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Gene MAP1DTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
90 supporting clones for gene MAP1D back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AW854721 colon .e 668 to 1008 343 to 3       341/343
(99 %)
0 diff
(100 %id)
AY374142   .a 315 to 1847 1 to 1533   tiling clone, AAA   1533/1533
(100 %)
0 diff
(100 %id)
BC113644 Brain, cerebellum, PCR rescued clones .a 370 to 1848 1 to 1479       1479/1479
(100 %)
1 diff
(100.0 %id)
TI_1243020351   .a 370 to 1455 42 to 1115   AAA   1074/1235
(86 %)
34 diff
(97.3 %id)
TI_1243022711   .a 859 to 1785 7 to 936       930/936
(99 %)
14 diff
(98.6 %id)
TI_1243022719   .a 1533 to 1858 1 to 323       323/724
(44 %)
7 diff
(99.1 %id)
TI_2194628966   .a 731 to 1848 1172 to 57     Submitted on the opposite strand 1116/1305
(85 %)
9 diff
(99.4 %id)
TI_2194629345   .c 1 to 1095 62 to 1147     Submitted on the opposite strand 1089/1267
(85 %)
21 diff
(98.4 %id)
TI_2194630979   .c 1 to 1124 64 to 1178 A107L F109S S110L V111*   Submitted on the opposite strand 1115/1229
(90 %)
23 diff
(98.2 %id)
BQ310586 breast .a 2375 to 2918 1 to 542       542/542
(100 %)
10 diff
(98.2 %id)
BQ310588 breast .a 1212 to 1631 425 to 8       418/431
(96 %)
0 diff
(100 %id)
BQ310589 breast .a 2351 to 2937 1 to 586   tiling clone,   586/587
(99 %)
5 diff
(99.2 %id)
BQ310614 breast .a 2375 to 2918 1 to 542       542/542
(100 %)
10 diff
(98.2 %id)
BX106042 heart .a 2650 to 3329 1 to 683       683/683
(100 %)
3 diff
(99.6 %id)
CD237718 Pituitary .e 484 to 1152 1 to 670   tiling clone, AAA   670/670
(100 %)
9 diff
(98.7 %id)
CN296726 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 436 to 1135 1 to 700       700/703
(99 %)
2 diff
(99.8 %id)
CN296727 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .c 9 to 451 2 to 444       443/444
(99 %)
6 diff
(98.7 %id)
CR747040 melanotic melanoma, skin .a 845 to 1346 9 to 510       502/510
(98 %)
10 diff
(98.1 %id)
AV711374 adrenal cortico adenoma for Cushing'ssyndrome .e 17 to 595 1 to 582 A2G G14V     582/748
(77 %)
14 diff
(98.2 %id)
DQ005576   .a 1 to 1393 1 to 1393   tiling clone,   1393/1395
(99 %)
2 diff
(99.9 %id)
DW425806 Liver .f 1 to 267 18 to 284   tiling clone,   267/284
(94 %)
6 diff
(97.9 %id)
DW464886 Liver .e 1134 to 1478 17 to 361   tiling clone,   345/361
(95 %)
6 diff
(98.4 %id)
DW467648 Liver .a 366 to 698 13 to 345       333/345
(96 %)
7 diff
(98.0 %id)
FN050124 breast carcinoma .a 3316 to 3416 1 to 101       101/101
(100 %)
0 diff
(100 %id)
FN060061 breast carcinoma .a 3336 to 3416 81 to 1     Submitted on the opposite strand 81/81
(100 %)
0 diff
(100 %id)
AV700213 hepatocellular carcinoma .a 1231 to 1753 142 to 663   AAA Submitted on the opposite strand 522/663
(78 %)
13 diff
(98.1 %id)
DB475464 hippocampus .a 373 to 1044 1 to 671       671/671
(100 %)
2 diff
(99.8 %id)
DB544288 hippocampus .a 2929 to 3416 1 to 488     Submitted on the opposite strand 488/488
(100 %)
0 diff
(100 %id)
DB481519 hippocampus .a 373 to 1091 1 to 718       718/725
(99 %)
8 diff
(98.9 %id)
DB550338 hippocampus .a 2700 to 3416 1 to 718     Submitted on the opposite strand 718/718
(100 %)
5 diff
(99.4 %id)
R88881 brain .a 959 to 1315 11 to 371       361/371
(97 %)
12 diff
(96.8 %id)
N51684 multiple sclerosis lesions .a 2954 to 3416 463 to 1   fully sequenced,   463/463
(100 %)
2 diff
(99.6 %id)
N51782 multiple sclerosis lesions .a 2714 to 2984 1 to 275   fully sequenced,   275/275
(100 %)
2 diff
(99.3 %id)
AA022633 heart .a 3138 to 3419 281 to 1   fully sequenced,   281/281
(100 %)
1 diff
(99.7 %id)
AA022781 heart .a 2650 to 3141 1 to 493   fully sequenced,   493/493
(100 %)
3 diff
(99.4 %id)
W84858 liver and spleen .a 1804 to 2235 1 to 432       432/432
(100 %)
2 diff
(99.6 %id)
W84859 liver and spleen .a 3035 to 3416 384 to 1       384/384
(100 %)
5 diff
(98.7 %id)
AA293149 ovarian tumor, ovary .a 1545 to 1867 1 to 323       323/323
(100 %)
1 diff
(99.7 %id)
AA476843 ovarian tumor, ovary .a 1545 to 2013 1 to 466       466/466
(100 %)
4 diff
(99.2 %id)
AA442226   .a 1944 to 2389 1 to 445       445/445
(100 %)
11 diff
(97.6 %id)
AA442892   .a 3030 to 3419 390 to 1       390/390
(100 %)
0 diff
(100 %id)
AA779679   .a 2899 to 3419 522 to 2       521/522
(99 %)
0 diff
(100 %id)
AA602310 normal prostate, Prostate .a 2921 to 3416 508 to 12   AAA   497/497
(100 %)
3 diff
(99.4 %id)
AA877928 colon, colon tumor RER+ .a 2986 to 3416 445 to 15   AAA   431/431
(100 %)
3 diff
(99.4 %id)
AA887324 Kidney .a 1893 to 2005 113 to 1       113/113
(100 %)
0 diff
(100 %id)
AA887326 Kidney .a 1830 to 2006 177 to 1       177/177
(100 %)
3 diff
(98.4 %id)
AI080410 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 3041 to 3416 376 to 1       376/376
(100 %)
2 diff
(99.5 %id)
AI049781   .a 3006 to 3418 413 to 1       413/413
(100 %)
0 diff
(100 %id)
AI129521 uterus .a 1401 to 1855 456 to 2       455/456
(99 %)
6 diff
(98.7 %id)
AI192607 lung .a 2976 to 3419 447 to 3       445/447
(99 %)
0 diff
(100 %id)
AI333643 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1374 to 1847 491 to 18   AAA   474/474
(100 %)
10 diff
(97.9 %id)
AI362530 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .e 750 to 1139 390 to 1   tiling clone,   390/390
(100 %)
0 diff
(100 %id)
AI370447   .a 3037 to 3419 382 to 1       382/382
(100 %)
1 diff
(99.8 %id)
AI688453 colon .a 3120 to 3416 311 to 15   AAA   297/297
(100 %)
3 diff
(99.0 %id)
AI936541 pooled .a 550 to 706 157 to 1       157/157
(100 %)
0 diff
(100 %id)
AI863797 colon, colon tumor, RER+ .a 751 to 1032 282 to 1       282/282
(100 %)
0 diff
(100 %id)
AW140009   .a 3029 to 3416 405 to 18   AAA   388/388
(100 %)
4 diff
(99.0 %id)
AW271625 Kidney .a 2959 to 3419 463 to 3       461/463
(99 %)
0 diff
(100 %id)
AW304423 lung, two pooled squamous cell carcinomas .a 2988 to 3419 432 to 1       432/432
(100 %)
2 diff
(99.6 %id)
BE042868 carcinoid, lung .a 2931 to 3419 490 to 2   tiling clone,   489/490
(99 %)
0 diff
(100 %id)
BE349070 malignant melanoma, metastatic to lymphnode, skin .a 3000 to 3419 422 to 3       420/422
(99 %)
0 diff
(100 %id)
BF438491 brain, glioblastoma (pooled) .a 3144 to 3416 273 to 1       273/273
(100 %)
2 diff
(99.3 %id)
BF000150 colon, colon tumor, RER+ .a 2969 to 3418 450 to 1       450/450
(100 %)
5 diff
(98.9 %id)
BF038945 adenocarcinoma, ovary .a 2538 to 3239 695 to 1     Submitted on the opposite strand 695/695
(100 %)
33 diff
(95.3 %id)
BG258429 embryonal carcinoma, cell line, testis .e 62 to 940 1 to 890   tiling clone,   890/894
(99 %)
59 diff
(93.5 %id)
BC029123 Colon, Kidney, Stomach, adult, whole pooled .a 381 to 2024 1 to 1642   available from MGC, AAA   1642/1642
(100 %)
3 diff
(99.9 %id)
BI760809 pooled colon, kidney, stomach .a 381 to 994 1 to 611   available from MGC,   611/611
(100 %)
3 diff
(99.6 %id)
BI554129 anaplastic oligodendroglioma with 1p/19qloss, brain .a 516 to 1145 146 to 778       633/778
(81 %)
14 diff
(98.3 %id)
BQ002294 Chondrosarcoma, Left Pelvis .a 2968 to 3416 467 to 19   AAA   449/449
(100 %)
1 diff
(99.8 %id)
BQ213852 melanotic melanoma, skin .a 849 to 1503 1 to 670       670/987
(67 %)
32 diff
(96.8 %id)
BU169269 epidermoid carcinoma, cell line, salivary gland .a 1695 to 2580 1 to 894   tiling clone,   894/910
(98 %)
28 diff
(97.0 %id)
BQ898111 dorsal root ganglia .d 1 to 923 1 to 928 exact tiling clone,   928/929
(99 %)
9 diff
(99.1 %id)
BQ718186 sympathetic trunk .f 145 to 1094 1 to 963 E127G D128R W129L S130V D131R ... tiling clone,   963/990
(97 %)
26 diff
(97.4 %id)
BQ955379 epidermoid carcinoma, cell line, lung .a 2659 to 3416 1 to 758   AAA   758/758
(100 %)
4 diff
(99.5 %id)
BU930097 Prostate .e 1 to 704 1 to 712 exact tiling clone,   712/823
(86 %)
19 diff
(97.7 %id)
BC143913 Brain, cerebellum, PCR rescued clones .c 1 to 1565 1 to 1565 exact tiling clone,   1565/1565
(100 %)
1 diff
(100.0 %id)
TI_57147012   .a 381 to 994 30 to 640       611/640
(95 %)
9 diff
(98.6 %id)
TI_44385137   .a 516 to 1145 201 to 833       633/778
(81 %)
14 diff
(98.3 %id)
CB164698 Liver .a 2614 to 3153 1 to 540       540/540
(100 %)
1 diff
(99.9 %id)
NM_199227.1   .a 315 to 1847 1 to 1533   RefSeq, AAA   1533/1533
(100 %)
0 diff
(100 %id)
DB010991 colon, tumor tissue .b 1 to 454 2 to 455   tiling clone, capped   454/454
(100 %)
0 diff
(100 %id)
DB335328 colon, tumor tissue .b 1040 to 1594 555 to 1   tiling clone,   555/565
(98 %)
0 diff
(100 %id)
TI_149296966   .a 2725 to 3416 776 to 90   AAA   687/890
(77 %)
5 diff
(99.5 %id)
BM982111 lung, Primary Lung Cystic Fibrosis EpithelialCells .a 2811 to 3416 624 to 19   AAA   606/606
(100 %)
0 diff
(100 %id)
CA427844 Bone, Subchondral Bone .a 1025 to 1847 836 to 19   AAA   818/818
(100 %)
5 diff
(99.4 %id)
BQ445926 Knee, Osteoarthritic Cartilage .a 2698 to 3416 737 to 19   tiling clone, AAA   719/719
(100 %)
0 diff
(100 %id)
BU632792 cell lines, Chondrosarcoma .a 2784 to 3416 649 to 19   AAA   631/631
(100 %)
2 diff
(99.7 %id)
BU623229 cell lines, Chondrosarcoma .a 2732 to 3416 699 to 19   AAA   681/681
(100 %)
5 diff
(99.3 %id)
TI_2194630976   .a 849 to 1503 1 to 670     Submitted on the opposite strand, submitted on the opposite strand 670/987
(67 %)
32 diff
(96.8 %id)
BQ310587 breast .a 1695 to 2580 1 to 894   tiling clone, Suspected internal deletion, this clone was ignored 894/910
(98 %)
28 diff
(97.0 %id)
BQ310615 breast .a 1695 to 2580 1 to 894   tiling clone, Suspected internal deletion, this clone was ignored 894/910
(98 %)
28 diff
(97.0 %id)
FN145460 breast carcinoma .d 1 to 923 1 to 928   tiling clone,   928/929
(99 %)
9 diff
(99.1 %id)
AV681871 hepatocellular carcinoma .f 145 to 1094 1 to 963   tiling clone, This clone was ignored 963/990
(97 %)
26 diff
(97.4 %id)
DA571261 whole embryo, mainly head .a 2659 to 3416 1 to 758   capped   758/758
(100 %)
4 diff
(99.5 %id)
DB358101 whole embryo, mainly head .a 2659 to 3416 1 to 758       758/758
(100 %)
4 diff
(99.5 %id)
DA666398   .e 1 to 704 1 to 712   tiling clone, capped This clone was ignored 712/823
(86 %)
19 diff
(97.7 %id)
DB322128   .c 1 to 1565 1 to 1565   tiling clone, This clone was ignored 1565/1565
(100 %)
1 diff
(100.0 %id)
TI_57147012   .a 381 to 994 30 to 640       611/640
(95 %)
9 diff
(98.6 %id)
TI_44385137   .a 516 to 1145 201 to 833       633/778
(81 %)
14 diff
(98.3 %id)
CB164698 Liver .a 2614 to 3153 1 to 540       540/540
(100 %)
1 diff
(99.9 %id)
NM_199227.1   .a 315 to 1847 1 to 1533   RefSeq, AAA   1533/1533
(100 %)
0 diff
(100 %id)
DB010991 colon, tumor tissue .b 1 to 454 2 to 455   tiling clone, capped   454/454
(100 %)
0 diff
(100 %id)
DB335328 colon, tumor tissue .b 1040 to 1594 555 to 1   tiling clone,   555/565
(98 %)
0 diff
(100 %id)
TI_149296966   .a 2725 to 3416 776 to 90   AAA   687/890
(77 %)
5 diff
(99.5 %id)
BM982111 lung, Primary Lung Cystic Fibrosis EpithelialCells .a 2811 to 3416 624 to 19   AAA   606/606
(100 %)
0 diff
(100 %id)
BM982111 lung, Primary Lung Cystic Fibrosis EpithelialCells .a 2811 to 3416 624 to 19   AAA   606/606
(100 %)
0 diff
(100 %id)
CA427844 Bone, Subchondral Bone .a 1025 to 1847 836 to 19   AAA   818/818
(100 %)
5 diff
(99.4 %id)
CA427844 Bone, Subchondral Bone .a 1025 to 1847 836 to 19   AAA   818/818
(100 %)
5 diff
(99.4 %id)
BQ445926 Knee, Osteoarthritic Cartilage .a 2698 to 3416 737 to 19   tiling clone, AAA   719/719
(100 %)
0 diff
(100 %id)
BQ445926 Knee, Osteoarthritic Cartilage .a 2698 to 3416 737 to 19   tiling clone, AAA   719/719
(100 %)
0 diff
(100 %id)
BU632792 cell lines, Chondrosarcoma .a 2784 to 3416 649 to 19   AAA   631/631
(100 %)
2 diff
(99.7 %id)
BU632792 cell lines, Chondrosarcoma .a 2784 to 3416 649 to 19   AAA   631/631
(100 %)
2 diff
(99.7 %id)
BU623229 cell lines, Chondrosarcoma .a 2732 to 3416 699 to 19   AAA   681/681
(100 %)
5 diff
(99.3 %id)
BU623229 cell lines, Chondrosarcoma .a 2732 to 3416 699 to 19   AAA   681/681
(100 %)
5 diff
(99.3 %id)
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC