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Gene SHFTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
125 supporting clones for gene SHF back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AK096267   .a 1 to 2500 2 to 2500 A177P L337S R338G L339C C340A ... tiling clone, available from FLJ,   2500/2500
(100 %)
5 diff
(99.8 %id)
NM_138356.2   .a 1 to 2498 2 to 2499 A177P RefSeq, AAA Possibly primed on the genome, locally A rich (25/26 A in genome downstream of last aligned base) 2499/2499
(100 %)
1 diff
(100.0 %id)
DA697048   .a 1 to 565 2 to 569   capped   568/568
(100 %)
4 diff
(99.3 %id)
DA999031 breast, tumor tissue .a 59 to 623 2 to 567   capped   566/566
(100 %)
1 diff
(99.9 %id)
DA088741 cerebellum .a 60 to 632 2 to 578   capped   577/577
(100 %)
4 diff
(99.4 %id)
CN287519 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 128 to 701 1 to 574   tiling clone,   574/574
(100 %)
1 diff
(99.9 %id)
TI_927046547   .a 844 to 1356 530 to 18       513/601
(85 %)
1 diff
(99.9 %id)
TI_927047102   .a 844 to 1358 530 to 16       515/1278
(40 %)
1 diff
(100.0 %id)
AA323182 brain, cerebellum .a 945 to 1187 1 to 243       243/243
(100 %)
1 diff
(99.6 %id)
AA324853 brain, cerebellum .a 945 to 1293 1 to 352       352/354
(99 %)
10 diff
(97.2 %id)
AW246948 lung, small cell carcinoma .a 1049 to 1117 10 to 78       69/82
(84 %)
1 diff
(98.8 %id)
F13153 brain, total brain .a 1093 to 1422 1 to 330       330/330
(100 %)
0 diff
(100 %id)
R59413 whole brain .a 1094 to 1580 1 to 497     Possibly primed on the genome, locally A rich (25/26 A in genome downstream of last aligned base) 495/539
(91 %)
18 diff
(96.7 %id)
BX416415 neuroblastoma .a 1309 to 2323 1006 to 1   tiling clone,   1006/1024
(98 %)
12 diff
(98.9 %id)
BU861113 mixed (pool of 40 RNAs) .a 1418 to 1879 1 to 462       462/468
(98 %)
1 diff
(99.8 %id)
CN262799 embryonic stem cells, DMSO-treated H9 cellline .a 1466 to 2128 1 to 663       663/663
(100 %)
4 diff
(99.4 %id)
BM699201 eye, fetal eyes .a 1525 to 2072 1 to 548     Possibly primed on the genome, locally A rich (25/26 A in genome downstream of last aligned base) 548/548
(100 %)
1 diff
(99.9 %id)
AA322771 brain, cerebellum .a 1537 to 1807 1 to 271       271/271
(100 %)
0 diff
(100 %id)
BX406518 fetal liver, Liver .a 1584 to 2454 866 to 1       866/866
(100 %)
13 diff
(98.5 %id)
BX419734 brain, fetal brain .a 1612 to 2294 732 to 43       690/702
(98 %)
0 diff
(100 %id)
AA325868 brain, cerebellum .a 1642 to 1946 1 to 305       305/305
(100 %)
2 diff
(99.4 %id)
AW962195   .a 1644 to 2294 1 to 654       654/669
(97 %)
26 diff
(96.2 %id)
BM712160 eye, lens .a 1648 to 2015 1 to 368       368/368
(100 %)
0 diff
(100 %id)
BE314584 brain, neuroblastoma .a 1661 to 2254 30 to 631       602/672
(89 %)
14 diff
(98.0 %id)
BF313877 brain, neuroblastoma .a 1667 to 2409 1 to 740       740/1127
(65 %)
46 diff
(96.0 %id)
BM715118 eye, human retina .a 1684 to 2212 1 to 529   fully sequenced, Possibly primed on the genome, locally A rich (25/26 A in genome downstream of last aligned base) 529/529
(100 %)
1 diff
(99.9 %id)
TI_149308838   .a 1743 to 2498 852 to 96   AAA Possibly primed on the genome, locally A rich (25/26 A in genome downstream of last aligned base) 757/967
(78 %)
4 diff
(99.6 %id)
BX459722 brain, fetal brain .a 1898 to 2424 524 to 1       524/528
(99 %)
15 diff
(97.2 %id)
AA716748 heart .a 2013 to 2380 366 to 1       366/366
(100 %)
0 diff
(100 %id)
AA534696 colon .a 2024 to 2498 471 to 1       471/471
(100 %)
13 diff
(97.3 %id)
T05321   .a 2054 to 2291 1 to 238       238/359
(66 %)
2 diff
(99.5 %id)
BX351121 Neuroblastoma Cot 25-normalized .a 2061 to 2374 314 to 1       314/314
(100 %)
9 diff
(97.2 %id)
AA679825   .a 2089 to 2498 405 to 1       405/405
(100 %)
12 diff
(97.1 %id)
AI274320 adenocarcinoma, colon .a 2094 to 2380 290 to 4       287/293
(97 %)
0 diff
(100 %id)
AI760446 colon, colon tumor, RER+ .a 2097 to 2497 402 to 1       402/406
(99 %)
6 diff
(98.6 %id)
BF508589   .a 2097 to 2374 295 to 18   AAA Possibly primed on the genome, locally A rich (25/26 A in genome downstream of last aligned base) 278/278
(100 %)
1 diff
(99.7 %id)
BX412585 brain, fetal brain .a 2098 to 2490 394 to 1       394/394
(100 %)
27 diff
(93.2 %id)
BM669861 eye, fetal eyes .a 2100 to 2498 417 to 19   AAA Possibly primed on the genome, locally A rich (25/26 A in genome downstream of last aligned base) 399/399
(100 %)
0 diff
(100 %id)
T15624   .a 2105 to 2498 395 to 1       395/395
(100 %)
22 diff
(94.5 %id)
BU687287 lung .a 2107 to 2498 410 to 19   AAA Possibly primed on the genome, locally A rich (25/26 A in genome downstream of last aligned base) 392/392
(100 %)
1 diff
(99.8 %id)
AI870727 anaplastic oligodendroglioma, brain .a 2109 to 2498 408 to 19   AAA Possibly primed on the genome, locally A rich (25/26 A in genome downstream of last aligned base) 390/390
(100 %)
15 diff
(96.2 %id)
AI768068 colon, colon tumor, RER+ .a 2116 to 2497 382 to 1       382/382
(100 %)
3 diff
(99.3 %id)
R59356 whole brain .a 2142 to 2498 360 to 11   AAA Possibly primed on the genome, locally A rich (25/26 A in genome downstream of last aligned base) 350/353
(99 %)
12 diff
(96.7 %id)
AA480322 colon .a 2150 to 2498 345 to 1       345/345
(100 %)
12 diff
(96.6 %id)
BM665833 eye, human retina .a 2182 to 2498 335 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (25/26 A in genome downstream of last aligned base) 317/317
(100 %)
1 diff
(99.7 %id)
BF445569 sympathetic trunk .a 2189 to 2499 317 to 7   tiling clone,   311/317
(98 %)
0 diff
(100 %id)
F10756 brain, total brain .a 2222 to 2492 269 to 1       269/269
(100 %)
5 diff
(98.2 %id)
AA978257 pooled .a 2334 to 2498 163 to 1       163/164
(99 %)
9 diff
(94.6 %id)
AA907744 pooled .a 2348 to 2499 146 to 1       146/148
(98 %)
8 diff
(94.6 %id)
BX442519 brain, fetal brain .b 1 to 972 1 to 964   tiling clone,   964/980
(98 %)
26 diff
(97.4 %id)
DA017657 adrenal gland .b 293 to 772 2 to 481   tiling clone, capped   480/480
(100 %)
1 diff
(99.8 %id)
DA061244 cerebellum .b 299 to 868 2 to 571   tiling clone, capped   570/570
(100 %)
2 diff
(99.7 %id)
BX442518 brain, fetal brain .b 1203 to 2255 1043 to 1   tiling clone,   1043/1093
(95 %)
11 diff
(99.0 %id)
DR033717 brain, Right frontal lobe .c 1 to 96 1 to 95   tiling clone,   95/95
(100 %)
5 diff
(94.8 %id)
CR604168 T cells (Jurkat cell line) .c 23 to 2049 1 to 2027   tiling clone,   2027/2027
(100 %)
0 diff
(100 %id)
BX421607 T cells (Jurkat cell line) .c 23 to 1107 1 to 1086   fully sequenced,   1086/1086
(100 %)
19 diff
(98.3 %id)
BI196102 brain, neuroblastoma .c 23 to 246 1 to 224       224/232
(96 %)
5 diff
(97.9 %id)
CX165901 human embryonic stem cells differentiated toan early endodermal cell type .c 25 to 216 1 to 192       192/203
(94 %)
1 diff
(99.6 %id)
CR610652 Neuroblastoma Cot 25-normalized .c 241 to 1907 1 to 1667       1667/1667
(100 %)
0 diff
(100 %id)
BX332806 Neuroblastoma Cot 25-normalized .c 241 to 1120 1 to 879   fully sequenced,   879/879
(100 %)
16 diff
(98.2 %id)
BM469805 melanotic melanoma, skin .c 663 to 1164 14 to 515       505/1247
(40 %)
16 diff
(98.8 %id)
BX324454 Neuroblastoma Cot 25-normalized .c 917 to 1945 1026 to 1       1026/1026
(100 %)
16 diff
(98.5 %id)
BX421606 T cells (Jurkat cell line) .c 1077 to 2049 965 to 1   fully sequenced,   965/965
(100 %)
1 diff
(99.9 %id)
BX332805 Neuroblastoma Cot 25-normalized .c 1090 to 1907 817 to 1   fully sequenced,   817/817
(100 %)
3 diff
(99.7 %id)
CR626127 Neuroblastoma Cot 10-normalized .d 1 to 1774 1 to 1774 exact tiling clone,   1774/1774
(100 %)
0 diff
(100 %id)
BX352799 Neuroblastoma Cot 10-normalized .d 1 to 858 1 to 850   fully sequenced,   850/850
(100 %)
8 diff
(99.1 %id)
BC007586 Brain, neuroblastoma .d 354 to 1789 1 to 1436   tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (25/26 A in genome downstream of last aligned base) 1436/1436
(100 %)
2 diff
(99.9 %id)
BE313939 brain, neuroblastoma .d 373 to 1126 1 to 742   available from MGC,   742/747
(99 %)
30 diff
(96.0 %id)
BM478261 eye, retinoblastoma .d 478 to 1246 1 to 787       787/1186
(66 %)
43 diff
(96.4 %id)
BX352798 Neuroblastoma Cot 10-normalized .d 828 to 1774 944 to 1   fully sequenced,   944/944
(100 %)
10 diff
(99.0 %id)
CR607464 Neuroblastoma Cot 50-normalized .e 1 to 1474 1 to 1474 exact tiling clone,   1474/1474
(100 %)
0 diff
(100 %id)
AL529700 brain, neuroblastoma cells, Neuroblastoma Cot 50-normalized .e 1 to 718 1 to 718       718/1034
(69 %)
14 diff
(98.7 %id)
AL563524 brain, neuroblastoma cells, Neuroblastoma Cot 50-normalized .e 692 to 1474 782 to 1       782/1019
(76 %)
6 diff
(99.5 %id)
CR613819 fetal liver .f 1 to 1731 1 to 1731 exact tiling clone,   1731/1731
(100 %)
0 diff
(100 %id)
BX423813 fetal liver, Liver .f 1 to 889 1 to 875 A6P P7S P8G A9W G10L ...     770/875
(88 %)
27 diff
(97.0 %id)
BX446025 placenta .f 302 to 1064 1 to 762       762/822
(92 %)
34 diff
(95.9 %id)
BX446958 neuroblastoma .f 302 to 1279 1 to 968       968/968
(100 %)
29 diff
(97.1 %id)
BQ300061 bladder_tumor .f 732 to 1065 333 to 1       333/352
(94 %)
7 diff
(98.1 %id)
BX423812 fetal liver, Liver .f 819 to 1731 910 to 1       910/910
(100 %)
7 diff
(99.3 %id)
AK301625 colon, tumor tissue .g 1 to 1163 1 to 1163 A40P tiling clone,   1163/1163
(100 %)
2 diff
(99.9 %id)
DC393677 colon, tumor tissue .g 1 to 592 1 to 594       594/594
(100 %)
4 diff
(99.4 %id)
BC101601 Cerebral Cortex, Heart, Lung, PCR rescuedclones .h 1 to 784 1 to 784 A60P tiling clone,   784/784
(100 %)
1 diff
(99.9 %id)
TI_927044713   .h 1 to 785 843 to 59 A60P   Submitted on the opposite strand 785/1278
(61 %)
1 diff
(100.0 %id)
TI_927044721   .h 1 to 785 61 to 845 A60P tiling clone, Submitted on the opposite strand 785/1287
(60 %)
8 diff
(99.4 %id)
TI_927044728   .h 1 to 785 65 to 849 A60P   Submitted on the opposite strand 785/1277
(61 %)
8 diff
(99.4 %id)
BC101603 Cerebral Cortex, Heart, Lung, PCR rescuedclones .h 2 to 777 1 to 776 A60P     776/776
(100 %)
1 diff
(99.9 %id)
TI_927044706   .h 2 to 785 46 to 829 A60P     784/1244
(63 %)
8 diff
(99.4 %id)
TI_927044714   .h 2 to 785 46 to 829 A60P     784/1270
(61 %)
8 diff
(99.4 %id)
TI_927044705   .h 440 to 785 405 to 60     Submitted on the opposite strand 346/783
(44 %)
2 diff
(99.8 %id)
DC396888 testis .i 1 to 578 1 to 578   tiling clone,   578/578
(100 %)
0 diff
(100 %id)
TI_2194576072   .i 437 to 1222 841 to 56 A40P   Submitted on the opposite strand 786/1285
(61 %)
1 diff
(100.0 %id)
TI_2194576454   .i 437 to 1222 64 to 849 A40P   Submitted on the opposite strand 786/1305
(60 %)
8 diff
(99.4 %id)
TI_2194578161   .i 437 to 1222 840 to 55 A40P   Submitted on the opposite strand 786/1256
(62 %)
1 diff
(100.0 %id)
TI_2194578167   .i 437 to 1222 840 to 55 A40P   Submitted on the opposite strand 786/1243
(63 %)
1 diff
(100.0 %id)
TI_2194578173   .i 437 to 1222 64 to 849 A40P   Submitted on the opposite strand 786/1291
(60 %)
9 diff
(99.4 %id)
TI_2194578179   .i 437 to 1222 65 to 850 A40P   Submitted on the opposite strand 786/1271
(61 %)
8 diff
(99.4 %id)
BC143601 Cerebral Cortex, Heart, Lung, PCR rescuedclones .i 437 to 1222 1 to 786 A40P tiling clone,   786/786
(100 %)
1 diff
(99.9 %id)
TI_2194576074   .j 1 to 645 46 to 690 A60P     645/1282
(50 %)
8 diff
(99.4 %id)
TI_2194578162   .j 1 to 645 48 to 692 A60P     645/1258
(51 %)
8 diff
(99.4 %id)
TI_2194578168   .j 1 to 645 47 to 691 A60P     645/1241
(51 %)
8 diff
(99.4 %id)
TI_2194578174   .j 1 to 645 715 to 71 A60P     645/1285
(50 %)
1 diff
(100.0 %id)
TI_2194578180   .j 1 to 645 713 to 69 A60P     645/1266
(50 %)
1 diff
(100.0 %id)
BC171730 Cerebral Cortex, Heart, Lung, PCR rescuedclones .j 1 to 645 1 to 645 A60P tiling clone,   645/645
(100 %)
1 diff
(99.9 %id)
TI_2194576456   .j 74 to 645 641 to 70       572/641
(89 %)
3 diff
(99.6 %id)
TI_149283868   .k 1 to 641 768 to 128 E2R E3G A6P T7P A8X ... tiling clone, AAA Possibly primed on the genome, locally A rich (25/26 A in genome downstream of last aligned base) 641/662
(96 %)
10 diff
(98.5 %id)
TI_149304742   .k 1 to 642 766 to 126 E2R E3G A6P T7P A8P ...     641/1038
(61 %)
15 diff
(98.6 %id)
BM971349 lung .k 39 to 630 620 to 30   AAA   591/603
(98 %)
5 diff
(99.2 %id)
BM984257 lung .k 42 to 641 618 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (25/26 A in genome downstream of last aligned base) 600/600
(100 %)
1 diff
(99.9 %id)
CN263373 embryonic stem cells, cell lines H1, H7, andH9 .k 106 to 270 1 to 165       165/165
(100 %)
0 diff
(100 %id)
BM687108 eye, optic nerve .l 1 to 309 9 to 317   tiling clone, fully sequenced, Possibly primed on the genome, locally A rich (25/26 A in genome downstream of last aligned base) 309/317
(97 %)
7 diff
(97.8 %id)
BU727555 eye, optic nerve .l 279 to 604 344 to 19   tiling clone, fully sequenced, AAA Possibly primed on the genome, locally A rich (25/26 A in genome downstream of last aligned base) 326/326
(100 %)
0 diff
(100 %id)
AW028788 fibrotheoma, ovary .m 1 to 571 574 to 0 D12M V13F Q14R E15R T16L ... tiling clone,   574/579
(99 %)
6 diff
(99.0 %id)
BM692399 eye, human retina .n-u 1 to 370 1 to 370   tiling clone, fully sequenced,   370/370
(100 %)
5 diff
(98.7 %id)
BM727200 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .n-u 9 to 269 1 to 261       261/261
(100 %)
0 diff
(100 %id)
BM681670 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .n-u 333 to 952 637 to 19 G5X AAA   619/619
(100 %)
2 diff
(99.7 %id)
BM673643 eye, human retina .n-u 352 to 952 619 to 19 exact tiling clone, fully sequenced, AAA   601/601
(100 %)
0 diff
(100 %id)
BM695751 eye, optic nerve .o 1 to 209 1 to 209   tiling clone, fully sequenced,   209/209
(100 %)
0 diff
(100 %id)
BM665121 eye, optic nerve .o 179 to 723 563 to 19   tiling clone, fully sequenced, AAA   545/545
(100 %)
0 diff
(100 %id)
DA204021 brain .p 1 to 596 2 to 597   tiling clone, capped   596/596
(100 %)
0 diff
(100 %id)
BF058071 fibrotheoma, ovary .q-u 1 to 406 418 to 12 S2N A4R C5S Q6T R7K ... tiling clone, AAA   407/411
(99 %)
19 diff
(95.4 %id)
AK094391 cerebellum Gene SHF, variant not shown       available from FLJ, Suspected internal deletion, this clone was ignored    
AK123658 brain Gene SHF, variant not shown       available from FLJ,      
AK303749 liver, tumor tissue Gene SHF, variant not shown         Suspected internal deletion, this clone was ignored    
DB297273 cerebellum Gene SHF, variant not shown         Suspected internal deletion, this clone was ignored    
DA065885 cerebellum Gene SHF, variant not shown       capped Suspected internal deletion, this clone was ignored    
CR597455 neuroblastoma Gene SHF, variant not shown         Suspected internal deletion, this clone was ignored    
BX438305 neuroblastoma Gene SHF, variant not shown       fully sequenced, Suspected internal deletion, this clone was ignored    
BX438306 neuroblastoma Gene SHF, variant not shown       fully sequenced, Suspected internal deletion, this clone was ignored    
BX457975 neuroblastoma Gene SHF, variant not shown         Suspected internal deletion, suspected internal deletion, this clone was ignored    
DB315811 brain Gene SHF, variant not shown              
DA499685 brain Gene SHF, variant not shown       capped      
DB317800 brain Gene SHF, variant not shown              
DA533422 brain Gene SHF, variant not shown       capped      
AV686686 hepatocellular carcinoma Gene SHF, variant not shown              
AV700719 hepatocellular carcinoma Gene SHF, variant not shown              
BY798115 eye Gene SHF, variant not shown              
AW157106 brain, frontal lobe Gene SHF, variant not shown       fully sequenced, AAA Possibly primed on the genome, locally A rich (25/26 A in genome downstream of last aligned base)    
AW161530 brain, frontal lobe Gene SHF, variant not shown       fully sequenced, Possibly primed on the genome, locally A rich (25/26 A in genome downstream of last aligned base)    
BI198964 brain, neuroblastoma Gene SHF, variant not shown              
BI915484 brain Gene SHF, variant not shown         Suspected internal deletion, this clone was ignored    
CA335156 posterior tongue (pooled) Gene SHF, variant not shown         Suspected internal deletion, this clone was ignored    
TI_57239211   Gene SHF, variant not shown         Suspected internal deletion, this clone was ignored    
DC412792 liver, tumor tissue Gene SHF, variant not shown         Suspected internal deletion, this clone was ignored    
DB281762 uterus Gene SHF, variant not shown       capped      
DB352539 uterus Gene SHF, variant not shown              
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n-u, .o, .p, .q-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI