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Gene JAKMIP1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
110 supporting clones for gene JAKMIP1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_001099433.1   .a 1 to 3010 2 to 3011 exact RefSeq,   3011/3011
(100 %)
0 diff
(100 %id)
DA155551 amygdala .a 1 to 430 2 to 431   tiling clone, capped   430/430
(100 %)
1 diff
(99.8 %id)
BG705618 brain, hypothalamus .a 31 to 724 1 to 696   available from MGC,   696/696
(100 %)
6 diff
(99.2 %id)
AM412307 brain, retina .a 36 to 3010 1 to 2975 exact tiling clone,   2975/2975
(100 %)
0 diff
(100 %id)
DA169357 amygdala .a 37 to 544 2 to 509   capped   508/508
(100 %)
1 diff
(99.9 %id)
DA390248 thalamus .a 37 to 626 2 to 591   capped   590/590
(100 %)
0 diff
(100 %id)
DA393681 thalamus .a 37 to 608 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
DA492262 brain .a 37 to 532 2 to 497   capped   496/496
(100 %)
0 diff
(100 %id)
DA499186 brain .a 37 to 601 2 to 566   capped   565/565
(100 %)
1 diff
(99.9 %id)
DA686352   .a 37 to 507 2 to 472   capped   471/471
(100 %)
0 diff
(100 %id)
DA792199 brain .a 37 to 493 2 to 459   capped   458/458
(100 %)
1 diff
(99.8 %id)
DA303876 hippocampus .a 38 to 601 2 to 565   capped   564/564
(100 %)
1 diff
(99.9 %id)
DA492213 brain .a 38 to 592 2 to 557   capped   556/556
(100 %)
2 diff
(99.7 %id)
DA300648 hippocampus .a 39 to 610 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA157705 amygdala .a 40 to 603 2 to 565   capped   564/572
(98 %)
2 diff
(99.7 %id)
BP213247 cerebrum .a 42 to 607 1 to 566       566/566
(100 %)
8 diff
(98.6 %id)
DA060001 cerebellum .a 43 to 619 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DA089267 cerebellum .a 43 to 612 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
DA170998 amygdala .a 43 to 570 2 to 530   capped   529/529
(100 %)
1 diff
(99.9 %id)
DA297848 hippocampus .a 43 to 447 2 to 406   capped   405/405
(100 %)
1 diff
(99.8 %id)
DA310226 hippocampus .a 43 to 605 2 to 563   capped   562/562
(100 %)
2 diff
(99.7 %id)
DA517442 brain .a 43 to 493 2 to 452   capped   451/451
(100 %)
0 diff
(100 %id)
DA523355 brain .a 43 to 591 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
DA526131 brain .a 43 to 618 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DA774979 brain .a 43 to 563 2 to 522   capped   521/521
(100 %)
0 diff
(100 %id)
DA291244 hippocampus .a 47 to 463 2 to 418   capped   417/417
(100 %)
0 diff
(100 %id)
DA790887 brain .a 47 to 493 2 to 448   capped   447/455
(98 %)
1 diff
(99.8 %id)
DA170757 amygdala .a 51 to 627 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DA265151 caudate nucleus .a 51 to 609 2 to 560   capped   559/564
(99 %)
2 diff
(99.7 %id)
DA521818 brain .a 51 to 608 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DA151143 amygdala .a 53 to 538 2 to 488   capped   487/487
(100 %)
1 diff
(99.8 %id)
DA258606 caudate nucleus .a 53 to 579 2 to 528   capped   527/527
(100 %)
1 diff
(99.9 %id)
DB473247 hippocampus .a 56 to 520 1 to 465       465/465
(100 %)
1 diff
(99.8 %id)
DA201671 brain .a 57 to 643 2 to 589   capped   588/588
(100 %)
1 diff
(99.9 %id)
DA287626 corpus callosum .a 57 to 605 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
DA405243 thalamus .a 60 to 501 2 to 444   capped   443/447
(99 %)
2 diff
(99.6 %id)
DN994982 brain, whole brain .a 115 to 772 1 to 658       658/658
(100 %)
5 diff
(99.3 %id)
DA162392 amygdala .a 250 to 823 2 to 576   capped   575/575
(100 %)
2 diff
(99.7 %id)
DA794950 brain .a 257 to 778 2 to 523   capped   522/522
(100 %)
0 diff
(100 %id)
DA158157 amygdala .a 259 to 835 2 to 579   capped   578/578
(100 %)
1 diff
(99.9 %id)
DA164885 amygdala .a 270 to 778 2 to 510   capped   509/509
(100 %)
0 diff
(100 %id)
DA266843 caudate nucleus .a 270 to 816 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
DA200489 brain .a 272 to 845 2 to 576   capped   575/575
(100 %)
1 diff
(99.9 %id)
BI668982 brain, hypothalamus .a 275 to 1071 1 to 801       801/801
(100 %)
21 diff
(97.4 %id)
DA290719 hippocampus .a 303 to 886 2 to 585   capped   584/584
(100 %)
0 diff
(100 %id)
TI_44345677   .a 336 to 1071 141 to 880       740/880
(84 %)
21 diff
(97.7 %id)
TI_1948157443   .a 476 to 1320 131 to 974       844/1388
(60 %)
23 diff
(98.4 %id)
EL733969 mixed .a 486 to 1139 1 to 654       654/654
(100 %)
6 diff
(99.1 %id)
DB542016 hippocampus .a 1109 to 1581 9 to 481     Submitted on the opposite strand 473/481
(98 %)
6 diff
(98.8 %id)
BP195924 brain .a 1180 to 1764 1 to 583       583/583
(100 %)
3 diff
(99.5 %id)
AW954559   .a 1367 to 2081 1 to 715       715/717
(99 %)
2 diff
(99.8 %id)
W26213 eye, retina .a 1742 to 2192 8 to 459       452/555
(81 %)
8 diff
(98.6 %id)
W28578 eye, retina .a 1743 to 2260 540 to 22       517/569
(90 %)
8 diff
(98.6 %id)
Z44031 brain, total brain .a 1804 to 2134 1 to 331       331/331
(100 %)
0 diff
(100 %id)
BF888114 testis_normal .a 1865 to 2271 413 to 13     Submitted on the opposite strand 401/424
(94 %)
17 diff
(96.0 %id)
DT932682 pooled .a 1960 to 2283 324 to 1     Submitted on the opposite strand 324/324
(100 %)
1 diff
(99.7 %id)
TI_977333856   .a 1982 to 2367 11 to 395       385/733
(52 %)
8 diff
(99.0 %id)
DT932681 pooled .a 1983 to 2367 1 to 385       385/532
(72 %)
3 diff
(99.5 %id)
DV080574 pooled .a 2334 to 2775 442 to 1     Submitted on the opposite strand 442/442
(100 %)
1 diff
(99.8 %id)
TI_985974518   .a 2350 to 2823 1 to 475   fully sequenced,   475/475
(100 %)
5 diff
(99.0 %id)
DV080573 pooled .a 2367 to 2822 1 to 458       458/458
(100 %)
3 diff
(99.4 %id)
TI_985974519   .a 2483 to 2793 314 to 7   fully sequenced,   308/314
(98 %)
0 diff
(100 %id)
BF377859 testis_normal .a 2512 to 2651 142 to 3       140/172
(81 %)
1 diff
(99.5 %id)
AM412310 brain .b 1 to 2419 2 to 2420 exact tiling clone,   2420/2420
(100 %)
0 diff
(100 %id)
BX438167 neuroblastoma .b 26 to 840 16 to 837       822/837
(98 %)
21 diff
(97.5 %id)
BX333963 Neuroblastoma Cot 50-normalized .b 325 to 882 1 to 557       557/557
(100 %)
3 diff
(99.5 %id)
AK124718 brain .c 1 to 2370 2 to 2371 L222S V365A tiling clone, available from FLJ,   2371/2371
(100 %)
4 diff
(99.9 %id)
DA204052 brain .c 1 to 568 2 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
DA302567 hippocampus .c 63 to 663 2 to 603   capped   602/602
(100 %)
1 diff
(99.9 %id)
DA304056 hippocampus .c 73 to 632 2 to 561   capped   560/560
(100 %)
1 diff
(99.9 %id)
DA263410 caudate nucleus .c 95 to 667 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DB304115 brain .c 1828 to 2370 544 to 1       544/544
(100 %)
2 diff
(99.7 %id)
NM_144720.3   .d 1 to 2592 2 to 2593 exact RefSeq,   2593/2593
(100 %)
6 diff
(99.8 %id)
AK056126   .d 36 to 2582 1 to 2547 exact tiling clone, available from FLJ,   2547/2547
(100 %)
0 diff
(100 %id)
DA699320   .d 37 to 521 2 to 486   capped   485/488
(99 %)
1 diff
(99.8 %id)
AW163447 brain, frontal lobe .d 57 to 331 1 to 274       274/274
(100 %)
3 diff
(99.0 %id)
BC047075 Brain, hypothalamus .d 280 to 2582 1 to 2303 K163N available from MGC, AAA   2303/2303
(100 %)
6 diff
(99.8 %id)
TI_1948156969   .d 476 to 1435 129 to 1085       957/1357
(70 %)
30 diff
(97.8 %id)
TI_1948157123   .d 476 to 1439 128 to 1089       962/1352
(71 %)
17 diff
(98.8 %id)
TI_1948157280   .d 476 to 1439 124 to 1086       963/1356
(71 %)
21 diff
(98.5 %id)
AY382340   .d 486 to 2366 1 to 1881 exact     1881/1881
(100 %)
0 diff
(100 %id)
R17434 whole brain .d 1349 to 1836 1 to 492       492/494
(99 %)
9 diff
(98.2 %id)
TI_1948157124   .d 1587 to 2372 911 to 115       797/1284
(62 %)
32 diff
(97.6 %id)
TI_1948156970   .d 1588 to 2372 905 to 116       790/1242
(63 %)
15 diff
(98.8 %id)
TI_1948157281   .d 1591 to 2372 906 to 118       789/1261
(62 %)
16 diff
(98.8 %id)
H08055 whole brain .d 1805 to 2179 1 to 379       379/381
(99 %)
4 diff
(99.0 %id)
BM695429 eye, optic nerve .d 1861 to 2559 1 to 699   fully sequenced,   699/699
(100 %)
4 diff
(99.5 %id)
BU617552 Bone, Subchondral Bone .d 1902 to 2582 699 to 19   AAA   681/681
(100 %)
0 diff
(100 %id)
AW157571 brain, frontal lobe .d 1942 to 2586 653 to 7   tiling clone,   647/654
(98 %)
5 diff
(99.3 %id)
DB488368 hypothalamus .d 1947 to 2397 1 to 450       450/450
(100 %)
2 diff
(99.6 %id)
BQ639074 eye, retina .d 1988 to 2581 1 to 594       594/594
(100 %)
0 diff
(100 %id)
BM663074 eye, RPE and Choroid .d 1996 to 2582 604 to 18   AAA   587/587
(100 %)
1 diff
(99.9 %id)
DB323601   .d 2045 to 2582 538 to 1       538/540
(99 %)
1 diff
(99.9 %id)
BM689820 eye, Retina Foveal and Macular .d 2046 to 2564 1 to 519       519/525
(98 %)
6 diff
(98.9 %id)
BP429586   .d 2059 to 2471 1 to 413       413/413
(100 %)
3 diff
(99.3 %id)
TI_151697668   .d 2082 to 2585 595 to 92   AAA   504/504
(100 %)
0 diff
(100 %id)
BX092892 whole brain .d 2092 to 2585 507 to 15   AAA   493/493
(100 %)
1 diff
(99.8 %id)
BU739500 eye, optic nerve .d 2099 to 2585 503 to 17   fully sequenced, AAA   487/487
(100 %)
10 diff
(98.0 %id)
T03800   .d 2134 to 2585 455 to 1       455/459
(99 %)
10 diff
(97.9 %id)
R42780 whole brain .d 2167 to 2585 430 to 11   AAA   420/420
(100 %)
3 diff
(99.3 %id)
H08056 whole brain .d 2191 to 2582 411 to 11   AAA   401/411
(97 %)
11 diff
(97.4 %id)
BP395235 pancreatic islet .d 2193 to 2575 69 to 456     Submitted on the opposite strand 388/456
(85 %)
6 diff
(98.7 %id)
BM714077 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .d 2198 to 2585 1 to 388   fully sequenced, AAA   388/388
(100 %)
0 diff
(100 %id)
BM675261 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .d 2377 to 2585 224 to 16   fully sequenced, AAA   209/209
(100 %)
0 diff
(100 %id)
DB557765 hypothalamus .d 2431 to 2582 1 to 152     Submitted on the opposite strand 152/152
(100 %)
3 diff
(98.1 %id)
BC026343 Brain, hypothalamus .e 1 to 2602 2 to 2601 A124G A125R D126Q K127G V128Q ... tiling clone, available from MGC, AAA   2601/2601
(100 %)
5 diff
(99.9 %id)
AK295339 caudate nucleus .f 1 to 1832 4 to 1836 exact tiling clone,   1836/1836
(100 %)
2 diff
(99.9 %id)
DC327936 caudate nucleus .f 1 to 561 4 to 565       565/565
(100 %)
1 diff
(99.9 %id)
AL525796 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .g 1 to 954 1 to 953   tiling clone,   953/959
(99 %)
7 diff
(99.3 %id)
AL525757 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .g 1031 to 1990 959 to 1   tiling clone,   959/1028
(93 %)
5 diff
(99.6 %id)
DA785772 brain .h-u 1 to 569 2 to 570 exact tiling clone, capped   569/569
(100 %)
0 diff
(100 %id)
BP369916 testis .i 1 to 433 1 to 433 E46V H48Y D75A R77* tiling clone,   433/580
(74 %)
11 diff
(98.2 %id)
AK098536 testis Gene JAKMIP1, variant not shown       available from FLJ, Suspected internal deletion, this clone was ignored    
AK294356 amygdala Gene JAKMIP1, variant not shown         Suspected internal deletion, suspected internal deletion, this clone was ignored    
AK307983 brain Gene JAKMIP1, variant not shown         Suspected internal deletion, this clone was ignored    
AM412308 brain, retina Gene JAKMIP1, variant not shown         This clone was ignored    
AM412309 brain, retina Gene JAKMIP1, variant not shown         Suspected internal deletion, this clone was ignored    
DC316082 amygdala Gene JAKMIP1, variant not shown         Suspected internal deletion, this clone was ignored    
DA366394 subthalamic nucleus Gene JAKMIP1, variant not shown       capped This clone was ignored    
DA532573 brain Gene JAKMIP1, variant not shown       capped Suspected internal deletion, this clone was ignored    
BQ068675 brain, neuroblastoma, cell line Gene JAKMIP1, variant not shown         Suspected internal deletion, this clone was ignored    
W26715 eye, retina Gene JAKMIP1, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h-u, .i Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI