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Gene MAGEC1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
51 supporting clones for gene MAGEC1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_005462.4   .a 1 to 4318 2 to 4319 exact RefSeq, AAA Possibly primed on the genome, locally A rich (10/11 A in genome downstream of last aligned base) 4319/4319
(100 %)
0 diff
(100 %id)
DB066081 testis .a 13 to 570 2 to 559   tiling clone, capped   558/558
(100 %)
0 diff
(100 %id)
DB069805 testis .a 13 to 563 2 to 552   capped   551/551
(100 %)
1 diff
(99.9 %id)
DB087984 testis .a 13 to 549 2 to 539   capped   538/538
(100 %)
2 diff
(99.7 %id)
DB096832 testis .a 13 to 557 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
DB092882 testis .a 17 to 569 2 to 552   capped   551/551
(100 %)
1 diff
(99.9 %id)
DB099371 testis .a 30 to 605 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
AF056334   .a 38 to 4302 1 to 4265 T151I T221S S223R F225S P239S ... tiling clone,   4265/4265
(100 %)
32 diff
(99.3 %id)
DB089898 testis .a 45 to 603 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DB063570 testis .a 57 to 574 2 to 517   capped   516/516
(100 %)
2 diff
(99.7 %id)
BC025969 Placenta, choriocarcinoma .a 61 to 4306 1 to 4456 T221S S223R F225S S267P L283I ... tiling clone, AAA Possibly primed on the genome, locally A rich (10/11 A in genome downstream of last aligned base) 3839/4456
(86 %)
34 diff
(99.3 %id)
BC153867 PCR rescued clones .a 208 to 3835 1 to 3838 T221S S223R F225S P239S F252S ...     3221/3838
(83 %)
35 diff
(99.1 %id)
BF125904 melanotic melanoma, skin .a 1061 to 1767 1 to 711       711/947
(75 %)
32 diff
(96.7 %id)
AY952890   .a 1079 to 4025 624 to 3570   tiling clone, AAA Possibly primed on the genome, locally A rich (10/11 A in genome downstream of last aligned base) 2947/3570
(82 %)
6 diff
(99.9 %id)
AL135051 melanoma (MeWo cell line) .a 1225 to 1865 1 to 642       642/642
(100 %)
5 diff
(99.3 %id)
DB072418 testis .a 1264 to 1725 2 to 463   capped   462/462
(100 %)
1 diff
(99.8 %id)
BM904844 melanotic melanoma, skin .a 1300 to 2118 39 to 873       835/1064
(78 %)
30 diff
(97.2 %id)
BE894795 melanotic melanoma, skin .a 1303 to 1845 1 to 547       547/547
(100 %)
7 diff
(98.8 %id)
DB024227 testis .a 1621 to 2182 2 to 561   capped   560/560
(100 %)
1 diff
(99.9 %id)
DA047350   .a 1687 to 2223 2 to 539   capped   538/538
(100 %)
3 diff
(99.5 %id)
BQ429989 melanotic melanoma, skin .a 1726 to 2613 1 to 903       903/907
(99 %)
35 diff
(96.2 %id)
DA047613   .a 1765 to 2334 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
BM472698 melanotic melanoma, skin .a 1896 to 2630 1 to 741       741/963
(76 %)
12 diff
(98.8 %id)
AL121291 melanoma (MeWo cell line) .a 1977 to 2445 1 to 469       469/469
(100 %)
4 diff
(99.2 %id)
DB049847 testis .a 2107 to 2673 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
BG474862 melanotic melanoma, skin .a 2421 to 3146 1 to 737       737/886
(83 %)
31 diff
(96.6 %id)
BE727610 melanotic melanoma, skin .a 2442 to 3142 1 to 704       704/895
(78 %)
4 diff
(99.6 %id)
BE729100 melanotic melanoma, skin .a 2442 to 3014 1 to 573       573/573
(100 %)
0 diff
(100 %id)
BE728581 melanotic melanoma, skin .a 2442 to 3155 1 to 719       719/882
(81 %)
17 diff
(98.1 %id)
BE729883 melanotic melanoma, skin .a 2442 to 3255 1 to 805       805/933
(86 %)
21 diff
(97.8 %id)
BM792325 Ascites, stomach .a 3060 to 3730 1 to 671       671/671
(100 %)
0 diff
(100 %id)
BE895761 melanotic melanoma, skin .a 3137 to 3883 1 to 743       743/937
(79 %)
25 diff
(97.4 %id)
BE890851 melanotic melanoma, skin .a 3280 to 3888 1 to 612       612/612
(100 %)
10 diff
(98.4 %id)
CA428538 cell lines, Chondrosarcoma .a 3514 to 4178 683 to 19   AAA Possibly primed on the genome, locally A rich (10/11 A in genome downstream of last aligned base) 665/665
(100 %)
0 diff
(100 %id)
BX102175   .a 3547 to 4064 1 to 516       516/516
(100 %)
3 diff
(99.5 %id)
AW515767 pooled germ cell tumors .a 3615 to 4296 682 to 4       679/682
(99 %)
0 diff
(100 %id)
BQ772869 Chondrosarcoma Cell line .a 3633 to 4318 704 to 19   AAA Possibly primed on the genome, locally A rich (10/11 A in genome downstream of last aligned base) 686/686
(100 %)
0 diff
(100 %id)
BU619882 Cell Line, Chondrosarcoma .a 3644 to 4289 661 to 15   AAA Possibly primed on the genome, locally A rich (10/11 A in genome downstream of last aligned base) 647/647
(100 %)
1 diff
(99.9 %id)
BU167318 melanotic melanoma, skin .a 3647 to 4289 1 to 643   AAA Possibly primed on the genome, locally A rich (10/11 A in genome downstream of last aligned base) 643/643
(100 %)
0 diff
(100 %id)
CA428722 Cell Line, Chondrosarcoma .a 3683 to 4289 622 to 15   AAA Possibly primed on the genome, locally A rich (10/11 A in genome downstream of last aligned base) 608/608
(100 %)
1 diff
(99.9 %id)
AI652057 pooled germ cell tumors .a 3791 to 4292 502 to 1       502/502
(100 %)
0 diff
(100 %id)
AL121366 melanoma (MeWo cell line) .a 3837 to 4279 1 to 443       443/443
(100 %)
1 diff
(99.8 %id)
AI126114   .a 3840 to 4289 464 to 17   AAA Possibly primed on the genome, locally A rich (10/11 A in genome downstream of last aligned base) 448/448
(100 %)
2 diff
(99.6 %id)
AW016314   .a 3961 to 4282 343 to 22   AAA   322/330
(97 %)
0 diff
(100 %id)
AI688637 pooled .a 4041 to 4315 292 to 18   AAA Possibly primed on the genome, locally A rich (10/11 A in genome downstream of last aligned base) 275/275
(100 %)
5 diff
(98.2 %id)
DB065460 testis .b 1 to 544 2 to 545 exact tiling clone, capped   544/544
(100 %)
0 diff
(100 %id)
BC127771 PCR rescued clones .c 1 to 1088 1 to 1088 exact tiling clone,   1088/1094
(99 %)
1 diff
(100.0 %id)
BG476223 melanotic melanoma, skin Gene MAGEC1, variant not shown         Suspected internal deletion, this clone was ignored    
BM787462 stomach Gene MAGEC1, variant not shown         Suspected internal deletion, this clone was ignored    
DB087064 testis Gene MAGEC1, variant not shown       capped Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI