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Gene DEPDC7TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
87 supporting clones for gene DEPDC7 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
TI_57168665   .a -11 to 818 33 to 872       840/872
(96 %)
17 diff
(98.1 %id)
CD300610 testis .a -8 to 798 1 to 810   tiling clone,   810/877
(92 %)
4 diff
(99.6 %id)
DB030639 testis .a 1 to 577 8 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
DB054877 testis .a 1 to 562 8 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
BI832965 pooled pancreas and spleen .a 1 to 818 5 to 832       832/832
(100 %)
11 diff
(98.7 %id)
DA041667 bladder .a 1 to 580 2 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
BP289667 lung .a 11 to 593 1 to 583       583/583
(100 %)
1 diff
(99.9 %id)
BI831722 brain, medulla .a 15 to 798 1 to 784       784/788
(99 %)
9 diff
(98.9 %id)
TI_57175602   .a 17 to 798 67 to 848       782/852
(91 %)
15 diff
(98.3 %id)
BF246156 brain, glioblastoma .a 22 to 666 1 to 642   available from MGC,   642/832
(77 %)
35 diff
(95.8 %id)
BC011446 Brain, glioblastoma .a 23 to 1547 5 to 1528   available from MGC, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 1524/1540
(98 %)
5 diff
(99.7 %id)
AJ245600 Kidney .a 25 to 1732 1 to 1708 L273S AAA   1708/1708
(100 %)
1 diff
(100.0 %id)
DA350513 substantia nigra .a 28 to 597 2 to 572   capped   571/572
(99 %)
2 diff
(99.7 %id)
DB442350 testis .a 34 to 417 1 to 384   AAA   384/439
(87 %)
13 diff
(97.1 %id)
CR610553 Neuroblastoma Cot 25-normalized .a 41 to 1698 1 to 1658 exact     1658/1658
(100 %)
0 diff
(100 %id)
BX375298 Neuroblastoma Cot 25-normalized .a 41 to 1036 1 to 989       989/1001
(98 %)
17 diff
(98.4 %id)
AA210949   .a 44 to 469 1 to 427       427/428
(99 %)
5 diff
(98.9 %id)
AV646292 corresponding non cancerous liver tissue .a 60 to 430 1 to 371     Submitted on the opposite strand 371/373
(99 %)
1 diff
(99.8 %id)
TI_1948222281   .a 71 to 1024 129 to 1091       963/1242
(77 %)
32 diff
(97.5 %id)
TI_1948222578   .a 71 to 666 127 to 725       599/1401
(42 %)
18 diff
(98.8 %id)
TI_1948222579   .a 71 to 1024 125 to 1092       968/1226
(78 %)
30 diff
(97.6 %id)
TI_1948222881   .a 71 to 851 127 to 914       788/1294
(60 %)
27 diff
(98.0 %id)
TI_1948222882   .a 71 to 1030 126 to 1096       971/1261
(77 %)
38 diff
(97.0 %id)
TI_1948223189   .a 71 to 799 124 to 858       735/1285
(57 %)
39 diff
(97.0 %id)
TI_1948223190   .a 71 to 1145 130 to 1199       1070/1271
(84 %)
48 diff
(96.3 %id)
EL735762 mixed .a 72 to 651 1 to 580       580/580
(100 %)
1 diff
(99.9 %id)
BQ351226 head_neck .a 94 to 381 293 to 1       293/293
(100 %)
22 diff
(92.5 %id)
BC030970 Bone marrow, chronic myelogenous leukemia .a 145 to 1733 166 to 1754 T464I tiling clone, available from MGC, AAA   1754/1754
(100 %)
4 diff
(99.8 %id)
DA602145   .a 145 to 552 165 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
BF239215 bone marrow, from chronic myelogenous leukemia .a 145 to 661 166 to 688       688/903
(76 %)
18 diff
(98.1 %id)
BU178586 melanotic melanoma, skin .a 145 to 816 160 to 835       835/873
(95 %)
8 diff
(99.1 %id)
NM_001077242.1   .a 145 to 1732 166 to 1753 exact RefSeq, AAA   1753/1753
(100 %)
0 diff
(100 %id)
CB161574 Liver .a 405 to 1007 1 to 603       603/603
(100 %)
0 diff
(100 %id)
BF211609 bone marrow, from chronic myelogenous leukemia .a 592 to 1304 1 to 713       713/732
(97 %)
26 diff
(96.5 %id)
CR590754 Neuroblastoma Cot 25-normalized .a 750 to 1727 1 to 978   tiling clone,   978/978
(100 %)
0 diff
(100 %id)
BX393955 Neuroblastoma Cot 25-normalized .a 750 to 1727 1 to 975   fully sequenced,   975/975
(100 %)
5 diff
(99.5 %id)
BX327643 Neuroblastoma Cot 25-normalized .a 818 to 1661 1 to 838       838/840
(99 %)
20 diff
(97.7 %id)
TI_1948222883   .a 854 to 1606 884 to 124       761/1283
(59 %)
14 diff
(99.0 %id)
TI_1948223191   .a 854 to 1606 880 to 124       757/1229
(61 %)
9 diff
(99.3 %id)
BX372744 Neuroblastoma Cot 25-normalized .a 905 to 1646 748 to 1       748/912
(82 %)
29 diff
(96.9 %id)
BX118181 multiple sclerosis lesions .a 955 to 1717 1 to 763       763/763
(100 %)
0 diff
(100 %id)
TI_1948222282   .a 1029 to 1606 729 to 151       579/1358
(42 %)
16 diff
(98.9 %id)
N47285 multiple sclerosis lesions .a 1059 to 1371 1 to 319   fully sequenced,   319/319
(100 %)
9 diff
(97.2 %id)
AW977300   .a 1117 to 1731 617 to 1     Submitted on the opposite strand 617/622
(99 %)
9 diff
(98.6 %id)
AV720840 corresponding non cancerous liver tissue .a 1125 to 1723 599 to 1     Submitted on the opposite strand 599/599
(100 %)
0 diff
(100 %id)
AV719912 corresponding non cancerous liver tissue .a 1132 to 1716 585 to 1     Submitted on the opposite strand 585/587
(99 %)
34 diff
(94.3 %id)
AI798922 pooled .a 1132 to 1670 541 to 3       539/541
(99 %)
0 diff
(100 %id)
BX392149 Neuroblastoma Cot 25-normalized .a 1178 to 1720 540 to 1   fully sequenced,   540/540
(100 %)
8 diff
(98.6 %id)
AW665379 pooled .a 1218 to 1734 518 to 2       517/518
(99 %)
0 diff
(100 %id)
C06131   .a 1245 to 1734 493 to 6       488/495
(98 %)
8 diff
(98.4 %id)
AA744628 germinal center B cell .a 1250 to 1734 492 to 8       485/492
(98 %)
2 diff
(99.6 %id)
AA744629 germinal center B cell .a 1279 to 1734 463 to 8       456/463
(98 %)
0 diff
(100 %id)
BJ993322 hepatoblastoma .a 1292 to 1695 404 to 1       404/404
(100 %)
1 diff
(99.8 %id)
AI038194   .a 1294 to 1734 446 to 6       441/446
(98 %)
0 diff
(100 %id)
AI699380 pooled .a 1294 to 1731 439 to 1       439/439
(100 %)
2 diff
(99.6 %id)
N48602 multiple sclerosis lesions .a 1341 to 1730 403 to 14   fully sequenced, AAA   390/390
(100 %)
0 diff
(100 %id)
BP423861 small intestine .a 1353 to 1734 1 to 382     Submitted on the opposite strand 382/382
(100 %)
0 diff
(100 %id)
AW236101 Kidney .a 1357 to 1732 376 to 1       376/376
(100 %)
2 diff
(99.5 %id)
AA765424 germinal center B cell .a 1365 to 1677 313 to 1       313/313
(100 %)
10 diff
(96.9 %id)
AW299594 Kidney .a 1372 to 1727 361 to 6       356/361
(98 %)
0 diff
(100 %id)
AA663008   .a 1392 to 1734 345 to 2       344/345
(99 %)
0 diff
(100 %id)
AI796282 Kidney .a 1404 to 1732 329 to 1       329/329
(100 %)
1 diff
(99.7 %id)
C21452   .a 1437 to 1728 1 to 292       292/292
(100 %)
2 diff
(99.4 %id)
AA721670 germinal center B cell .a 1454 to 1734 288 to 8       281/288
(97 %)
0 diff
(100 %id)
AI191159 lung .a 1474 to 1731 259 to 1       259/259
(100 %)
3 diff
(98.9 %id)
AI470591 Kidney .a 1481 to 1732 252 to 1       252/252
(100 %)
1 diff
(99.7 %id)
AA766064 germinal center B cell .a 1501 to 1734 241 to 8       234/241
(97 %)
0 diff
(100 %id)
AA665791   .a 1512 to 1734 226 to 4       223/226
(98 %)
0 diff
(100 %id)
AA865937 Kidney .a 1515 to 1734 222 to 3       220/222
(99 %)
0 diff
(100 %id)
AW665985 pooled .a 1529 to 1734 207 to 2       206/207
(99 %)
0 diff
(100 %id)
BI562409 testis .b 1 to 808 1 to 824   tiling clone,   824/827
(99 %)
62 diff
(92.6 %id)
TI_44350309   .b 8 to 808 128 to 946       819/949
(86 %)
49 diff
(94.9 %id)
DB449712 testis .b 25 to 497 1 to 471   tiling clone,   471/471
(100 %)
8 diff
(98.4 %id)
TI_57172784   .b 100 to 878 60 to 839       780/840
(92 %)
15 diff
(98.3 %id)
AF447588 testis .b 104 to 2095 1 to 1992 F57L L264S tiling clone, AAA   1992/1992
(100 %)
5 diff
(99.8 %id)
BI830745 brain, medulla .b 104 to 878 1 to 776       776/777
(99 %)
12 diff
(98.5 %id)
NM_139160.2   .b 104 to 2095 1 to 1992 exact RefSeq, AAA   1992/1992
(100 %)
0 diff
(100 %id)
BI829885 brain, medulla .b 346 to 1166 1 to 821   tiling clone,   821/821
(100 %)
6 diff
(99.3 %id)
TI_57176468   .b 346 to 1166 74 to 894       821/894
(91 %)
10 diff
(98.9 %id)
BI461295 testis .c 1 to 804 3 to 800 S185P P186L H187M V188* tiling clone,   800/809
(98 %)
22 diff
(97.3 %id)
AK295960 substantia nigra .c 1 to 1117 2 to 1118 E176G tiling clone,   1118/1118
(100 %)
2 diff
(99.9 %id)
AK294934 brain .d -8 to 1203 1 to 1212 exact tiling clone,   1212/1212
(100 %)
0 diff
(100 %id)
DC322915 brain .d -8 to 563 1 to 572       572/572
(100 %)
0 diff
(100 %id)
DC412863 liver, tumor tissue .d 27 to 583 1 to 558       558/558
(100 %)
1 diff
(99.9 %id)
AV682448 hepatocellular carcinoma .e-u 1 to 688 1 to 687 exact tiling clone,   687/687
(100 %)
7 diff
(99.0 %id)
DW431190 Liver .e-u 363 to 616 17 to 270       254/270
(94 %)
6 diff
(97.8 %id)
DW452086 Liver .e-u 363 to 718 17 to 372   tiling clone,   356/372
(95 %)
6 diff
(98.4 %id)
DW408723 Liver .f-u 1 to 321 17 to 337 exact tiling clone,   321/342
(93 %)
4 diff
(98.9 %id)
AV662027 corresponding non cancerous liver tissue Gene DEPDC7, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e-u, .f-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C