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Gene C1orf201TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
130 supporting clones for gene C1orf201 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AK299401 tongue .a 1 to 1747 2 to 1649 S54I K141S A142K L143T K144Q ... tiling clone, Suspected internal deletion 1649/1649
(100 %)
2 diff
(99.9 %id)
TI_57171578   .b 1 to 961 31 to 997   tiling clone,   967/998
(96 %)
40 diff
(96.0 %id)
BI828189 brain, medulla .b 5 to 961 1 to 963       963/964
(99 %)
34 diff
(96.5 %id)
BC047705 Brain, adult, 6 pooled whole brains .b 131 to 2627 5 to 2501   tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 2501/2501
(100 %)
0 diff
(100 %id)
NM_178122.3   .b 131 to 2627 4 to 2500   RefSeq, AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 2500/2500
(100 %)
0 diff
(100 %id)
BP431573   .c 1 to 318 1 to 318   tiling clone,   318/318
(100 %)
1 diff
(99.7 %id)
DB448251 testis .c 209 to 643 1 to 433   tiling clone,   433/433
(100 %)
12 diff
(97.3 %id)
BE242924 leukopheresis .c 340 to 628 1 to 288   tiling clone,   288/288
(100 %)
2 diff
(99.4 %id)
CR745821 melanocyte .c 358 to 1102 1 to 746       746/746
(100 %)
3 diff
(99.6 %id)
CR591554 B cells (Ramos cell line) Cot 25-normalized .c 379 to 3005 1 to 2627 exact tiling clone,   2627/2627
(100 %)
0 diff
(100 %id)
AL560750 B cells from Burkitt lymphoma .c 379 to 1382 1 to 1005       1005/1005
(100 %)
1 diff
(100.0 %id)
BM922375 leukocyte .c 387 to 1474 10 to 1097       1088/1099
(98 %)
26 diff
(97.7 %id)
TI_57172614   .c 400 to 1154 34 to 786       753/788
(95 %)
16 diff
(98.0 %id)
BI828801 brain, medulla .c 405 to 1154 1 to 748       748/750
(99 %)
10 diff
(98.7 %id)
N43868.
matches multiple genes
melanocyte .c 408 to 754 42 to 388     also hits gene DUSP8 347/404
(85 %)
8 diff
(98.1 %id)
DB452963 testis .c 422 to 912 1 to 491       491/491
(100 %)
3 diff
(99.4 %id)
BC040212 testis .d 1 to 2804 2 to 2805 G51R F52I N53Q S54Y Q55S ... tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 2805/2805
(100 %)
6 diff
(99.8 %id)
BG723366 testis .d 2 to 606 8 to 614   tiling clone, available from MGC,   605/614
(98 %)
8 diff
(98.7 %id)
CD705696 normal nasopharynx .d 449 to 882 15 to 448       434/448
(96 %)
8 diff
(98.3 %id)
TI_1948230316   .d 512 to 770 102 to 357   fully sequenced,   256/265
(96 %)
6 diff
(97.8 %id)
TI_1948230486   .d 512 to 764 111 to 360   fully sequenced,   250/259
(96 %)
7 diff
(97.3 %id)
TI_1948230651   .d 512 to 749 110 to 344   fully sequenced,   235/244
(96 %)
6 diff
(97.6 %id)
TI_1948230817   .d 512 to 756 109 to 350       242/251
(96 %)
6 diff
(97.7 %id)
EL736993 mixed .d 533 to 1186 1 to 654   tiling clone,   654/654
(100 %)
0 diff
(100 %id)
AW379700 head_neck .d 547 to 828 289 to 5       285/314
(90 %)
14 diff
(95.6 %id)
BQ367746 placenta_normal .d 582 to 994 14 to 427       414/435
(95 %)
15 diff
(96.6 %id)
CN404566 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .d 668 to 880 1 to 213       213/213
(100 %)
0 diff
(100 %id)
BC017650 Lung, large cell carcinoma .d 683 to 2781 1 to 2098   available from MGC, AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 2098/2098
(100 %)
4 diff
(99.9 %id)
TI_1948230652   .d 688 to 1260 696 to 124   fully sequenced,   573/600
(95 %)
0 diff
(100 %id)
BE787676 large cell carcinoma, lung .d 704 to 1460 1 to 748   available from MGC,   671/940
(71 %)
33 diff
(96.5 %id)
AA458597 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .d 719 to 1163 1 to 443       443/443
(100 %)
4 diff
(99.1 %id)
TI_1948230487   .d 734 to 1258 650 to 126   fully sequenced,   525/553
(94 %)
0 diff
(100 %id)
TI_1948230317   .d 740 to 1260 648 to 128   fully sequenced,   521/548
(95 %)
0 diff
(100 %id)
TI_1948230818   .d 773 to 1260 616 to 129       488/515
(94 %)
0 diff
(100 %id)
BX370610   .d 994 to 1873 1 to 878       878/878
(100 %)
7 diff
(99.3 %id)
BX350576   .d 1035 to 1904 879 to 8       872/888
(98 %)
10 diff
(98.9 %id)
AW966015   .d 1066 to 1705 640 to 1     Submitted on the opposite strand 640/640
(100 %)
3 diff
(99.6 %id)
BM701768 eye, optic nerve .d 1083 to 1750 1 to 668     Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 668/668
(100 %)
4 diff
(99.5 %id)
AW118579 pooled .d 1194 to 1707 516 to 5       512/516
(99 %)
0 diff
(100 %id)
AI808965 pooled .d 1237 to 1707 473 to 5       469/473
(99 %)
0 diff
(100 %id)
AI075898   .d 1251 to 1707 459 to 3       457/459
(99 %)
0 diff
(100 %id)
AI672547 pooled germ cell tumors .d 1276 to 1706 431 to 1       431/431
(100 %)
4 diff
(99.1 %id)
AI217653   .d 1338 to 1707 372 to 3       370/372
(99 %)
0 diff
(100 %id)
AI247349 pooled .d 1476 to 1852 380 to 4       377/380
(99 %)
0 diff
(100 %id)
BE139395 ovary, papillary serous carcinoma .d 1581 to 1704 9 to 132     Submitted on the opposite strand 124/132
(93 %)
6 diff
(95.5 %id)
AL582152 B cells from Burkitt lymphoma .d 1702 to 2756 1053 to 1       1053/1053
(100 %)
14 diff
(98.7 %id)
BM724790 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .d 1704 to 2405 1 to 700   fully sequenced, Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 700/700
(100 %)
1 diff
(99.9 %id)
BE252498 eye, retinoblastoma .d 1730 to 2313 1 to 584       584/584
(100 %)
1 diff
(99.9 %id)
BI334471 cervical carcinoma cell line, cervix .d 1833 to 2467 1 to 633       633/633
(100 %)
4 diff
(99.4 %id)
TI_149309763   .d 1845 to 2804 1029 to 84   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 946/990
(95 %)
27 diff
(97.3 %id)
BI257452 cervical carcinoma cell line, cervix .d 2013 to 2348 1 to 338       338/338
(100 %)
12 diff
(96.5 %id)
TI_154001274   .d 2014 to 2804 859 to 82   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 778/819
(94 %)
17 diff
(98.0 %id)
BQ009074 Chondrosarcoma, Left Pubic Bone .d 2034 to 2804 789 to 19   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 771/771
(100 %)
4 diff
(99.5 %id)
TI_154050594   .d 2049 to 2800 844 to 103   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 742/954
(77 %)
18 diff
(98.2 %id)
TI_154135393   .d 2056 to 2804 830 to 86   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 745/1028
(72 %)
18 diff
(98.3 %id)
TI_154195790   .d 2062 to 2804 3 to 750       748/1038
(72 %)
35 diff
(96.7 %id)
BQ772871 Chondrosarcoma Cell line .d 2127 to 2800 692 to 19   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 674/674
(100 %)
2 diff
(99.8 %id)
CA414102 Chondrosarcoma Grade II, Left Pelvis .d 2130 to 2800 688 to 19   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 670/670
(100 %)
5 diff
(99.3 %id)
BU688133 lung .d 2180 to 2804 644 to 19   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 626/626
(100 %)
1 diff
(99.9 %id)
AA359350 lung .d 2194 to 2519 1 to 328       328/328
(100 %)
4 diff
(98.8 %id)
BM666616 eye, optic nerve .d 2205 to 2800 614 to 19   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 596/596
(100 %)
4 diff
(99.4 %id)
BM725202 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .d 2206 to 2696 1 to 491       491/491
(100 %)
0 diff
(100 %id)
AI916378 Kidney .d 2228 to 2804 577 to 1       577/577
(100 %)
0 diff
(100 %id)
CA433130 mixed .d 2233 to 2804 590 to 19   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 572/572
(100 %)
3 diff
(99.5 %id)
BE671033 carcinoid, lung .d 2254 to 2801 553 to 7       547/553
(98 %)
0 diff
(100 %id)
TI_154090022   .d 2258 to 2804 671 to 122   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 550/552
(99 %)
13 diff
(97.7 %id)
BU729288 eye, human retina .d 2262 to 2800 558 to 19   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 540/540
(100 %)
2 diff
(99.7 %id)
AI831585 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .d 2287 to 2803 516 to 1       516/516
(100 %)
2 diff
(99.7 %id)
BF058926 fibrotheoma, ovary .d 2335 to 2801 468 to 3       466/468
(99 %)
0 diff
(100 %id)
CN404565 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .d 2350 to 2801 1 to 452       452/455
(99 %)
5 diff
(99.0 %id)
AI146799 heart .d 2361 to 2806 447 to 2   tiling clone,   446/447
(99 %)
0 diff
(100 %id)
DB546372 hippocampus .d 2362 to 2799 1 to 436     Submitted on the opposite strand 436/437
(99 %)
3 diff
(99.4 %id)
AW591865 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .d 2369 to 2805 439 to 4       436/439
(99 %)
0 diff
(100 %id)
AW571565 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .d 2373 to 2805 437 to 8       430/437
(98 %)
0 diff
(100 %id)
BU741428 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .d 2375 to 2806 447 to 17   fully sequenced, AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 431/431
(100 %)
5 diff
(98.9 %id)
AI041029   .d 2376 to 2799 425 to 4       422/425
(99 %)
0 diff
(100 %id)
DB518430 testis .d 2380 to 2804 1 to 423   AAA Submitted on the opposite strand 423/423
(100 %)
5 diff
(98.9 %id)
N33477 melanocyte .d 2384 to 2804 418 to 1       418/418
(100 %)
3 diff
(99.3 %id)
CO248391 Chondrosarcoma Lung Metastasis cell lines, lung .d 2397 to 2800 31 to 419       389/698
(55 %)
18 diff
(97.5 %id)
AA725892   .d 2409 to 2801 399 to 7       393/399
(98 %)
0 diff
(100 %id)
AA218972 brain, neuroepithelial cells .d 2416 to 2805 404 to 8       397/483
(82 %)
0 diff
(100 %id)
AI864492 lymph node, lymphoma, follicular mixed small and largecell .d 2492 to 2800 306 to 1       306/306
(100 %)
3 diff
(99.1 %id)
AI633784 pooled germ cell tumors .d 2592 to 2800 249 to 42   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 208/208
(100 %)
9 diff
(95.7 %id)
DB512674 testis .d 2594 to 2800 1 to 206     Submitted on the opposite strand 206/206
(100 %)
1 diff
(99.6 %id)
BU633776 cell lines, Chondrosarcoma .d 2632 to 2804 191 to 19   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 173/173
(100 %)
2 diff
(98.9 %id)
BG718369 testis .e 1 to 758 8 to 765   tiling clone,   758/770
(98 %)
14 diff
(98.2 %id)
AA421237   .e 510 to 958 1 to 447   tiling clone,   447/447
(100 %)
2 diff
(99.6 %id)
AA421277   .e 1164 to 1534 369 to 1   tiling clone,   369/369
(100 %)
2 diff
(99.5 %id)
BM926063 brain .f 1 to 891 1 to 898 C2G V3I L5R F6I S14I ... tiling clone,   898/1153
(77 %)
28 diff
(97.6 %id)
DA696268   .g 1 to 573 2 to 574   tiling clone, capped   573/573
(100 %)
1 diff
(99.9 %id)
BF979512 testis .g 15 to 743 1 to 730       730/896
(81 %)
31 diff
(96.6 %id)
AK090659 cerebellum .g 20 to 2568 1 to 1790   tiling clone, available from FLJ,   1584/1790
(88 %)
21 diff
(98.9 %id)
AX746563   .g 20 to 2568 1 to 1790       1584/1790
(88 %)
21 diff
(98.9 %id)
DA055773 cerebellum .g 21 to 567 2 to 547   capped   546/546
(100 %)
4 diff
(99.3 %id)
N35642 melanocyte .g 44 to 411 1 to 370   tiling clone, fully sequenced,   370/370
(100 %)
4 diff
(99.0 %id)
DB447633 testis .g 46 to 479 1 to 434       434/434
(100 %)
3 diff
(99.4 %id)
AA364248 pineal body .g 157 to 454 1 to 299       299/306
(97 %)
3 diff
(99.1 %id)
AA220953.
matches multiple genes
brain, neuroepithelial cells .g 174 to 536 1 to 362     also hits gene plaporby 362/375
(96 %)
6 diff
(98.4 %id)
N26531 melanocyte .g 381 to 739 357 to 1   fully sequenced,   357/357
(100 %)
2 diff
(99.5 %id)
BF980132 testis .g 810 to 1417 607 to 1   tiling clone,   607/607
(100 %)
11 diff
(98.2 %id)
DB296566 cerebellum .g 2029 to 2568 539 to 1   tiling clone,   539/539
(100 %)
5 diff
(99.1 %id)
BC035061 Brain, hippocampus .h 1 to 2822 6 to 2825 I13V P141T P240R tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 2820/2821
(99 %)
11 diff
(99.7 %id)
DB467540 hippocampus .h 1 to 482 1 to 482       482/482
(100 %)
1 diff
(99.8 %id)
DB477767 hippocampus .h 1 to 488 1 to 488       488/488
(100 %)
3 diff
(99.4 %id)
BC063891 testis .h 81 to 2827 1 to 2747 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 2747/2747
(100 %)
0 diff
(100 %id)
CD359153 testis .h 82 to 742 27 to 688       662/950
(69 %)
24 diff
(97.5 %id)
BM905986 ovary (pool of 3) .i 1 to 1094 16 to 1132 I58V T168N N169Q R170P G171W ... tiling clone,   1117/1132
(98 %)
68 diff
(94.0 %id)
BG193665   .i 296 to 990 35 to 735       706/864
(81 %)
58 diff
(93.3 %id)
BG220622   .i 296 to 936 20 to 663       649/865
(75 %)
30 diff
(96.6 %id)
BG183720   .i 301 to 1111 1 to 806   tiling clone,   806/807
(99 %)
13 diff
(98.4 %id)
BG218107   .i 301 to 1049 1 to 737   tiling clone,   737/795
(92 %)
31 diff
(96.2 %id)
BG211712   .j 1 to 620 7 to 626 R2T S3A S4V E5R D6T ... tiling clone, AAA   625/626
(99 %)
11 diff
(98.3 %id)
AA830620 germinal center B cell .j 149 to 567 429 to 11   AAA   419/419
(100 %)
3 diff
(99.3 %id)
AI097280 heart .j 151 to 623 485 to 13   tiling clone, AAA   473/484
(97 %)
0 diff
(100 %id)
AI695761 Prostate .j 278 to 603 326 to 1       326/326
(100 %)
0 diff
(100 %id)
AA731412 germinal center B cell .j 566 to 827 273 to 12   tiling clone, AAA Possibly primed on the genome, locally A rich (18/21 A in genome downstream of last aligned base) 262/262
(100 %)
1 diff
(99.7 %id)
BC034315 testis .k 1 to 4191 1 to 4191 I13V tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 4191/4191
(100 %)
13 diff
(99.7 %id)
BG722810 testis .k 65 to 762 88 to 773   available from MGC,   686/773
(88 %)
6 diff
(99.3 %id)
BG142149 Islets of Langerhans, Pancreas .k 1551 to 1980 1 to 431   tiling clone,   431/431
(100 %)
5 diff
(98.9 %id)
BI546567 brain, hippocampus .k 3190 to 4045 1 to 858   tiling clone,   858/876
(97 %)
17 diff
(98.1 %id)
TI_44168830   .k 3195 to 4045 86 to 938       853/956
(89 %)
19 diff
(98.1 %id)
BG211410   .k 3541 to 4191 1 to 653 exact tiling clone, AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 653/653
(100 %)
4 diff
(99.4 %id)
AK025957   .l 1 to 1666 1 to 1666 exact tiling clone, available from FLJ, AAA   1666/1666
(100 %)
3 diff
(99.9 %id)
BF213366 bone marrow, from acute myelogenous leukemia .l 484 to 1192 1 to 701   tiling clone,   701/897
(78 %)
18 diff
(98.0 %id)
BU628391 cell lines, Chondrosarcoma .l 1073 to 1708 654 to 19   AAA   636/636
(100 %)
1 diff
(99.9 %id)
DA067625 cerebellum .l 1428 to 1998 2 to 572   tiling clone, capped   571/571
(100 %)
0 diff
(100 %id)
DB297355 cerebellum .l 2678 to 3226 549 to 1   tiling clone,   549/549
(100 %)
0 diff
(100 %id)
BF434813 Kidney .m 1 to 455 461 to 7 E5X tiling clone,   455/461
(98 %)
0 diff
(100 %id)
AI991525 Kidney .m 156 to 451 296 to 1       296/296
(100 %)
1 diff
(99.7 %id)
DA175929 amygdala .m 267 to 835 2 to 570   tiling clone, capped   569/569
(100 %)
2 diff
(99.7 %id)
DB302753 amygdala .m 1504 to 2062 562 to 1   tiling clone,   562/562
(100 %)
4 diff
(99.3 %id)
TI_57243977   .n 1 to 812 40 to 852 exact tiling clone,   813/852
(95 %)
8 diff
(99.1 %id)
BI917854 brain .n 2 to 812 1 to 812 exact     812/812
(100 %)
2 diff
(99.8 %id)
BG206955   .n 377 to 1115 1 to 736 exact tiling clone,   735/774
(94 %)
20 diff
(97.5 %id)
BG188334   .n 380 to 1146 1 to 767 exact tiling clone,   767/767
(100 %)
10 diff
(98.7 %id)
BG210525   .n 602 to 845 1 to 243   tiling clone,   243/246
(98 %)
2 diff
(99.2 %id)
BF816109 colon_ins .n 658 to 1040 383 to 1     Submitted on the opposite strand 383/383
(100 %)
6 diff
(98.5 %id)
BX956849   .o-u 1 to 650 1 to 650 exact tiling clone,   650/650
(100 %)
1 diff
(99.9 %id)
AW016859   .p-u 1 to 302 319 to 18 T12N tiling clone, AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 302/302
(100 %)
3 diff
(99.1 %id)
DB315901 brain Gene C1orf201, variant not shown         This clone was ignored    
DA501936 brain Gene C1orf201, variant not shown       capped This clone was ignored    
AA490105   Gene C1orf201, variant not shown         This clone was ignored    
AA504693   Gene C1orf201, variant not shown         This clone was ignored    
DC373226 tongue Gene C1orf201, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o-u, .p-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C