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Gene C3orf25TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
59 supporting clones for gene C3orf25 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BG037012 brain, hypothalamus .a 1 to 606 1 to 614   tiling clone,   614/840
(73 %)
15 diff
(98.3 %id)
BI598760 brain, hypothalamus .a 2 to 810 1 to 812   available from MGC,   812/812
(100 %)
14 diff
(98.3 %id)
BC066975 Brain, hypothalamus .a 7 to 2159 1 to 2153 exact available from MGC, AAA   2153/2153
(100 %)
1 diff
(100.0 %id)
BC031104 Brain, hypothalamus .a 7 to 2159 1 to 2154 R167Q L168A S169L R170P L171A ... tiling clone, available from MGC, AAA   2154/2154
(100 %)
2 diff
(100.0 %id)
TI_45211077   .a 7 to 810 90 to 896       807/896
(90 %)
16 diff
(98.3 %id)
NM_207307.1   .a 7 to 2159 1 to 2153 exact RefSeq, AAA   2153/2153
(100 %)
1 diff
(100.0 %id)
DB499398.
matches multiple genes
hypothalamus .a 11 to 483 1 to 473     also hits gene kekeyu 473/473
(100 %)
1 diff
(99.8 %id)
AK127968 testis .a 22 to 2159 1 to 2138 I38F R340W I413T available from FLJ,   2138/2138
(100 %)
4 diff
(99.9 %id)
DA298493 hippocampus .a 23 to 582 2 to 562   capped   561/561
(100 %)
2 diff
(99.7 %id)
DB024134 testis .a 23 to 278 2 to 258   capped   257/257
(100 %)
1 diff
(99.7 %id)
DA523521 brain .a 26 to 606 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
DA874165 Prostate .a 28 to 587 2 to 561   capped   560/560
(100 %)
1 diff
(99.9 %id)
DA167692 amygdala .a 36 to 406 2 to 375   capped   374/374
(100 %)
4 diff
(99.0 %id)
DA266971 caudate nucleus .a 36 to 583 2 to 549   capped   548/548
(100 %)
1 diff
(99.9 %id)
DB214474 trachea .a 37 to 541 2 to 506   capped   505/505
(100 %)
1 diff
(99.9 %id)
DB001846 breast, tumor tissue .a 39 to 575 2 to 538   capped   537/537
(100 %)
1 diff
(99.9 %id)
DB020631 testis .a 39 to 304 2 to 268   capped   267/267
(100 %)
1 diff
(99.7 %id)
DA874893 Prostate .a 44 to 619 2 to 577   capped   576/576
(100 %)
1 diff
(99.9 %id)
DA436768 tongue, tumor tissue .a 49 to 645 2 to 598   capped   597/597
(100 %)
1 diff
(99.9 %id)
TI_57179713   .a 53 to 1005 64 to 1018   tiling clone,   955/1018
(93 %)
19 diff
(98.2 %id)
TI_57180286   .a 53 to 820 61 to 825       765/825
(92 %)
14 diff
(98.4 %id)
DR000575 fetal brain .a 54 to 763 1 to 710       710/710
(100 %)
5 diff
(99.3 %id)
DB039334 testis .a 55 to 625 2 to 574   capped   573/573
(100 %)
3 diff
(99.5 %id)
DB196375 trachea .a 55 to 539 2 to 486   capped   485/485
(100 %)
2 diff
(99.6 %id)
DA319477 hippocampus .a 57 to 483 2 to 429   capped   428/428
(100 %)
2 diff
(99.6 %id)
BI770443 pooled lung and spleen .a 60 to 1005 1 to 948       948/948
(100 %)
14 diff
(98.6 %id)
BI772226 pooled lung and spleen .a 60 to 820 1 to 758       758/758
(100 %)
9 diff
(98.9 %id)
DB063644 testis .a 62 to 599 2 to 541   capped   540/540
(100 %)
2 diff
(99.7 %id)
CA388925 eye, RPE/choroid .a 71 to 453 1 to 383       383/383
(100 %)
1 diff
(99.8 %id)
CN358447 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 79 to 671 1 to 593       593/593
(100 %)
3 diff
(99.5 %id)
BX280155 pooled brain, lung, testis .a 92 to 593 1 to 502       502/502
(100 %)
0 diff
(100 %id)
DB079221 testis .a 115 to 679 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DB049074 testis .a 133 to 685 2 to 554   capped   553/553
(100 %)
1 diff
(99.9 %id)
TI_1948209349   .a 169 to 942 127 to 906       780/1053
(74 %)
18 diff
(98.3 %id)
TI_1948209505   .a 169 to 935 133 to 902       770/1175
(65 %)
17 diff
(98.6 %id)
TI_1948209662   .a 169 to 1007 144 to 987       844/1103
(76 %)
20 diff
(98.2 %id)
EL734205 mixed .a 170 to 768 1 to 599       599/599
(100 %)
0 diff
(100 %id)
TI_1948209350   .a 1005 to 1887 1014 to 126       889/1242
(71 %)
31 diff
(97.6 %id)
TI_1948209663   .a 1009 to 1887 1012 to 124       889/1236
(71 %)
21 diff
(98.4 %id)
TI_1948209506   .a 1130 to 1887 888 to 124       763/1309
(58 %)
23 diff
(98.3 %id)
TI_1948209820   .a 1203 to 1887 809 to 123       687/1266
(54 %)
15 diff
(98.9 %id)
TI_149306688   .a 1424 to 2159 837 to 108   AAA   730/934
(78 %)
11 diff
(98.9 %id)
BQ639273 eye, retina .a 1465 to 1774 1 to 313       313/313
(100 %)
2 diff
(99.4 %id)
TI_149282755   .a 1468 to 2160 727 to 36   AAA   692/693
(99 %)
7 diff
(99.0 %id)
TI_149280439   .a 1484 to 2159 778 to 105   AAA   674/676
(99 %)
3 diff
(99.6 %id)
BM978759 lung, Primary Lung Epithelial Cells .a 1560 to 2159 618 to 19   AAA   600/600
(100 %)
3 diff
(99.5 %id)
BM701699 eye, optic nerve .a 1571 to 2159 1 to 589   fully sequenced, AAA   589/589
(100 %)
1 diff
(99.9 %id)
BU679218 lung, Primary Lung Epithelial Cells .a 1573 to 2159 604 to 19   AAA   586/586
(100 %)
2 diff
(99.7 %id)
CA388924 eye, RPE/choroid .a 1581 to 2159 596 to 18   AAA   579/579
(100 %)
0 diff
(100 %id)
BM666560 eye, optic nerve .a 1599 to 2159 579 to 19   fully sequenced, AAA   561/561
(100 %)
0 diff
(100 %id)
DB336296 testis .a 1631 to 2159 530 to 1       530/530
(100 %)
1 diff
(99.9 %id)
AW138740   .a 1703 to 2159 474 to 18   AAA   457/457
(100 %)
0 diff
(100 %id)
AI955723 adenocarcinoma, Pancreas .a 1787 to 2159 404 to 31   AAA   374/374
(100 %)
10 diff
(97.4 %id)
AK096099 Liver .b 1 to 3248 2 to 3249 R23H tiling clone, available from FLJ,   3249/3249
(100 %)
1 diff
(100.0 %id)
DA637137 Liver .b 1 to 544 2 to 545   capped   544/546
(99 %)
2 diff
(99.7 %id)
AK057281 testis .b 1308 to 3248 1 to 1941   available from FLJ,   1941/1941
(100 %)
0 diff
(100 %id)
DB020592 testis .b 1309 to 1875 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
CR749128   .b 2279 to 2717 1 to 439       439/448
(97 %)
3 diff
(99.4 %id)
BU608646 Human Lung Epithelial cells, lung .b 2465 to 3248 799 to 19   AAA   781/781
(100 %)
4 diff
(99.5 %id)
DB335833 testis .b 2720 to 3248 530 to 1       530/530
(100 %)
1 diff
(99.9 %id)
AL133011 testis .c 1 to 5606 1 to 5602 exact tiling clone, available from DKFZ, AAA   5602/5602
(100 %)
4 diff
(100.0 %id)
TI_57242297   .d 1 to 619 29 to 646 G61A D89A Y131H L133* tiling clone,   618/646
(95 %)
13 diff
(98.0 %id)
BI917233 brain .d 2 to 619 1 to 617 G61A D89A Y131H L133* tiling clone,   617/617
(100 %)
11 diff
(98.3 %id)
BI822145 pooled brain, lung, testis Gene C3orf25, variant not shown         This clone was ignored    
TI_57201760   Gene C3orf25, variant not shown         This clone was ignored    
DB140686 thymus Gene C3orf25, variant not shown       capped This clone was ignored    
DB345343 thymus Gene C3orf25, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C