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Gene MAP1LC3ATABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
124 supporting clones for gene MAP1LC3A back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BP425180 small intestine .a 1 to 520 1 to 520 exact tiling clone, Submitted on the opposite strand 520/520
(100 %)
0 diff
(100 %id)
BM740344 Ascites, stomach .b 1 to 534 1 to 533 exact tiling clone,   533/533
(100 %)
1 diff
(99.9 %id)
H18312 brain .b 30 to 464 1 to 437   tiling clone,   437/442
(98 %)
7 diff
(98.5 %id)
NM_181509.1   .b 35 to 961 1 to 927 exact RefSeq, AAA   927/927
(100 %)
1 diff
(99.9 %id)
M79223   .b 188 to 524 26 to 363       338/363
(93 %)
9 diff
(97.6 %id)
BE712843 head_neck .b 190 to 591 17 to 418       402/418
(96 %)
15 diff
(96.5 %id)
H18170 brain .b 193 to 289 1 to 97       97/97
(100 %)
0 diff
(100 %id)
T31248 brain .b 214 to 541 1 to 335       335/335
(100 %)
7 diff
(98.0 %id)
AW962192   .b 215 to 740 1 to 526       526/633
(83 %)
4 diff
(99.4 %id)
AA115532 uterus .b 219 to 617 1 to 400       400/400
(100 %)
2 diff
(99.5 %id)
BX115760 uterus .b 220 to 731 1 to 513       513/513
(100 %)
2 diff
(99.7 %id)
BE881349 large cell carcinoma, undifferentiated, lung .b 234 to 777 1 to 543   tiling clone,   543/543
(100 %)
2 diff
(99.7 %id)
BE712850 head_neck .b 247 to 681 441 to 6       436/441
(98 %)
0 diff
(100 %id)
BX369794 Neuroblastoma Cot 25-normalized .b 252 to 738 1 to 485       485/487
(99 %)
5 diff
(99.0 %id)
BM688198 eye, human retina .b 283 to 734 12 to 464   tiling clone,   453/464
(97 %)
6 diff
(98.8 %id)
CK905944 insulinoma, Pancreas .b 284 to 466 1 to 187       187/195
(95 %)
11 diff
(94.4 %id)
BE712889 head_neck .b 285 to 681 402 to 6       397/402
(98 %)
2 diff
(99.6 %id)
BE712919 head_neck .b 286 to 681 417 to 21       397/417
(95 %)
3 diff
(99.3 %id)
BQ267664 insulinoma, Pancreas .b 290 to 646 7 to 363       357/363
(98 %)
13 diff
(96.5 %id)
BF886117 testis_normal .b 345 to 613 24 to 289       266/296
(89 %)
6 diff
(98.0 %id)
TI_153954387   .b 351 to 860 140 to 655   tiling clone,   516/944
(54 %)
41 diff
(95.7 %id)
BF762457 colon_est .b 378 to 619 244 to 4     Submitted on the opposite strand 241/365
(66 %)
0 diff
(100 %id)
AA115533 uterus .b 677 to 946 267 to 1   tiling clone,   267/267
(100 %)
10 diff
(96.3 %id)
BX333690 Neuroblastoma Cot 25-normalized .c 1 to 1020 1 to 1016   tiling clone,   1019/1100
(92 %)
18 diff
(98.4 %id)
EL954540 eyeball .c 547 to 1103 22 to 578       557/578
(96 %)
6 diff
(99.0 %id)
TI_45235901   .c 609 to 1018 61 to 472       412/824
(50 %)
13 diff
(98.5 %id)
BG708209 brain, hypothalamus .c 611 to 1303 7 to 687 exact     681/766
(88 %)
19 diff
(97.6 %id)
BP264881 muscle .c 615 to 1073 1 to 459       459/643
(71 %)
2 diff
(99.7 %id)
AI815709 brain, frontal lobe .c 615 to 1121 8 to 514   tiling clone,   507/514
(98 %)
6 diff
(98.9 %id)
BI517537 pooled colon, kidney, stomach .c 617 to 1018 1 to 405       405/757
(53 %)
8 diff
(99.0 %id)
AW304934 brain, three pooled meningiomas .c 765 to 1306 543 to 2       542/543
(99 %)
3 diff
(99.5 %id)
BU733686 eye, Retina Foveal and Macular .c 790 to 1308 530 to 19   AAA   512/519
(98 %)
15 diff
(97.2 %id)
TI_151770884   .c 803 to 1305 117 to 619   tiling clone, AAA   503/619
(81 %)
10 diff
(98.4 %id)
AI150509   .c 815 to 1303 492 to 5   tiling clone,   488/492
(99 %)
5 diff
(99.0 %id)
DA064906 cerebellum .d 1 to 575 2 to 576   tiling clone, capped   575/575
(100 %)
0 diff
(100 %id)
CR597014 Neuroblastoma Cot 25-normalized .d 4 to 1514 1 to 1511 exact tiling clone,   1511/1511
(100 %)
0 diff
(100 %id)
CB111122 Liver .d 593 to 1152 1 to 560 exact     560/560
(100 %)
1 diff
(99.9 %id)
BQ067721 brain .d 602 to 1199 20 to 619 exact     600/1281
(46 %)
21 diff
(98.4 %id)
BM919877 pooled pancreas and spleen .d 611 to 1355 1 to 747 exact     747/1074
(69 %)
4 diff
(99.7 %id)
TI_44345535   .d 611 to 1164 118 to 674 F108L L109P Y110L M111Y V112G ...     557/681
(81 %)
8 diff
(98.9 %id)
NM_032514.2   .d 611 to 1577 1 to 967 exact RefSeq, AAA   967/967
(100 %)
1 diff
(99.9 %id)
BI668829 brain, hypothalamus .d 613 to 1164 1 to 554 F108L L109P Y110L M111Y V112G ...     554/561
(98 %)
7 diff
(98.8 %id)
AF276658   .d 618 to 1577 8 to 967 exact AAA   960/967
(99 %)
7 diff
(99.3 %id)
BM925959 brain .d 624 to 1357 21 to 757 exact     737/1149
(64 %)
19 diff
(98.4 %id)
CD580498 brain .d 625 to 1325 1 to 701 exact     701/914
(76 %)
6 diff
(99.4 %id)
CN367671 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .d 627 to 1167 1 to 541 exact     541/542
(99 %)
3 diff
(99.5 %id)
BI522709 brain .d 633 to 1357 1 to 730 Q72A L73A N74E T76H Q77A ...     730/730
(100 %)
11 diff
(98.5 %id)
TI_44185577   .d 633 to 1357 36 to 765 Q72A L73A N74E T76H Q77A ...     730/765
(95 %)
13 diff
(98.4 %id)
AW163154 brain, frontal lobe .d 642 to 1140 1 to 500 I34D I35H E36R R37A Y38L ...     500/500
(100 %)
2 diff
(99.6 %id)
BI551310 brain, hippocampus .d 646 to 1376 1 to 768 P2C S3P D4Q R5T P6G ...     686/769
(89 %)
29 diff
(96.3 %id)
BI667032 brain, hypothalamus .d 646 to 1346 1 to 700 exact     700/700
(100 %)
8 diff
(98.9 %id)
TI_44170063   .d 647 to 1376 81 to 847 P2C S3P D4Q R5T P6G ...     704/848
(83 %)
22 diff
(97.5 %id)
TI_44342543   .d 647 to 1346 117 to 815 exact     699/815
(85 %)
7 diff
(99.2 %id)
BI601673 brain, hypothalamus .d 649 to 1439 1 to 793 R70A L71C Q72S L73*     793/794
(99 %)
24 diff
(97.0 %id)
BP212418 cerebrum .d 650 to 1207 1 to 558 A14S Q22G I23G R24G     558/558
(100 %)
9 diff
(98.4 %id)
AW161970 brain, frontal lobe .d 651 to 1037 1 to 387       387/387
(100 %)
0 diff
(100 %id)
BG715828 brain, hypothalamus .d 651 to 1356 1 to 705 R5P     705/705
(100 %)
8 diff
(98.9 %id)
DB483991 hippocampus .d 654 to 1152 1 to 499 R24H F121L     499/499
(100 %)
2 diff
(99.6 %id)
TI_45214729   .d 654 to 1439 122 to 909 R70A L71C Q72S L73*     788/910
(86 %)
24 diff
(97.4 %id)
DB498538 hypothalamus .d 656 to 1164 1 to 509 exact     509/518
(98 %)
1 diff
(99.9 %id)
DB504048 hypothalamus .d 656 to 1143 1 to 488 R70A L71C Q72S L73*     488/488
(100 %)
3 diff
(99.4 %id)
BM919896 pooled pancreas and spleen .d 662 to 1359 1 to 696 exact     696/702
(99 %)
6 diff
(99.2 %id)
AW161293 brain, frontal lobe .d 665 to 1140 1 to 476 exact     476/476
(100 %)
0 diff
(100 %id)
BM924607 pooled colon, kidney, stomach .d 665 to 1358 27 to 721 exact     695/728
(95 %)
13 diff
(98.3 %id)
BM924606 pooled colon, kidney, stomach .d 667 to 1355 1 to 691 exact     691/695
(99 %)
11 diff
(98.5 %id)
BI824755 pooled brain, lung, testis .d 670 to 1399 1 to 730 exact     730/738
(98 %)
4 diff
(99.5 %id)
TI_57196851   .d 670 to 1399 33 to 762 exact     730/770
(94 %)
13 diff
(98.4 %id)
BI918612 brain .d 678 to 1355 1 to 676 exact     676/676
(100 %)
12 diff
(98.3 %id)
TI_57238534   .d 678 to 1355 1 to 676 exact     676/676
(100 %)
12 diff
(98.3 %id)
BE885329 leiomyosarcoma, uterus .d 683 to 1276 1 to 594 exact     594/594
(100 %)
6 diff
(99.0 %id)
DN995055 brain, whole brain .d 692 to 1349 9 to 666 exact     658/667
(98 %)
8 diff
(98.9 %id)
BQ723424 sympathetic trunk .d 707 to 1223 12 to 530 exact     519/1009
(51 %)
18 diff
(98.3 %id)
D56295   .d 748 to 955 1 to 212       212/212
(100 %)
4 diff
(98.2 %id)
BI518314 pooled colon, kidney, stomach .d 755 to 1428 790 to 95 S12K F13L A14R D15R R16P ...     696/792
(87 %)
10 diff
(98.8 %id)
TI_45236434   .d 755 to 1428 790 to 95 S12K F13L A14R D15R R16P ...     696/792
(87 %)
10 diff
(98.8 %id)
BT007452   .d 765 to 1128 1 to 364       364/366
(99 %)
1 diff
(99.8 %id)
CV023307 mixed .d 765 to 1031 1 to 269       269/269
(100 %)
2 diff
(99.3 %id)
H97439 melanocyte .d 767 to 961 1 to 195       195/196
(99 %)
3 diff
(98.5 %id)
BE712961 head_neck .d 776 to 1297 1 to 523       523/528
(99 %)
10 diff
(98.2 %id)
BE713004 head_neck .d 776 to 1149 1 to 374       374/374
(100 %)
5 diff
(98.7 %id)
BM703791 eye, human retina .d 874 to 998 1 to 125   fully sequenced,   125/125
(100 %)
0 diff
(100 %id)
BM715386 eye, human retina .d 874 to 1195 1 to 322   fully sequenced,   322/322
(100 %)
1 diff
(99.7 %id)
AI808778 pooled .d 903 to 1569 669 to 6       664/669
(99 %)
5 diff
(99.3 %id)
BE857601 brain, glioblastoma (pooled) .d 908 to 1578 671 to 1   tiling clone,   671/676
(99 %)
30 diff
(95.6 %id)
BU783857 insulinoma, Pancreas .d 918 to 1572 655 to 1       655/655
(100 %)
1 diff
(99.9 %id)
BG054989 brain, glioblastoma (pooled) .d 920 to 1575 661 to 5       657/663
(99 %)
8 diff
(98.8 %id)
BM668783 eye, human retina .d 937 to 1576 659 to 19   fully sequenced, AAA   641/641
(100 %)
2 diff
(99.7 %id)
BI755483 brain .d 987 to 1575 1 to 587       587/730
(80 %)
10 diff
(98.7 %id)
TI_57218793   .d 987 to 1575 110 to 696       587/839
(69 %)
10 diff
(98.9 %id)
BQ638341 eye, retina .d 1026 to 1494 1 to 469       469/469
(100 %)
1 diff
(99.8 %id)
DB297221 cerebellum .d 1027 to 1571 543 to 1       543/543
(100 %)
7 diff
(98.8 %id)
CN367672 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .d 1042 to 1435 1 to 395       395/395
(100 %)
5 diff
(98.8 %id)
AA526969 breast .d 1057 to 1568 511 to 1       511/513
(99 %)
12 diff
(97.7 %id)
DB575300 hypothalamus .d 1104 to 1577 1 to 476     Submitted on the opposite strand 476/476
(100 %)
4 diff
(99.2 %id)
AI146808 heart .d 1120 to 1573 454 to 1       454/454
(100 %)
5 diff
(98.9 %id)
BP390128 pancreatic islet .d 1128 to 1577 1 to 443     Submitted on the opposite strand 443/445
(99 %)
11 diff
(97.6 %id)
AA722187 pineal gland .d 1138 to 1577 445 to 10       436/445
(97 %)
0 diff
(100 %id)
DB552952 hippocampus .d 1145 to 1577 1 to 433     Submitted on the opposite strand 433/433
(100 %)
1 diff
(99.8 %id)
BM665165 eye, human retina .d 1165 to 1576 431 to 19   fully sequenced, AAA   413/413
(100 %)
3 diff
(99.3 %id)
W35334 heart .d 1168 to 1343 1 to 174   fully sequenced,   174/174
(100 %)
4 diff
(97.8 %id)
AI088675 uterus .d 1168 to 1577 425 to 17   AAA   409/409
(100 %)
6 diff
(98.6 %id)
AI990261 pooled germ cell tumors .d 1168 to 1577 417 to 8       410/417
(98 %)
0 diff
(100 %id)
D80207 brain .d 1169 to 1492 1 to 322       322/322
(100 %)
7 diff
(97.9 %id)
R76719 breast .d 1178 to 1553 377 to 1       377/379
(99 %)
7 diff
(98.2 %id)
H97676 melanocyte .d 1178 to 1576 415 to 17   AAA   399/404
(98 %)
9 diff
(97.8 %id)
AW451154   .d 1188 to 1577 407 to 18   AAA   390/390
(100 %)
4 diff
(99.0 %id)
AI983943 colon, colonic mucosa from 3 patients with Crohn'sdisease .d 1198 to 1577 385 to 6       380/385
(98 %)
0 diff
(100 %id)
AW449490   .d 1209 to 1577 386 to 18   AAA   369/369
(100 %)
2 diff
(99.5 %id)
BF589503 Prostate .d 1209 to 1577 377 to 9       369/379
(97 %)
0 diff
(100 %id)
AA719439 pineal gland .d 1212 to 1575 369 to 9       361/369
(97 %)
0 diff
(100 %id)
AI492618 anaplastic oligodendroglioma, brain .d 1213 to 1577 382 to 18   AAA   365/365
(100 %)
5 diff
(98.7 %id)
AW972384   .d 1217 to 1576 361 to 1     Submitted on the opposite strand 361/365
(98 %)
29 diff
(92.1 %id)
AW162759 brain, frontal lobe .d 1218 to 1577 361 to 9       353/361
(97 %)
0 diff
(100 %id)
BM668294 eye, Retina Foveal and Macular .d 1235 to 1577 362 to 19   AAA   344/351
(98 %)
1 diff
(99.8 %id)
H13188 breast .d 1241 to 1577 342 to 1       342/342
(100 %)
14 diff
(96.0 %id)
AI804223 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .d 1247 to 1569 349 to 27   AAA   323/323
(100 %)
10 diff
(97.0 %id)
BF939296 Prostate .d 1248 to 1568 324 to 3       322/324
(99 %)
0 diff
(100 %id)
W23735 heart .d 1321 to 1577 266 to 14   fully sequenced, AAA   253/253
(100 %)
14 diff
(94.5 %id)
AA552629 colon, tumor .d 1323 to 1577 296 to 43   AAA   254/254
(100 %)
2 diff
(99.3 %id)
AI796667 Kidney .d 1327 to 1577 267 to 16   AAA   252/252
(100 %)
7 diff
(97.3 %id)
AI203992 lung .d 1396 to 1577 184 to 3       182/184
(98 %)
0 diff
(100 %id)
BY797856 eye .d 1418 to 1517 1 to 100       100/100
(100 %)
0 diff
(100 %id)
CA434672 lung, Lung Focal Fibrosis .d 1426 to 1577 170 to 19   AAA   152/152
(100 %)
1 diff
(99.4 %id)
AW157796 brain, frontal lobe .d 1451 to 1577 135 to 9       127/135
(94 %)
0 diff
(100 %id)
TI_151770700   .e-u 1 to 610 106 to 717 exact tiling clone,   612/1234
(49 %)
8 diff
(99.4 %id)
BU732830 eye, optic nerve .e-u 188 to 835 667 to 19   tiling clone, AAA   649/649
(100 %)
3 diff
(99.6 %id)
BC015810 Uterus, leiomyosarcoma Gene MAP1LC3A, variant not shown       available from MGC, AAA This clone was ignored    
AJ572932 pectoral muscle (after mastectomy) Gene MAP1LC3A, variant not shown       AAA This clone was ignored    
AL833855 amygdala Gene MAP1LC3A, variant not shown       available from DKFZ, AAA Suspected internal deletion, this clone was ignored    
H40836 brain Gene MAP1LC3A, variant not shown       fully sequenced, Suspected internal deletion, suspected internal deletion, this clone was ignored    
H41614 brain Gene MAP1LC3A, variant not shown       fully sequenced, Suspected internal deletion, suspected internal deletion, this clone was ignored    
AI916646 colon, colon tumor, RER+ Gene MAP1LC3A, variant not shown       AAA This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI