available from FLJ,   2562/2562
(100 %)
3 diff
(99.9 %id)
DB194904 trachea .g 37 to 550 2 to 515   capped   514/514
(100 %)
0 diff
(100 %id)
BX643168   .g 77 to 587 9 to 520       512/520
(98 %)
6 diff
(98.9 %id)
BX499693 Liver .g 87 to 759 1 to 673       673/673
(100 %)
5 diff
(99.3 %id)
CD652028 Embryonic Stem cells .g 110 to 871 42 to 795       754/811
(92 %)
23 diff
(97.2 %id)
AL700243 human skeletal muscle .g 117 to 766 1 to 650       650/653
(99 %)
10 diff
(98.5 %id)
DA395009 thalamus .g 180 to 757 2 to 578   capped   577/577
(100 %)
1 diff
(99.9 %id)
BX501250 Liver .g 216 to 967 1 to 751       751/751
(100 %)
3 diff
(99.7 %id)
BX500967 Liver .g 310 to 859 1 to 551       551/551
(100 %)
5 diff
(99.1 %id)
BX507436 Liver .g 314 to 853 1 to 541       541/541
(100 %)
3 diff
(99.5 %id)
BX641308   .g 366 to 903 1 to 538   tiling clone,   538/538
(100 %)
1 diff
(99.9 %id)
DA099099 cerebellum .g 374 to 919 2 to 548   capped   547/547
(100 %)
1 diff
(99.9 %id)
DA232495 brain .g 639 to 1195 2 to 558   capped   557/557
(100 %)
3 diff
(99.5 %id)
AL696858 human skeletal muscle .g 667 to 1158 1 to 492       492/492
(100 %)
0 diff
(100 %id)
AL600076   .g 727 to 1316 1 to 590   tiling clone,   590/590
(100 %)
0 diff
(100 %id)
DA361510 subthalamic nucleus .g 757 to 1314 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
AV747000 Pituitary .g 874 to 1258 35 to 414       380/415
(91 %)
6 diff
(98.6 %id)
CN267536 embryonic stem cells, cell lines H1, H7, andH9 .g 875 to 1139 1 to 264       264/264
(100 %)
1 diff
(99.7 %id)
DB079878 testis .g 894 to 1472 2 to 581   capped   580/580
(100 %)
2 diff
(99.7 %id)
DB144834 thymus .g 1030 to 1578 2 to 552   capped   551/551
(100 %)
2 diff
(99.7 %id)
DB233084 trachea .g 1075 to 1672 2 to 600   capped   599/599
(100 %)
1 diff
(99.9 %id)
AK309195 thalamus .g 1158 to 3407 1 to 2250 exact tiling clone,   2250/2250
(100 %)
0 diff
(100 %id)
DA395426 thalamus .g 1159 to 1731 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA416984 thalamus .g 1160 to 1707 2 to 550   capped   549/549
(100 %)
3 diff
(99.5 %id)
BP382982 ilea mucosa .g 1406 to 2149 1 to 751       751/852
(88 %)
13 diff
(98.5 %id)
DA416093 thalamus .g 1426 to 1982 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
DB122301 thymus .g 1430 to 1996 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DB347998 trachea .g 2046 to 2595 551 to 1       551/551
(100 %)
1 diff
(99.9 %id)
DA509278 brain .g 2136 to 2702 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
CN308157 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .g 2156 to 2708 1 to 553       553/553
(100 %)
1 diff
(99.9 %id)
BG032762 breast, mammary adenocarcinoma, cell line .g 2183 to 2924 1 to 756       758/1033
(73 %)
65 diff
(93.8 %id)
CD106328 brain, Pituitary .g 2216 to 3094 1 to 884       884/884
(100 %)
8 diff
(99.1 %id)
BG959634 colon .g 2306 to 2835 554 to 21       534/555
(96 %)
17 diff
(97.0 %id)
BQ880332 dorsal root ganglia .g 2307 to 3107 1 to 810       810/977
(82 %)
16 diff
(98.4 %id)
BP259044 heart .g 2374 to 2944 1 to 569       569/569
(100 %)
13 diff
(97.8 %id)
BF930639 nervous_tumor .g 2395 to 2774 6 to 386       381/386
(98 %)
10 diff
(97.5 %id)
BF382259 brain, primitive neuroectoderm .g 2406 to 2983 1 to 574       574/582
(98 %)
17 diff
(97.1 %id)
BU902300 leiomyosarcoma, uterus .g 2412 to 3471 45 to 1113   tiling clone,   1069/1194
(89 %)
48 diff
(96.0 %id)
BM806696 melanotic melanoma, skin .g 2414 to 3306 1 to 892       892/1070
(83 %)
29 diff
(97.3 %id)
AA361136   .g 2538 to 2767 1 to 231       231/231
(100 %)
1 diff
(99.6 %id)
AA361499   .g 2538 to 2756 1 to 220       220/220
(100 %)
1 diff
(99.6 %id)
AW963156   .g 2546 to 3045 1 to 503       503/503
(100 %)
11 diff
(97.9 %id)
AU142384   .g 2604 to 3392 2 to 789   capped   788/790
(99 %)
5 diff
(99.4 %id)
CB149903 Liver .g 2607 to 3128 1 to 522       522/522
(100 %)
6 diff
(98.9 %id)
TI_149283761   .g 2642 to 3315 752 to 79   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 674/675
(99 %)
0 diff
(100 %id)
BM984177 lung, Primary Lung Epithelial Cells .g 2662 to 3315 672 to 19   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 654/654
(100 %)
0 diff
(100 %id)
BE969916 Pancreas .g 2676 to 3321 1 to 638       638/841
(75 %)
17 diff
(98.0 %id)
BF812543 colon_ins .g 2714 to 3347 1 to 634       634/634
(100 %)
18 diff
(97.2 %id)
CF142436 CNCAP(3)T-225 cell line, Prostate .g 2723 to 3185 1 to 461       461/461
(100 %)
7 diff
(98.5 %id)
TI_154173377   .g 2730 to 3353 78 to 691       614/615
(99 %)
29 diff
(95.3 %id)
AU159723   .g 3647 to 4198 554 to 1   tiling clone,   554/561
(98 %)
16 diff
(97.2 %id)
AK316420 testis .h 1 to 2517 2 to 2518 exact tiling clone,   2518/2518
(100 %)
0 diff
(100 %id)
DC401768 testis .h 1 to 551 2 to 552       552/552
(100 %)
0 diff
(100 %id)
BG572023 placenta .h 13 to 666 1 to 655       655/655
(100 %)
3 diff
(99.6 %id)
AK299399 tongue .h 24 to 2002 1 to 1979 D402Y     1979/1979
(100 %)
5 diff
(99.8 %id)
BI547161 brain, hippocampus .h 25 to 796 1 to 772       772/778
(99 %)
21 diff
(97.4 %id)
DC337736 substantia nigra .h 28 to 606 1 to 579       579/579
(100 %)
0 diff
(100 %id)
TI_44167842   .h 30 to 796 127 to 893       767/899
(85 %)
24 diff
(97.4 %id)
DC373206 tongue .h 30 to 606 1 to 578       578/578
(100 %)
1 diff
(99.9 %id)
DC367920   .h 39 to 591 1 to 555       555/555
(100 %)
2 diff
(99.7 %id)
BG722241 testis .h 57 to 703 1 to 650       650/651
(99 %)
14 diff
(97.9 %id)
DC331069 hippocampus .h 98 to 680 1 to 584       584/584
(100 %)
1 diff
(99.9 %id)
DC316217 amygdala .h 170 to 731 1 to 562       562/562
(100 %)
0 diff
(100 %id)
DC316018 amygdala .h 195 to 764 1 to 570       570/570
(100 %)
0 diff
(100 %id)
DC328036 corpus callosum .h 195 to 770 1 to 576       576/576
(100 %)
0 diff
(100 %id)
DC331865 hippocampus .h 195 to 786 1 to 592       592/592
(100 %)
1 diff
(99.9 %id)
DC371314   .h 195 to 758 1 to 564       564/564
(100 %)
1 diff
(99.9 %id)
DC313870 amygdala .h 197 to 757 1 to 562       562/567
(99 %)
2 diff
(99.7 %id)
DC324026 brain .h 197 to 743 1 to 547       547/547
(100 %)
2 diff
(99.7 %id)
DC331800 hippocampus .h 197 to 768 1 to 572       572/572
(100 %)
0 diff
(100 %id)
DC353924 brain .h 197 to 804 1 to 608       608/608
(100 %)
0 diff
(100 %id)
BP200116 amygdala .h 200 to 781 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
DC331709 hippocampus .h 200 to 789 1 to 590       590/590
(100 %)
0 diff
(100 %id)
BP214007 cerebrum .h 200 to 780 1 to 581       581/581
(100 %)
0 diff
(100 %id)
DC349938 brain .h 200 to 762 1 to 563       563/563
(100 %)
0 diff
(100 %id)
DC354178 brain .h 200 to 764 1 to 565       565/565
(100 %)
0 diff
(100 %id)
DC376041 brain .h 200 to 759 1 to 560       560/560
(100 %)
0 diff
(100 %id)
DC411170 kidney, tumor tissue .h 200 to 758 1 to 559       559/559
(100 %)
2 diff
(99.7 %id)
DC328540 corpus callosum .h 202 to 767 1 to 566       566/566
(100 %)
1 diff
(99.9 %id)
DC353106 brain .h 202 to 764 1 to 563       563/563
(100 %)
0 diff
(100 %id)
DC375613 brain .h 203 to 798 1 to 596       596/596
(100 %)
3 diff
(99.5 %id)
DC319824 brain .h 204 to 769 1 to 566       566/566
(100 %)
0 diff
(100 %id)
DC353848 brain .h 204 to 777 1 to 574       574/574
(100 %)
0 diff
(100 %id)
BP310034 brain .h 204 to 780 1 to 577       577/582
(99 %)
2 diff
(99.7 %id)
BP362681 thalamus .h 204 to 785 1 to 582       582/582
(100 %)
0 diff
(100 %id)
AL702657 human skeletal muscle .h 205 to 790 1 to 586       586/586
(100 %)
0 diff
(100 %id)
DC375319 brain .h 206 to 785 1 to 580       580/580
(100 %)
0 diff
(100 %id)
DC315376 amygdala .h 208 to 737 38 to 567       530/567
(93 %)
6 diff
(99.0 %id)
CD694759 normal nasopharynx .h 210 to 812 16 to 618       603/618
(97 %)
10 diff
(98.4 %id)
BG505163 embryonal carcinoma, testis .h 212 to 921 1 to 705       705/705
(100 %)
11 diff
(98.5 %id)
DC313336 amygdala .h 215 to 790 1 to 576       576/576
(100 %)
0 diff
(100 %id)
DC317042 amygdala .h 215 to 758 1 to 544       544/544
(100 %)
0 diff
(100 %id)
DC319876 brain .h 215 to 802 1 to 588       588/588
(100 %)
1 diff
(99.9 %id)
BP217398 caudate nucleus .h 215 to 800 1 to 586       586/587
(99 %)
9 diff
(98.5 %id)
DC345552 tongue, tumor tissue .h 215 to 770 1 to 556       556/556
(100 %)
0 diff
(100 %id)
DC345631 tongue, tumor tissue .h 215 to 790 1 to 576       576/576
(100 %)
0 diff
(100 %id)
DC350387 brain .h 215 to 781 1 to 567       567/567
(100 %)
2 diff
(99.7 %id)
DC350411 brain .h 215 to 791 1 to 577       577/577
(100 %)
1 diff
(99.9 %id)
DC350926 brain .h 215 to 789 1 to 575       575/575
(100 %)
0 diff
(100 %id)
BG722823 testis .h 215 to 908 8 to 706       699/871
(80 %)
18 diff
(98.0 %id)
DC371133   .h 215 to 793 1 to 580       580/580
(100 %)
1 diff
(99.9 %id)
DC374624 brain .h 215 to 786 1 to 572       572/572
(100 %)
0 diff
(100 %id)
DC391220 Spleen .h 215 to 770 1 to 556       556/556
(100 %)
1 diff
(99.9 %id)
DB472125 hippocampus .h 216 to 709 1 to 493       493/493
(100 %)
1 diff
(99.8 %id)
DC375195 brain .h 216 to 806 1 to 591       591/591
(100 %)
0 diff
(100 %id)
BP198792 brain .h 217 to 803 1 to 587       587/587
(100 %)
0 diff
(100 %id)
DC315013 amygdala .h 217 to 709 1 to 493       493/493
(100 %)
0 diff
(100 %id)
DC320161 brain .h 217 to 781 1 to 565       565/565
(100 %)
0 diff
(100 %id)
DC331349 hippocampus .h 217 to 789 1 to 574       574/574
(100 %)
1 diff
(99.9 %id)
BP219241 caudate nucleus .h 217 to 798 1 to 582       582/582
(100 %)
6 diff
(99.0 %id)
AL713241 human skeletal muscle .h 217 to 785 1 to 569       569/569
(100 %)
2 diff
(99.7 %id)
DT215743 brain .h 217 to 926 1 to 710       710/710
(100 %)
1 diff
(99.9 %id)
DC317622 amygdala .h 218 to 767 1 to 550       550/550
(100 %)
1 diff
(99.9 %id)
DC327593 caudate nucleus .h 218 to 753 1 to 536       536/536
(100 %)
0 diff
(100 %id)
AW297463   .h 223 to 672 1 to 450     Submitted on the opposite strand 450/450
(100 %)
0 diff
(100 %id)
BF207817 bladder, carcinoma, cell line .h 223 to 939 1 to 704       704/717
(98 %)
17 diff
(97.7 %id)
BG432251 Kidney .h 223 to 975 1 to 749       749/771
(97 %)
14 diff
(98.2 %id)
DC325046 brain .h 224 to 810 1 to 587       587/587
(100 %)
0 diff
(100 %id)
AA326164 brain, cerebellum .h 226 to 761 1 to 554       554/554
(100 %)
22 diff
(96.1 %id)
CD643748 Embryonic Stem cells .h 226 to 975 12 to 761       750/822
(91 %)
22 diff
(97.4 %id)
DB482945 hippocampus .h 231 to 726 1 to 496       496/496
(100 %)
0 diff
(100 %id)
CN308145 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .h 238 to 1013 1 to 780       780/780
(100 %)
8 diff
(99.0 %id)
CN308178 embryonic stem cells, cell lines H1, H7, andH9 .h 246 to 466 1 to 221       221/222
(99 %)
1 diff
(99.6 %id)
BX496887 Liver .i 1 to 616 1 to 616   tiling clone,   616/616
(100 %)
0 diff
(100 %id)
CR936615 amygdala .i 227 to 6366 1 to 6133 exact tiling clone, AAA   6133/6133
(100 %)
4 diff
(100.0 %id)
AL707966 human skeletal muscle .i 409 to 939 1 to 526       526/526
(100 %)
3 diff
(99.5 %id)
BP391531 pancreatic islet .i 487 to 747 259 to 1       259/259
(100 %)
3 diff
(98.9 %id)
BX492825   .i 744 to 1219 23 to 498       476/498
(95 %)
6 diff
(98.8 %id)
BX492819   .i 749 to 1213 29 to 493   tiling clone,   465/493
(94 %)
6 diff
(98.8 %id)
AW852213 colon .i 821 to 1248 430 to 8   tiling clone,   423/430
(98 %)
0 diff
(100 %id)
BX495773 Liver .i 1307 to 1833 1 to 528       528/528
(100 %)
1 diff
(99.9 %id)
AL699051 human skeletal muscle .i 1499 to 2023 1 to 522       522/522
(100 %)
4 diff
(99.3 %id)
BX494027   .i 1503 to 2012 1 to 510       510/510
(100 %)
3 diff
(99.5 %id)
BG000597 placenta_normal .i 1823 to 2118 311 to 17       295/311
(94 %)
0 diff
(100 %id)
DB063222 testis .i 2077 to 2642 2 to 568   capped   567/567
(100 %)
1 diff
(99.9 %id)
AK293952 cerebellum .j 1 to 2245 1 to 2245 V228A V457A tiling clone,   2245/2245
(100 %)
3 diff
(99.9 %id)
DC299387   .j 1 to 586 1 to 586       586/586
(100 %)
1 diff
(99.9 %id)
DC309343 cerebellum .j 1 to 572 1 to 572       572/572
(100 %)
1 diff
(99.9 %id)
DC331854 hippocampus .j 1 to 599 1 to 599       599/599
(100 %)
1 diff
(99.9 %id)
DC331856 hippocampus .j 1 to 606 1 to 606       606/606
(100 %)
1 diff
(99.9 %id)
DC305405 cerebellum .j 2 to 413 1 to 412       412/412
(100 %)
1 diff
(99.8 %id)
AJ224169   .j 30 to 404 1 to 375       375/375
(100 %)
2 diff
(99.5 %id)
DC411285 kidney, tumor tissue .k 1 to 575 1 to 575   tiling clone,   575/575
(100 %)
0 diff
(100 %id)
DB459240 testis .k 48 to 523 1 to 476       476/476
(100 %)
2 diff
(99.6 %id)
AW821022 stomach .k 549 to 944 403 to 2   tiling clone,   402/403
(99 %)
9 diff
(97.8 %id)
BF375716 stomach .k 606 to 950 345 to 1   tiling clone,   345/345
(100 %)
15 diff
(95.7 %id)
CB216767 normal endometrium, mid-secretory phase,cycle day 23, uterus .k 946 to 1587 1 to 642   tiling clone,   642/643
(99 %)
1 diff
(99.9 %id)
DC401586 testis .l 1 to 547 1 to 547   tiling clone,   547/547
(100 %)
0 diff
(100 %id)
DB095962 testis .l 87 to 646 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DC329181 corpus callosum .l 88 to 668 1 to 581       581/581
(100 %)
0 diff
(100 %id)
DC297178 cord Blood .l 94 to 660 1 to 567       567/567
(100 %)
0 diff
(100 %id)
DC299200   .l 130 to 689 1 to 562       562/562
(100 %)
2 diff
(99.7 %id)
DC316585 amygdala .l 130 to 674 1 to 545       545/545
(100 %)
0 diff
(100 %id)
DC378380   .l 130 to 697 1 to 568       568/568
(100 %)
0 diff
(100 %id)
BG771682 testis .l 131 to 871 1 to 740   tiling clone,   740/740
(100 %)
6 diff
(99.2 %id)
DC401710 testis .l 133 to 688 1 to 556       556/556
(100 %)
2 diff
(99.7 %id)
DC388527 small intestine .l 136 to 712 1 to 578       578/578
(100 %)
1 diff
(99.9 %id)
DC391193 Spleen .l 136 to 688 1 to 553       553/553
(100 %)
1 diff
(99.9 %id)
DC371904   .l 149 to 703 1 to 555       555/555
(100 %)
2 diff
(99.7 %id)
DC407159 thymus .l 149 to 718 1 to 569       569/569
(100 %)
1 diff
(99.9 %id)
BE888606 leiomyosarcoma, uterus .l 152 to 856 1 to 701       701/729
(96 %)
10 diff
(98.7 %id)
DC379130 pericardium .l 152 to 706 1 to 555       555/555
(100 %)
0 diff
(100 %id)
BU852828 testis .l 153 to 902 1 to 752       752/752
(100 %)
7 diff
(99.1 %id)
DC429201   .l 154 to 750 1 to 597       597/597
(100 %)
0 diff
(100 %id)
DC382833 Prostate .l 154 to 706 1 to 554       554/554
(100 %)
1 diff
(99.9 %id)
DC405916 thymus .l 154 to 711 1 to 558       558/558
(100 %)
0 diff
(100 %id)
DC314507 amygdala .l 156 to 691 1 to 536       536/536
(100 %)
0 diff
(100 %id)
DC354862   .l 156 to 716 1 to 561       561/561
(100 %)
2 diff
(99.7 %id)
DC409895 thymus .l 156 to 730 1 to 575       575/575
(100 %)
0 diff
(100 %id)
DC388785 small intestine .l 157 to 719 1 to 564       564/564
(100 %)
1 diff
(99.9 %id)
DC395172 testis .l 157 to 709 1 to 553       553/553
(100 %)
0 diff
(100 %id)
DC409208 thymus .l 157 to 726 1 to 571       571/571
(100 %)
1 diff
(99.9 %id)
DC388043 small intestine .l 164 to 721 1 to 558       558/558
(100 %)
1 diff
(99.9 %id)
DC408572 thymus .l 164 to 698 1 to 535       535/535
(100 %)
0 diff
(100 %id)
DC420029 uterus .l 164 to 723 1 to 560       560/560
(100 %)
0 diff
(100 %id)
DC420357 uterus .l 164 to 710 1 to 547       547/547
(100 %)
0 diff
(100 %id)
CN308139 embryonic stem cells, cell lines H1, H7, andH9 .l 171 to 614 138 to 581       444/581
(76 %)
7 diff
(98.8 %id)
BQ948605 sciatic nerve .l 173 to 1042 1 to 875   tiling clone,   875/917
(95 %)
13 diff
(98.6 %id)
BE280960 choriocarcinoma, placenta .l 182 to 625 1 to 444       444/447
(99 %)
0 diff
(100 %id)
BE568710 bladder, carcinoma, cell line .l 183 to 730 1 to 554       554/579
(95 %)
9 diff
(98.5 %id)
DA020314   .l 196 to 766 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA820032   .l 197 to 787 2 to 592   capped   591/591
(100 %)
0 diff
(100 %id)
DB249896 uterus .l 197 to 753 2 to 558   capped   557/557
(100 %)
1 diff
(99.9 %id)
DB497178 hypothalamus .m 1 to 472 8 to 479   tiling clone,   479/479
(100 %)
6 diff
(98.8 %id)
BI458413 brain, hypothalamus .m 11 to 792 1 to 785   tiling clone,   785/806
(97 %)
24 diff
(97.1 %id)
DB490501 hypothalamus .m 16 to 410 1 to 396       396/396
(100 %)
3 diff
(99.3 %id)
DC401379 testis .m 32 to 581 1 to 550       550/550
(100 %)
1 diff
(99.9 %id)
BP193581 brain .m 71 to 651 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
DC376155 brain .m 87 to 713 1 to 627   tiling clone,   627/627
(100 %)
0 diff
(100 %id)
BM147940 leukopheresis .m 89 to 594 1 to 506       506/507
(99 %)
5 diff
(99.1 %id)
DC387277   .m 102 to 666 1 to 565       565/565
(100 %)
1 diff
(99.9 %id)
BF089016 head_neck .n 1 to 216 227 to 15   tiling clone,   213/227
(93 %)
0 diff
(100 %id)
BG235926 blood, lymphocyte .n 15 to 376 362 to 1   tiling clone,   362/362
(100 %)
0 diff
(100 %id)
CV328556 marrow .n 231 to 623 409 to 16   tiling clone, Submitted on the opposite strand 394/409
(96 %)
3 diff
(99.3 %id)
F07286 brain, total brain .n 565 to 844 1 to 280   tiling clone,   280/280
(100 %)
0 diff
(100 %id)
H11175 whole brain .n 566 to 1000 1 to 441       441/441
(100 %)
14 diff
(96.9 %id)
BG432899 Kidney .n 653 to 1239 1 to 585       585/818
(71 %)
8 diff
(99.1 %id)
CN275364 embryonic stem cells, DMSO-treated H9 cellline .n 776 to 1217 1 to 442       442/442
(100 %)
4 diff
(99.1 %id)
BG924844 cartilage .n 792 to 1350 90 to 648   tiling clone,   559/576
(97 %)
6 diff
(99.0 %id)
CA952767 Pancreas, Purified pancreatic islet .n 922 to 1310 1 to 389   tiling clone,   389/389
(100 %)
7 diff
(98.3 %id)
CA952544 Pancreas, Purified pancreatic islet .n 2398 to 2933 537 to 2   tiling clone,   536/537
(99 %)
0 diff
(100 %id)
H11087 whole brain .n 2570 to 2927 376 to 17   AAA   360/403
(89 %)
3 diff
(99.3 %id)
F04913 brain, total brain .n 2694 to 2927 234 to 1       234/234
(100 %)
1 diff
(99.6 %id)
CX788115 human embryonic stem cells .o 1 to 799 1 to 799 exact tiling clone,   799/799
(100 %)
0 diff
(100 %id)
DA513526 brain .o 49 to 605 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
BG714232 brain, hypothalamus .p -8 to 662 1 to 672   tiling clone,   672/672
(100 %)
15 diff
(97.8 %id)
DB487191 hypothalamus .p 1 to 440 5 to 444   tiling clone,   444/444
(100 %)
3 diff
(99.4 %id)
DB490242 hypothalamus .p 1 to 443 5 to 444   tiling clone,   444/444
(100 %)
16 diff
(96.4 %id)
CN308190 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .p 74 to 550 1 to 487       487/487
(100 %)
6 diff
(98.8 %id)
DC376473 brain .q 1 to 552 2 to 553 A14R A15R E16R V17* tiling clone,   553/557
(99 %)
5 diff
(99.2 %id)
DB490449 hypothalamus .q 12 to 418 1 to 407   tiling clone,   407/407
(100 %)
1 diff
(99.8 %id)
BP220675 colon .r 1 to 561 4 to 566   tiling clone,   566/566
(100 %)
4 diff
(99.3 %id)
DC321203 brain .r 274 to 807 1 to 534       534/542
(98 %)
0 diff
(100 %id)
DC353040 brain .r 296 to 860 1 to 565       565/565
(100 %)
0 diff
(100 %id)
DA488618 brain .r 333 to 905 2 to 576 G41W N42K G43W N44K L45P ... tiling clone, capped   575/575
(100 %)
9 diff
(98.5 %id)
DC319514 brain .s 1 to 588 2 to 589 exact tiling clone,   589/589
(100 %)
0 diff
(100 %id)
DC313746 amygdala .s 4 to 576 1 to 573       573/574
(99 %)
1 diff
(99.9 %id)
BP236995 coronary artery .t 1 to 573 3 to 573 K120X E128G T129D A133X K159N ... tiling clone,   573/582
(98 %)
11 diff
(98.2 %id)
BQ305282 breast .t 6 to 132 156 to 30       127/156
(81 %)
0 diff
(100 %id)
DC331913 hippocampus .u 1 to 571 1 to 571 exact tiling clone,   571/571
(100 %)
0 diff
(100 %id)
DB467752 hippocampus .va 1 to 423 1 to 423 T31K L76V tiling clone,   423/423
(100 %)
2 diff
(99.6 %id)
CD723113 eye, lacrimal gland .vb 1 to 578 1 to 578 exact tiling clone,   578/578
(100 %)
0 diff
(100 %id)
BG432047 Kidney .vb 153 to 959 1 to 819   tiling clone,   819/819
(100 %)
19 diff
(97.7 %id)
BU185043 large cell carcinoma, lung .vb 289 to 1101 1 to 820   tiling clone,   820/903
(90 %)
26 diff
(97.2 %id)
AL603042 human skeletal muscle .vb 323 to 920 1 to 599       599/599
(100 %)
2 diff
(99.7 %id)
DA465578   .vb 328 to 898 2 to 572   tiling clone, capped   571/571
(100 %)
0 diff
(100 %id)
DC329030 corpus callosum .vc 1 to 580 1 to 581   tiling clone,   581/582
(99 %)
3 diff
(99.5 %id)
DC412653 kidney, tumor tissue .vc 314 to 660 1 to 347       347/347
(100 %)
0 diff
(100 %id)
DA746761   .vc 519 to 1093 2 to 576   tiling clone, capped   575/575
(100 %)
0 diff
(100 %id)
DA793498 brain .vd 1 to 445 4 to 451 Y118L G119W K120G I121K tiling clone, capped   450/452
(99 %)
5 diff
(98.9 %id)
BI462121 testis .ve 1 to 701 1 to 706 S2G L72P tiling clone,   706/708
(99 %)
14 diff
(98.1 %id)
BE818048 breast_normal .vf 1 to 354 18 to 367 Y2S D5T R6D L7*     350/383
(91 %)
6 diff
(98.5 %id)
BE818113 breast_normal .vf 1 to 354 373 to 20 Y2S tiling clone,   354/381
(92 %)
1 diff
(99.8 %id)
BM090613 Fetal Pancreas (4 Pooled Donors, 18 - 20weeks, Stratagene #738023) .vf 12 to 572 10 to 570       561/570
(98 %)
7 diff
(98.8 %id)
BE818043 breast_normal .vf 19 to 354 1 to 334       334/350
(95 %)
14 diff
(96.0 %id)
BM090838 Fetal Pancreas (4 Pooled Donors, 18 - 20weeks, Stratagene #738023) .vf 132 to 719 588 to 1       588/588
(100 %)
1 diff
(99.9 %id)
AI249501 lymph node, lymphoma, follicular mixed small and largecell .vf 138 to 665 529 to 1       529/529
(100 %)
15 diff
(97.2 %id)
DA410415 thalamus .vf 180 to 735 2 to 558   capped   557/557
(100 %)
1 diff
(99.9 %id)
DA410483 thalamus .vf 180 to 734 2 to 556   tiling clone, capped   555/555
(100 %)
0 diff
(100 %id)
AL708739 human skeletal muscle .vg-u 1 to 503 18 to 520 C4V C10L S11L V12C A13C ... tiling clone,   503/520
(96 %)
6 diff
(98.9 %id)
DB238096 trachea .vg-u 215 to 786 2 to 574   capped   573/573
(100 %)
1 diff
(99.9 %id)
DA022675   .vg-u 321 to 878 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
DA732883   .vg-u 328 to 1021 2 to 698   capped   697/776
(89 %)
5 diff
(99.4 %id)
CN281317 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .vg-u 347 to 1093 1 to 748   tiling clone,   748/748
(100 %)
4 diff
(99.5 %id)
BX478189   .vg-u 549 to 1149 1 to 602   tiling clone,   602/602
(100 %)
3 diff
(99.6 %id)
BI045749 prostate_normal .vg-u 1792 to 2216 428 to 3   tiling clone,   426/433
(98 %)
0 diff
(100 %id)
BQ431508 eye, retinoblastoma .vg-u 1972 to 2831 12 to 884   AAA   873/913
(95 %)
22 diff
(97.6 %id)
BI860635 breast, mammary adenocarcinoma, cell line .vg-u 2058 to 2859 1 to 804       804/806
(99 %)
11 diff
(98.7 %id)
TI_57189519   .vg-u 2058 to 2859 53 to 856       804/806
(99 %)
11 diff
(98.7 %id)
BI860623 breast, mammary adenocarcinoma, cell line .vg-u 2075 to 2816 1 to 742   tiling clone,   742/742
(100 %)
1 diff
(99.9 %id)
TI_57189507   .vg-u 2075 to 2816 51 to 792       742/742
(100 %)
1 diff
(99.9 %id)
BF215591 brain, glioblastoma .vg-u 2091 to 2671 1 to 581       581/907
(64 %)
22 diff
(97.6 %id)
M61982   .vg-u 2116 to 2459 345 to 1       345/345
(100 %)
2 diff
(99.5 %id)
AA491766 Kidney .vg-u 2246 to 2445 1 to 200       200/200
(100 %)
0 diff
(100 %id)
BG283790 adenocarcinoma, cell line, Prostate .vg-u 2364 to 3041 1 to 683       683/684
(99 %)
16 diff
(97.7 %id)
BM992027 Bone, Subchondral Bone .vg-u 2371 to 3022 670 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base) 652/652
(100 %)
0 diff
(100 %id)
AI052668 liver and spleen .vg-u 2413 to 2855 443 to 1       443/443
(100 %)
0 diff
(100 %id)
CN361005 embryonic stem cells, cell lines H1, H7, andH9 .vg-u 2426 to 3129 1 to 704       704/704
(100 %)
4 diff
(99.5 %id)
AI925264 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .vg-u 2445 to 2855 411 to 1       411/411
(100 %)
1 diff
(99.8 %id)
AI926583 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .vg-u 2453 to 2872 420 to 1       420/420
(100 %)
10 diff
(97.7 %id)
CN361004 embryonic stem cells, DMSO-treated H9 cellline .vg-u 2550 to 3122 1 to 573   tiling clone,   573/573
(100 %)
2 diff
(99.7 %id)
DB364545   .vg-u 2563 to 3022 460 to 2       459/460
(99 %)
0 diff
(100 %id)
AW969890   .vg-u 2689 to 3035 424 to 76     Submitted on the opposite strand 349/425
(82 %)
0 diff
(100 %id)
AI580201 colon, moderately-differentiated adenocarcinoma .vg-u 2696 to 3023 328 to 1       328/328
(100 %)
2 diff
(99.4 %id)
CN361006 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .vg-u 2741 to 3316 13 to 589   tiling clone, AAA Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base) 577/589
(97 %)
6 diff
(99.0 %id)
BF361254 ovary .vg-u 3015 to 3175 166 to 5       162/202
(80 %)
0 diff
(100 %id)
CN308122 embryonic stem cells, cell lines H1, H7, andH9 .vh 1 to 627 1 to 627   tiling clone,   627/627
(100 %)
4 diff
(99.4 %id)
CN308123 embryonic stem cells, cell lines H1, H7, andH9 .vh 1 to 644 1 to 644 exact tiling clone,   644/644
(100 %)
2 diff
(99.7 %id)
CN308180 embryonic stem cells, cell lines H1, H7, andH9 .vi 1 to 751 1 to 751 exact tiling clone,   751/751
(100 %)
2 diff
(99.8 %id)
DB106566 thymus .vj 1 to 376 2 to 377 I54X tiling clone, capped   376/376
(100 %)
0 diff
(100 %id)
DA373895 thalamus .vk 1 to 562 2 to 563 exact tiling clone, capped   562/562
(100 %)
2 diff
(99.7 %id)
DA807290 brain .vk 5 to 550 2 to 548 E66* capped   547/547
(100 %)
4 diff
(99.3 %id)
DA799198 brain .vk 16 to 552 2 to 539 G19W P20S G22R K23E H24T ... capped   538/538
(100 %)
1 diff
(99.9 %id)
DA564531 heart .vk 18 to 587 2 to 574 R33Q R34A E35G I36D L37F ... capped   573/573
(100 %)
3 diff
(99.5 %id)
DA324625 hippocampus .vk 32 to 578 2 to 549   capped   548/548
(100 %)
5 diff
(99.1 %id)
DA513143 brain .vk 37 to 596 2 to 562   capped   561/561
(100 %)
4 diff
(99.3 %id)
DA399833 thalamus .vk 40 to 546 2 to 511   capped   510/512
(99 %)
7 diff
(98.7 %id)
DA323306 hippocampus .vk 43 to 499 2 to 460   capped   459/459
(100 %)
4 diff
(99.2 %id)
DA189158 amygdala .vk 56 to 637 2 to 584   tiling clone, capped   583/583
(100 %)
4 diff
(99.4 %id)
DA792691 brain .vk 60 to 679 2 to 622   capped   621/621
(100 %)
2 diff
(99.7 %id)
DA792721 brain .vk 60 to 685 2 to 628   tiling clone, capped   627/627
(100 %)
2 diff
(99.7 %id)
AJ224170   .vl 1 to 310 1 to 310 exact tiling clone,   310/310
(100 %)
0 diff
(100 %id)
DB198224 trachea .vm 1 to 578 2 to 579   capped   578/578
(100 %)
3 diff
(99.5 %id)
DA000617   .vm 2 to 521 2 to 521   tiling clone, capped   520/520
(100 %)
1 diff
(99.9 %id)
DA910689   .vm 2 to 555 2 to 555   capped   554/554
(100 %)
2 diff
(99.7 %id)
DB195974 trachea .vm 2 to 537 2 to 538   capped   537/537
(100 %)
2 diff
(99.7 %id)
DA645139   .vm 3 to 583 2 to 582   capped   581/581
(100 %)
3 diff
(99.5 %id)
DA816155   .vm 3 to 557 2 to 557   capped   556/556
(100 %)
3 diff
(99.5 %id)
BM468376 melanotic melanoma, skin .vm 17 to 841 1 to 829       829/977
(84 %)
22 diff
(97.8 %id)
BX400038   .vm 19 to 951 1 to 926       926/926
(100 %)
40 diff
(95.7 %id)
BG477460 melanotic melanoma, skin .vm 19 to 609 1 to 616       586/727
(80 %)
23 diff
(96.9 %id)
BM466534 eye, retinoblastoma .vm 19 to 593 13 to 590       578/1159
(49 %)
20 diff
(98.3 %id)
BG744080 blood, natural killer cells, cell line .vm 31 to 788 1 to 755       755/755
(100 %)
12 diff
(98.5 %id)
BE897291 melanotic melanoma, skin .vm 292 to 993 1 to 704   tiling clone,   704/878
(80 %)
8 diff
(99.1 %id)
CV575818 cornea, eye .vm 382 to 942 1 to 559       559/559
(100 %)
3 diff
(99.5 %id)
BF811475 colon_ins .vm 594 to 879 12 to 297       286/297
(96 %)
6 diff
(98.0 %id)
BM754107 stomach .vm 665 to 974 1 to 310       310/310
(100 %)
9 diff
(97.1 %id)
BM846900 myeloma .vm 677 to 1114 1 to 438       438/438
(100 %)
0 diff
(100 %id)
BM847527 myeloma .vm 677 to 1274 1 to 598   tiling clone,   598/598
(100 %)
0 diff
(100 %id)
CB140056 Liver .vm 788 to 1028 1 to 241       241/241
(100 %)
2 diff
(99.2 %id)
BG977499 colon_ins .vm 814 to 1100 286 to 1       286/293
(97 %)
20 diff
(93.2 %id)
AW861353 colon .vm 818 to 1135 1 to 319       319/329
(96 %)
19 diff
(94.3 %id)
BF817154 colon_ins .vm 821 to 1100 280 to 1     Submitted on the opposite strand 280/280
(100 %)
2 diff
(99.3 %id)
BF819010 colon_ins .vm 824 to 1100 277 to 1     Submitted on the opposite strand 277/278
(99 %)
1 diff
(99.7 %id)
BG977503 colon_ins .vm 825 to 1100 276 to 1       276/276
(100 %)
0 diff
(100 %id)
BF819020 colon_ins .vm 826 to 1106 314 to 34     Submitted on the opposite strand 281/316
(88 %)
0 diff
(100 %id)
AW861349 colon .vm 885 to 1104 221 to 3       219/221
(99 %)
0 diff
(100 %id)
BG744748 blood, natural killer cells, cell line .vm 1831 to 2143 320 to 1   tiling clone,   320/320
(100 %)
20 diff
(93.8 %id)
DB263378 uterus .vn-u 1 to 588 2 to 590 I29M N34D R43X Q44A I45D ... tiling clone, capped   589/589
(100 %)
12 diff
(98.0 %id)
BQ303818 breast .vn-u 298 to 543 1 to 246   tiling clone,   246/246
(100 %)
1 diff
(99.6 %id)
BG541620 lung .vn-u 471 to 1027 1 to 563   tiling clone,   563/563
(100 %)
11 diff
(98.1 %id)
AV693638 hepatocellular carcinoma .vn-u 504 to 866 1 to 356   tiling clone,   356/358
(99 %)
4 diff
(98.9 %id)
AV698971 hepatocellular carcinoma .vn-u 504 to 866 1 to 356       356/358
(99 %)
4 diff
(98.9 %id)
AV692221 hepatocellular carcinoma .vn-u 504 to 868 23 to 380       358/381
(93 %)
11 diff
(97.2 %id)
DA603625   .vo 1 to 800 2 to 801 exact tiling clone, capped   800/801
(99 %)
11 diff
(98.7 %id)
AW993682 breast_normal .vp-u 1 to 695 18 to 705 R5D Q6K R7G V8F L9G ... tiling clone,   688/750
(91 %)
19 diff
(97.5 %id)
BM313550 Pancreas, Purified pancreatic islet .vp-u 175 to 792 6 to 623       618/623
(99 %)
6 diff
(99.1 %id)
CK821998 Pancreas, Purified pancreatic islet .vp-u 222 to 793 1 to 572   tiling clone, Submitted on the opposite strand 572/572
(100 %)
0 diff
(100 %id)
DA889413   .vq 1 to 544 2 to 545 exact tiling clone, capped   544/544
(100 %)
2 diff
(99.7 %id)
DB261764 uterus .vq 1 to 584 2 to 585 exact capped   584/584
(100 %)
2 diff
(99.7 %id)
DA419436 cord Blood .vq 2 to 544 2 to 544 exact capped   543/543
(100 %)
3 diff
(99.5 %id)
BU171950 melanotic melanoma, skin .vq 16 to 777 1 to 769 exact tiling clone,   769/892
(86 %)
16 diff
(98.3 %id)
AJ224168   .vq 29 to 660 1 to 634 exact tiling clone,   634/666
(95 %)
8 diff
(98.8 %id)
DA215730 brain .vr 1 to 481 2 to 482   tiling clone, capped   481/481
(100 %)
0 diff
(100 %id)
DA234576 brain .vr 180 to 773 2 to 597 exact tiling clone, capped   596/596
(100 %)
4 diff
(99.4 %id)
NR_003141.2   .vs 1 to 731 2 to 732 exact RefSeq, tiling clone,   732/732
(100 %)
0 diff
(100 %id)
DB192707 ovary, tumor tissue .vs 1 to 568 2 to 569 exact capped   568/568
(100 %)
0 diff
(100 %id)
DA070458 cerebellum .vs 14 to 546 2 to 534 exact capped   533/533
(100 %)
0 diff
(100 %id)
DA381009 thalamus .vs 14 to 582 2 to 570 exact capped   569/569
(100 %)
0 diff
(100 %id)
DB129444 thymus .vs 14 to 556 2 to 543 exact capped   542/542
(100 %)
1 diff
(99.9 %id)
DB192736 ovary, tumor tissue .vs 16 to 588 2 to 576 Q2N capped   575/575
(100 %)
3 diff
(99.5 %id)
CN337311 embryonic stem cells, DMSO-treated H9 cellline .vs 32 to 384 1 to 353 exact     353/353
(100 %)
0 diff
(100 %id)
AJ224167   .vs 42 to 720 1 to 678 exact     678/681
(99 %)
4 diff
(99.5 %id)
CN337312 embryonic stem cells, DMSO-treated H9 cellline .vs 97 to 731 1 to 635       635/635
(100 %)
0 diff
(100 %id)
DA203569 brain .vs 180 to 762 2 to 583   tiling clone, capped   582/582
(100 %)
6 diff
(99.0 %id)
DA271663 caudate nucleus .vt 1 to 572 2 to 574 R29K tiling clone, capped   573/573
(100 %)
2 diff
(99.7 %id)
BX497905 Liver .vt 2 to 498 1 to 497 exact     497/497
(100 %)
2 diff
(99.6 %id)
AL700241 human skeletal muscle .vt 19 to 598 1 to 580 exact     580/580
(100 %)
3 diff
(99.5 %id)
BX498768 Liver .vt 23 to 572 1 to 550 T8X     550/550
(100 %)
2 diff
(99.7 %id)
DA346969 substantia nigra .vt 25 to 586 2 to 563 exact capped   562/562
(100 %)
0 diff
(100 %id)
DB102245 thymus .vt 26 to 579 2 to 555 exact capped   554/556
(99 %)
1 diff
(99.9 %id)
DA311967 hippocampus .vt 27 to 577 2 to 553 V9C W10M T11D I12N L13T ... capped   552/552
(100 %)
1 diff
(99.9 %id)
CN413524 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .vt 66 to 669 3 to 606 exact tiling clone,   604/606
(99 %)
0 diff
(100 %id)
DB069934 testis .vu 1 to 537 2 to 540 E43* tiling clone, capped   539/539
(100 %)
6 diff
(98.9 %id)
AJ224166   .vu 29 to 664 1 to 634 exact tiling clone,   634/785
(80 %)
4 diff
(99.5 %id)
DA379493 thalamus .vv-u 1 to 543 2 to 545 E14G tiling clone, capped   544/544
(100 %)
4 diff
(99.3 %id)
CN412460 embryonic stem cells, cell lines H1, H7, andH9 .vv-u 62 to 643 1 to 581 E14G tiling clone,   581/581
(100 %)
3 diff
(99.5 %id)
DA716755   .vw -8 to 504 2 to 515   capped   514/514
(100 %)
5 diff
(99.1 %id)
DA411882 thalamus .vw 1 to 550 7 to 557   capped   556/556
(100 %)
4 diff
(99.3 %id)
DA321557 hippocampus .vw 1 to 557 5 to 562   capped   561/561
(100 %)
3 diff
(99.5 %id)
DB072944 testis .vw 1 to 533 5 to 538   tiling clone, capped   537/537
(100 %)
1 diff
(99.9 %id)
DB257286 uterus .vw 1 to 569 5 to 572   capped   571/571
(100 %)
4 diff
(99.3 %id)
DA326078 hippocampus .vw 15 to 559 2 to 548   capped   547/547
(100 %)
5 diff
(99.1 %id)
AL040257 testis .vw 30 to 585 1 to 555       555/555
(100 %)
5 diff
(99.1 %id)
DA725221   .vw 30 to 604 2 to 578   capped   577/577
(100 %)
4 diff
(99.4 %id)
DA510205 brain .vw 34 to 598 2 to 567   capped   566/566
(100 %)
3 diff
(99.5 %id)
DA760298   .vw 34 to 580 2 to 549   capped   548/548
(100 %)
3 diff
(99.5 %id)
DA760304   .vw 34 to 580 2 to 549   capped   548/548
(100 %)
3 diff
(99.5 %id)
DA864933 placenta .vw 34 to 585 2 to 556   capped   555/555
(100 %)
3 diff
(99.5 %id)
DA228713 brain .vw 40 to 571 2 to 533   tiling clone, capped   532/532
(100 %)
0 diff
(100 %id)
DA754476   .vw 40 to 571 2 to 533   capped   532/532
(100 %)
4 diff
(99.3 %id)
DB077453 testis .vw 40 to 604 2 to 568   capped   567/567
(100 %)
4 diff
(99.3 %id)
DA316558 hippocampus .vw 53 to 605 2 to 555   capped   554/554
(100 %)
3 diff
(99.5 %id)
DA387607 thalamus .vw 53 to 632 2 to 582 exact tiling clone, capped   581/581
(100 %)
3 diff
(99.5 %id)
DB251081 uterus .vw 57 to 615 2 to 562   capped   561/561
(100 %)
7 diff
(98.8 %id)
DA001497   .vw 61 to 514 2 to 458   capped   457/471
(97 %)
8 diff
(98.4 %id)
DA236422 brain .vx 1 to 567 2 to 568   tiling clone, capped   567/567
(100 %)
0 diff
(100 %id)
BP354357   .vx 38 to 623 1 to 583   tiling clone,   583/583
(100 %)
3 diff
(99.5 %id)
DA740017   .vx 59 to 598 2 to 542   capped   541/541
(100 %)
4 diff
(99.3 %id)
DB461571 testis .vx 60 to 530 1 to 472       472/472
(100 %)
4 diff
(99.2 %id)
BG401657 Kidney .vy-u 1 to 616 1 to 612 exact tiling clone,   612/778
(78 %)
10 diff
(98.8 %id)
DA093041 cerebellum .vz 1 to 547 2 to 549 E30* capped   548/548
(100 %)
4 diff
(99.3 %id)
DA225614 brain .vz 1 to 563 2 to 564 exact capped   563/563
(100 %)
0 diff
(100 %id)
DA338525 hippocampus .vz 1 to 570 2 to 572 E30* capped   571/571
(100 %)
3 diff
(99.5 %id)
DB160429 thymus .vz 1 to 603 2 to 604 exact tiling clone, capped   603/603
(100 %)
0 diff
(100 %id)
DA326240 hippocampus .vz 2 to 518 2 to 520 E30* capped   519/519
(100 %)
4 diff
(99.3 %id)
DA662927   .vz 2 to 491 2 to 492 E30* capped   491/491
(100 %)
4 diff
(99.2 %id)
DB239721 trachea .wa 1 to 591 2 to 592 exact tiling clone, capped   591/591
(100 %)
2 diff
(99.7 %id)
DA214974 brain .wb 1 to 563 2 to 565   tiling clone, capped   564/564
(100 %)
3 diff
(99.5 %id)
DA335122 hippocampus .wb 8 to 591 2 to 586 exact tiling clone, capped   585/585
(100 %)
3 diff
(99.5 %id)
DB062179 testis .wb 12 to 535 12 to 537   tiling clone, capped   526/526
(100 %)
2 diff
(99.7 %id)
DB071168 testis .wb 41 to 574 2 to 536   capped   535/535
(100 %)
3 diff
(99.5 %id)
DA733074   .wc 1 to 589 2 to 592 exact tiling clone, capped   591/591
(100 %)
8 diff
(98.7 %id)
DA354444 substantia nigra .wd 1 to 579 2 to 580 exact tiling clone, capped   579/579
(100 %)
2 diff
(99.7 %id)
DC315042 amygdala .we 1 to 579 1 to 578 P28A tiling clone,   578/578
(100 %)
2 diff
(99.7 %id)
DA249877 brain .wf 1 to 576 2 to 578 exact tiling clone, capped   577/577
(100 %)
3 diff
(99.5 %id)
DA381682 thalamus .wg 1 to 570 2 to 572 exact tiling clone, capped   571/571
(100 %)
1 diff
(99.9 %id)
DA469244   .wh 1 to 569 2 to 570 exact tiling clone, capped   569/569
(100 %)
2 diff
(99.7 %id)
DA004928   .wi 1 to 564 2 to 565 exact tiling clone, capped   564/564
(100 %)
3 diff
(99.5 %id)
DA101068 cerebellum .wj 1 to 547 2 to 550 E43* tiling clone, capped   549/549
(100 %)
4 diff
(99.3 %id)
DB219528 trachea .wk 1 to 534 2 to 536 exact tiling clone, capped   535/535
(100 %)
5 diff
(99.1 %id)
DA711761   .wl 1 to 527 2 to 528 exact tiling clone, capped   527/527
(100 %)
1 diff
(99.9 %id)
AW295955   .wm-u 1 to 231 1 to 231 exact tiling clone, Submitted on the opposite strand 231/231
(100 %)
0 diff
(100 %id)
AW972078   .wm-u 32 to 438 1 to 407   tiling clone,   407/407
(100 %)
6 diff
(98.6 %id)
DW432702 Liver .wn-u 1 to 248 18 to 265 exact tiling clone,   249/265
(93 %)
6 diff
(97.8 %id)
562 other accessions, mainly redundant or of lesser quality, also belong to this gene but are not reported.
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o, .p, .q, .r, .s, .t, .u, .va, .vb, .vc, .vd, .ve, .vf, .vg-u, .vh, .vi, .vj, .vk, .vl, .vm, .vn-u, .vo, .vp-u, .vq, .vr, .vs, .vt, .vu, .vv-u, .vw, .vx, .vy-u, .vz, .wa, .wb, .wc, .wd, .we, .wf, .wg, .wh, .wi, .wj, .wk, .wl, .wm-u, .wn-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI