| cDNA accession Links to the sequence |
Tissue most 5' clones in red |
Match mRNA |
From bp to bp in mRNA |
From bp to bp in accs. |
Clone encodes complete protein (with AA variation) |
Features | Anomalies detected by AceView |
Accession match over (% length) |
Base differences relative to genome (% identity) |
| NM_022098.2 | .a | 1 to 3060 | 1 to 3060 | exact | RefSeq, | 3060/3060 (100 %) | 0 diff (100 %id) | ||
| AL365514 | .a | 9 to 2773 | 1 to 2765 | exact | tiling clone, | 2765/2765 (100 %) | 0 diff (100 %id) | ||
| BC001681 | Lung, small cell carcinoma | .a | 25 to 1735 | 1 to 1711 | L486F | available from MGC, AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 1711/1711 (100 %) | 1 diff (100.0 %id) |
| BC004989 | Lung, small cell carcinoma | .a | 25 to 1735 | 1 to 1711 | exact | available from MGC, AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 1711/1711 (100 %) | 0 diff (100 %id) |
| BE206978 | lung, small cell carcinoma | .a | 26 to 665 | 1 to 640 | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 640/640 (100 %) | 9 diff (98.6 %id) | ||
| AK313770 | testis | .a | 31 to 1616 | 1 to 1586 | exact | 1586/1586 (100 %) | 0 diff (100 %id) | ||
| DN995399 | breast cancer, Mammary gland (cancer tissue) | .a | 31 to 627 | 1 to 597 | 597/597 (100 %) | 7 diff (98.9 %id) | |||
| DB036063 | testis | .a | 32 to 584 | 2 to 554 | capped | 553/553 (100 %) | 0 diff (100 %id) | ||
| AU280088 | .a | 38 to 571 | 1 to 534 | 534/536 (99 %) | 1 diff (99.9 %id) | ||||
| CR456442 | .a | 56 to 1669 | 1 to 1614 | exact | 1614/1614 (100 %) | 0 diff (100 %id) | |||
| BF312694 | brain, neuroblastoma | .a | 56 to 536 | 1 to 483 | 483/485 (99 %) | 9 diff (98.2 %id) | |||
| BF315687 | brain, neuroblastoma | .a | 56 to 754 | 1 to 693 | 693/891 (77 %) | 10 diff (98.9 %id) | |||
| BI199865 | brain, neuroblastoma | .a | 56 to 884 | 1 to 827 | 827/1050 (78 %) | 27 diff (97.5 %id) | |||
| DB028060 | testis | .a | 66 to 599 | 2 to 535 | capped | 534/534 (100 %) | 0 diff (100 %id) | ||
| DB270543 | uterus | .a | 66 to 607 | 2 to 543 | capped | 542/542 (100 %) | 0 diff (100 %id) | ||
| TI_57197119 | .a | 68 to 883 | 20 to 837 | 818/874 (93 %) | 20 diff (97.8 %id) | ||||
| BE261625 | brain, neuroblastoma | .a | 76 to 558 | 1 to 483 | 483/485 (99 %) | 1 diff (99.8 %id) | |||
| BI820933 | pooled brain, lung, testis | .a | 78 to 883 | 1 to 808 | 808/845 (95 %) | 16 diff (98.2 %id) | |||
| CD631181 | .a | 80 to 196 | 8 to 124 | 117/125 (93 %) | 7 diff (94.4 %id) | ||||
| CD631182 | .a | 80 to 194 | 115 to 1 | 115/122 (94 %) | 0 diff (100 %id) | ||||
| CD631183 | .a | 80 to 196 | 8 to 124 | 117/125 (93 %) | 7 diff (94.4 %id) | ||||
| CD631184 | .a | 80 to 194 | 114 to 1 | 114/121 (94 %) | 1 diff (99.2 %id) | ||||
| CD631185 | .a | 80 to 196 | 8 to 123 | 116/124 (93 %) | 8 diff (93.6 %id) | ||||
| CD631186 | .a | 80 to 194 | 116 to 1 | 116/123 (94 %) | 2 diff (98.4 %id) | ||||
| CD631189 | .a | 80 to 196 | 8 to 124 | 117/125 (93 %) | 7 diff (94.4 %id) | ||||
| CD631190 | .a | 80 to 192 | 112 to 1 | 112/119 (94 %) | 1 diff (99.2 %id) | ||||
| TI_57174719 | .a | 82 to 758 | 36 to 717 | 682/717 (95 %) | 17 diff (97.7 %id) | ||||
| BI827371 | brain, medulla | .a | 83 to 758 | 1 to 682 | 682/682 (100 %) | 14 diff (98.0 %id) | |||
| CD631187 | .a | 90 to 196 | 1 to 107 | 107/108 (99 %) | 3 diff (97.3 %id) | ||||
| CD631188 | .a | 90 to 196 | 107 to 1 | 107/107 (100 %) | 1 diff (99.1 %id) | ||||
| CR457396 | .a | 93 to 1614 | 1 to 1522 | 1522/1524 (99 %) | 2 diff (99.9 %id) | ||||
| CV026606 | mixed | .a | 93 to 669 | 1 to 577 | 577/577 (100 %) | 8 diff (98.7 %id) | |||
| CU013328 | Synthetic constructs | .a | 93 to 1620 | 20 to 1547 | exact | 1528/1555 (98 %) | 14 diff (99.1 %id) | ||
| CU013040 | Synthetic constructs | .a | 93 to 1618 | 20 to 1545 | exact | 1526/1558 (97 %) | 7 diff (99.6 %id) | ||
| TI_1948080916 | .a | 93 to 878 | 127 to 913 | fully sequenced, | 787/913 (86 %) | 16 diff (98.3 %id) | |||
| TI_1948081095 | .a | 93 to 885 | 131 to 924 | 794/1311 (60 %) | 17 diff (98.8 %id) | ||||
| TI_1948081270 | .a | 93 to 879 | 130 to 916 | 787/1257 (62 %) | 11 diff (99.2 %id) | ||||
| TI_1948081447 | .a | 93 to 840 | 133 to 880 | fully sequenced, | 748/880 (85 %) | 8 diff (99.1 %id) | |||
| DW461981 | Liver | .a | 127 to 236 | 12 to 121 | 110/121 (90 %) | 6 diff (95.1 %id) | |||
| TI_1948081448 | .a | 810 to 1618 | 939 to 120 | fully sequenced, | 820/939 (87 %) | 16 diff (98.3 %id) | |||
| TI_1948080917 | .a | 847 to 1618 | 894 to 120 | fully sequenced, | 775/894 (86 %) | 5 diff (99.5 %id) | |||
| TI_1948081271 | .a | 882 to 1618 | 855 to 117 | 739/1282 (57 %) | 2 diff (99.9 %id) | ||||
| TI_1948081096 | .a | 887 to 1618 | 854 to 120 | 735/1452 (50 %) | 10 diff (99.4 %id) | ||||
| CD359071 | testis | .a | 1000 to 1832 | 1 to 840 | 840/872 (96 %) | 8 diff (99.1 %id) | |||
| BX099353 | liver and spleen | .a | 1194 to 1928 | 737 to 1 | Submitted on the opposite strand | 737/737 (100 %) | 2 diff (99.8 %id) | ||
| AW732081 | lung, small cell carcinoma | .a | 1356 to 1735 | 400 to 21 | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 380/380 (100 %) | 3 diff (99.3 %id) | |
| AI479803 | anaplastic oligodendroglioma, brain | .a | 1474 to 2123 | 656 to 7 | 650/660 (98 %) | 0 diff (100 %id) | |||
| BE877442 | large cell carcinoma, undifferentiated, lung | .a | 1492 to 2141 | 1 to 648 | 648/871 (74 %) | 8 diff (99.1 %id) | |||
| AA382300 | testis | .a | 1494 to 1735 | 1 to 242 | 242/242 (100 %) | 0 diff (100 %id) | |||
| CX752771 | Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass | .a | 1514 to 2300 | 1 to 781 | Submitted on the opposite strand | 781/784 (99 %) | 14 diff (98.3 %id) | ||
| EC539254 | Prostate | .a | 1631 to 1715 | 1 to 85 | 85/85 (100 %) | 0 diff (100 %id) | |||
| AA700729 | liver and spleen | .a | 1858 to 2326 | 469 to 1 | 469/469 (100 %) | 0 diff (100 %id) | |||
| AA699699 | liver and spleen | .a | 1897 to 2326 | 430 to 1 | 430/430 (100 %) | 0 diff (100 %id) | |||
| R85448 | liver and spleen | .a | 1950 to 2319 | 377 to 3 | 375/377 (99 %) | 0 diff (100 %id) | |||
| EC546488 | Prostate | .a | 1960 to 2059 | 16 to 113 | 98/113 (86 %) | 6 diff (94.7 %id) | |||
| EC529688 | Prostate | .a | 2207 to 2314 | 1 to 107 | 107/107 (100 %) | 5 diff (95.4 %id) | |||
| AI619443 | moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus | .a | 2253 to 2683 | 443 to 13 | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 431/431 (100 %) | 11 diff (97.5 %id) | |
| AI623350 | adenocarcinoma, Pancreas | .a | 2257 to 2686 | 430 to 1 | 430/430 (100 %) | 16 diff (96.3 %id) | |||
| AI292218 | carcinoid, lung | .a | 2293 to 2747 | 455 to 1 | 455/455 (100 %) | 14 diff (97.0 %id) | |||
| BU631357 | cell lines, Chondrosarcoma | .a | 2362 to 3073 | 713 to 1 | tiling clone, | 713/713 (100 %) | 6 diff (99.2 %id) | ||
| AI446638 | poorly differentiated adenocarcinoma withsignet ring cell features, stomach | .a | 2662 to 3060 | 399 to 1 | tiling clone, | 399/399 (100 %) | 0 diff (100 %id) | ||
| AI311557 | 2 pooled tumors (clear cell type), Kidney | .a | 2665 to 3067 | 403 to 1 | 403/403 (100 %) | 13 diff (96.8 %id) | |||
| DB022029 | testis | .b | 1 to 555 | 2 to 559 | tiling clone, capped | 558/563 (99 %) | 5 diff (99.2 %id) | ||
| AK301758 | testis | .b | 23 to 2271 | 1 to 2249 | exact | tiling clone, | 2249/2249 (100 %) | 1 diff (100.0 %id) | |
| DB023743 | testis | .b | 24 to 543 | 2 to 522 | capped | 521/521 (100 %) | 1 diff (99.9 %id) | ||
| CD654136 | Embryonic Stem cells | .b | 555 to 1226 | 1 to 670 | 670/717 (93 %) | 9 diff (98.8 %id) | |||
| BU186825 | large cell carcinoma, lung | .b | 1028 to 1480 | 1 to 460 | 460/727 (63 %) | 9 diff (98.8 %id) | |||
| CD558137 | testis | .b | 1281 to 1610 | 1 to 332 | 332/886 (37 %) | 3 diff (99.7 %id) | |||
| DB336029 | testis | .b | 1328 to 1876 | 549 to 1 | 549/549 (100 %) | 0 diff (100 %id) | |||
| FN077010 | breast carcinoma | .b | 2166 to 2235 | 1 to 69 | 69/71 (97 %) | 2 diff (97.2 %id) | |||
| DA238175 | brain | .c | 1 to 534 | 2 to 536 | tiling clone, capped | 535/535 (100 %) | 1 diff (99.9 %id) | ||
| AL834310 | testis | .c | 30 to 2765 | 1 to 2736 | exact | tiling clone, available from DKFZ, AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 2736/2736 (100 %) | 0 diff (100 %id) |
| TI_57170195 | .d | 1 to 684 | 30 to 713 | tiling clone, | 684/713 (95 %) | 7 diff (99.1 %id) | |||
| BI825148 | brain, medulla | .d | 9 to 684 | 1 to 675 | tiling clone, | 675/675 (100 %) | 1 diff (99.9 %id) | ||
| BE788822 | large cell carcinoma, lung | .d | 640 to 1272 | 1 to 631 | tiling clone, | 631/631 (100 %) | 4 diff (99.4 %id) | ||
| AK301635 | esophagus, tumor tissue | .e | 1 to 1042 | 3 to 1044 | exact | tiling clone, | 1044/1044 (100 %) | 2 diff (99.9 %id) | |
| DC393781 | esophageal, tumor tissue | .e | 1 to 562 | 3 to 564 | 564/564 (100 %) | 2 diff (99.7 %id) | |||
| DB251140 | uterus | .e | 1 to 508 | 2 to 509 | capped | 508/508 (100 %) | 0 diff (100 %id) | ||
| CN484448 | eye | .e | 12 to 630 | 1 to 619 | 619/619 (100 %) | 5 diff (99.2 %id) | |||
| DA912613 | .e | 16 to 579 | 2 to 565 | capped | 564/564 (100 %) | 1 diff (99.9 %id) | |||
| BC001208 | Brain, neuroblastoma | .f | 1 to 1084 | 4 to 1087 | exact | tiling clone, available from MGC, AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 1087/1087 (100 %) | 1 diff (100.0 %id) |
| BI260841 | cervical carcinoma cell line, cervix | .g | 1 to 805 | 1 to 806 | E62R V63* | tiling clone, | 806/807 (99 %) | 13 diff (98.4 %id) | |
| DW416315 | Liver | .g | 582 to 881 | 10 to 309 | tiling clone, | 300/309 (97 %) | 12 diff (96.2 %id) | ||
| AA703314 | liver and spleen | .g | 638 to 1114 | 476 to 1 | tiling clone, | 476/476 (100 %) | 6 diff (98.8 %id) | ||
| AK310502 | testis | .h | 1 to 1441 | 1 to 1441 | exact | tiling clone, | 1441/1441 (100 %) | 0 diff (100 %id) | |
| DB093050 | testis | .h | 2 to 551 | 2 to 553 | capped | 552/552 (100 %) | 2 diff (99.7 %id) | ||
| DB024681 | testis | .h | 8 to 565 | 2 to 559 | capped | 558/558 (100 %) | 0 diff (100 %id) | ||
| BI832228 | brain, medulla | .h | 10 to 695 | 10 to 697 | 688/698 (98 %) | 9 diff (98.8 %id) | |||
| TI_57175980 | .h | 10 to 695 | 10 to 697 | 688/698 (98 %) | 9 diff (98.8 %id) | ||||
| BM800729 | melanotic melanoma, skin | .i-u | 1 to 839 | 23 to 862 | exact | tiling clone, available from MGC, | 840/1024 (82 %) | 15 diff (98.6 %id) | |
| BC037424 | Skin, melanotic melanoma. | .i-u | 2 to 936 | 1 to 935 | exact | tiling clone, available from MGC, AAA | 935/935 (100 %) | 0 diff (100 %id) | |
| DB477602 | hippocampus | .i-u | 9 to 503 | 1 to 495 | 495/495 (100 %) | 2 diff (99.6 %id) | |||
| AV737639 | cord Blood | .i-u | 17 to 553 | 43 to 578 | 536/614 (87 %) | 18 diff (97.1 %id) | |||
| BX119041 | .i-u | 18 to 409 | 1 to 392 | 392/392 (100 %) | 0 diff (100 %id) | ||||
| BE617460 | adenocarcinoma, colon | .i-u | 97 to 913 | 1 to 806 | 806/888 (90 %) | 36 diff (96.0 %id) | |||
| BE617907 | adenocarcinoma, colon | .i-u | 101 to 889 | 791 to 1 | 791/791 (100 %) | 4 diff (99.5 %id) | |||
| BM466568 | eye, retinoblastoma | .i-u | 139 to 937 | 19 to 825 | 807/938 (86 %) | 18 diff (98.1 %id) | |||
| CA314208 | Human Lung Epithelial cells, lung | .i-u | 243 to 936 | 708 to 19 | AAA | 690/690 (100 %) | 5 diff (99.3 %id) | ||
| CB409178 | maxilla, pooled | .i-u | 334 to 924 | 1 to 591 | 591/591 (100 %) | 1 diff (99.9 %id) | |||
| CB409437 | maxilla, pooled | .i-u | 334 to 915 | 1 to 582 | 582/582 (100 %) | 1 diff (99.9 %id) | |||
| BQ380466 | uterus_tumor | .i-u | 337 to 752 | 1 to 417 | 417/417 (100 %) | 4 diff (99.1 %id) | |||
| BE940681 | uterus_tumor | .i-u | 341 to 791 | 13 to 459 | 447/460 (97 %) | 12 diff (97.4 %id) | |||
| BE674036 | carcinoid, lung | .i-u | 346 to 937 | 596 to 5 | 592/596 (99 %) | 0 diff (100 %id) | |||
| BQ380465 | uterus_tumor | .i-u | 383 to 731 | 360 to 16 | 345/360 (95 %) | 0 diff (100 %id) | |||
| AA775784 | whole brain | .i-u | 399 to 937 | 542 to 1 | 542/542 (100 %) | 31 diff (94.3 %id) | |||
| AW005574 | anaplastic oligodendroglioma, brain | .i-u | 412 to 937 | 527 to 2 | 526/527 (99 %) | 0 diff (100 %id) | |||
| AI885037 | anaplastic oligodendroglioma, brain | .i-u | 434 to 935 | 517 to 16 | AAA | 502/502 (100 %) | 1 diff (99.9 %id) | ||
| AI127653 | uterus | .i-u | 462 to 942 | 480 to 2 | 479/480 (99 %) | 0 diff (100 %id) | |||
| AI471784 | Kidney | .i-u | 467 to 936 | 470 to 1 | 470/470 (100 %) | 0 diff (100 %id) | |||
| AW002166 | thymus, pooled | .i-u | 531 to 937 | 411 to 4 | 408/411 (99 %) | 0 diff (100 %id) | |||
| AI652199 | pooled germ cell tumors | .i-u | 543 to 936 | 394 to 1 | 394/396 (99 %) | 1 diff (99.8 %id) | |||
| AA398384 | .i-u | 550 to 935 | 389 to 4 | 386/389 (99 %) | 0 diff (100 %id) | ||||
| DB546196 | hippocampus | .i-u | 608 to 936 | 1 to 329 | Submitted on the opposite strand | 329/329 (100 %) | 2 diff (99.4 %id) | ||
| AW593748 | pooled germ cell tumors | .i-u | 675 to 936 | 262 to 1 | 262/262 (100 %) | 0 diff (100 %id) | |||
| C21259 | .i-u | 758 to 940 | 1 to 183 | 183/183 (100 %) | 0 diff (100 %id) | ||||
| BP346902 | brain | .j | 1 to 575 | 8 to 582 | exact | tiling clone, | 582/582 (100 %) | 1 diff (99.9 %id) | |
| CN257899 | embryonic stem cells, DMSO-treated H9 cellline | .k | -8 to 451 | 1 to 460 | exact | tiling clone, | 460/460 (100 %) | 0 diff (100 %id) | |
| BG497476 | adenocarcinoma, Prostate | .k | 36 to 671 | 1 to 636 | 636/636 (100 %) | 1 diff (99.9 %id) | |||
| CN257897 | embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells | .k | 82 to 805 | 1 to 724 | tiling clone, | 724/724 (100 %) | 1 diff (99.9 %id) | ||
| N23017 | melanocyte | .l | 1 to 490 | 495 to 2 | N16K A17C V18Q A19V L20X ... | tiling clone, | 492/495 (99 %) | 13 diff (97.4 %id) | |
| FN086918 | breast carcinoma | .m | 1 to 90 | 89 to 1 | tiling clone, | Submitted on the opposite strand | 89/89 (100 %) | 2 diff (97.8 %id) | |
| BU533420 | mixed (pool of 40 RNAs) | .m | 23 to 568 | 1 to 546 | exact | 546/551 (99 %) | 3 diff (99.5 %id) | ||
| BG339057 | leiomyosarcoma cell line, uterus | .m | 25 to 476 | 1 to 452 | exact | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 452/452 (100 %) | 1 diff (99.8 %id) |
| BU533405 | mixed (pool of 40 RNAs) | .m | 29 to 566 | 1 to 538 | exact | 538/539 (99 %) | 2 diff (99.7 %id) | ||
| BU597842 | mixed (pool of 40 RNAs) | .m | 35 to 568 | 1 to 534 | exact | 534/570 (93 %) | 7 diff (98.8 %id) | ||
| BU861191 | mixed (pool of 40 RNAs) | .m | 35 to 564 | 1 to 530 | exact | 530/563 (94 %) | 2 diff (99.7 %id) | ||
| BU941262 | mixed (pool of 40 RNAs) | .m | 35 to 549 | 1 to 515 | exact | 515/545 (94 %) | 2 diff (99.7 %id) | ||
| CD051073 | embryonic trophoblasts, made from WA01 stemcells | .m | 38 to 566 | 23 to 550 | A3V | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 528/550 (96 %) | 6 diff (99.0 %id) |
| BU958173 | mixed (pool of 40 RNAs) | .m | 38 to 568 | 1 to 531 | A43S | 531/564 (94 %) | 6 diff (99.0 %id) | ||
| CD172680 | embryonic stem cells, WA01, passage 38 | .m | 39 to 566 | 18 to 544 | A2R A3F A4R M5W D6M ... | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 527/544 (96 %) | 6 diff (98.9 %id) |
| DA528969 | brain | .m | 39 to 633 | 2 to 596 | exact | tiling clone, capped | 595/595 (100 %) | 0 diff (100 %id) | |
| CD249363 | embryonic stem cells, WA01, passage 38 | .m | 40 to 565 | 10 to 533 | exact | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 524/533 (98 %) | 7 diff (98.7 %id) |
| BF956282 | nervous_normal | .m | 41 to 445 | 1 to 405 | exact | 405/405 (100 %) | 4 diff (99.1 %id) | ||
| BU858782 | mixed (pool of 40 RNAs) | .m | 42 to 568 | 1 to 527 | I44L | 527/557 (94 %) | 6 diff (99.0 %id) | ||
| CB999822 | Pooled-Skin | .m | 42 to 564 | 1 to 523 | exact | 523/527 (99 %) | 3 diff (99.5 %id) | ||
| CN305890 | embryonic stem cells, DMSO-treated H9 cellline | .m | 43 to 504 | 1 to 462 | exact | 462/462 (100 %) | 5 diff (99.0 %id) | ||
| BU932751 | mixed (pool of 40 RNAs) | .m | 43 to 567 | 1 to 525 | exact | 525/527 (99 %) | 4 diff (99.3 %id) | ||
| BG534675 | lung | .m | 44 to 568 | 1 to 526 | N98S | 526/653 (80 %) | 6 diff (99.1 %id) | ||
| BG777485 | adenocarcinoma, Prostate | .m | 44 to 529 | 1 to 487 | exact | 487/488 (99 %) | 4 diff (99.2 %id) | ||
| CB857843 | anterior tongue, pooled | .m | 44 to 521 | 1 to 478 | exact | 478/478 (100 %) | 3 diff (99.4 %id) | ||
| CD523457 | pooled | .m | 44 to 567 | 1 to 525 | exact | 525/531 (98 %) | 5 diff (99.1 %id) | ||
| CK003869 | brain/CNS, Human Brain - Cerebellar Cortex | .m | 44 to 564 | 1 to 521 | exact | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 521/521 (100 %) | 3 diff (99.5 %id) |
| CD388268 | embryonic trophoblasts, made from WA01 stemcells | .m | 45 to 571 | 12 to 537 | exact | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 526/537 (97 %) | 6 diff (98.9 %id) |
| CF124625 | CNCAP(3)T-225 cell line, Prostate | .m | 45 to 566 | 38 to 559 | exact | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 522/559 (93 %) | 7 diff (98.8 %id) |
| BU601080 | mixed (pool of 40 RNAs) | .m | 45 to 568 | 1 to 524 | exact | 524/555 (94 %) | 3 diff (99.5 %id) | ||
| BU954591 | mixed (pool of 40 RNAs) | .m | 45 to 565 | 1 to 521 | exact | 521/523 (99 %) | 4 diff (99.3 %id) | ||
| TI_154184975 | .m | 45 to 566 | 107 to 628 | exact | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 522/552 (94 %) | 7 diff (98.8 %id) | |
| AV715190 | .m | 46 to 566 | 1 to 521 | exact | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 521/521 (100 %) | 3 diff (99.5 %id) | |
| BU594675 | mixed (pool of 40 RNAs) | .m | 46 to 568 | 1 to 523 | exact | 523/527 (99 %) | 4 diff (99.3 %id) | ||
| BF679205 | Prostate | .m | 47 to 565 | 1 to 512 | I37M V38W V39L D40I N41T ... | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 512/512 (100 %) | 9 diff (98.3 %id) |
| BG531117 | embryonal carcinoma, testis | .m | 47 to 450 | 1 to 403 | exact | 403/403 (100 %) | 8 diff (98.1 %id) | ||
| BM757406 | Ascites, stomach | .m | 47 to 562 | 14 to 529 | exact | 516/516 (100 %) | 0 diff (100 %id) | ||
| CD175085 | embryonic stem cells, WA01, passage 38 | .m | 48 to 566 | 23 to 540 | exact | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 518/540 (95 %) | 7 diff (98.8 %id) |
| CR456560 | .m | 48 to 582 | 1 to 535 | exact | 535/535 (100 %) | 0 diff (100 %id) | |||
| DW411008 | Liver | .m | 48 to 361 | 18 to 331 | 314/331 (94 %) | 6 diff (98.2 %id) | |||
| BC017370 | Brain, glioblastoma | .m | 48 to 567 | 5 to 524 | exact | available from MGC, AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 520/521 (99 %) | 2 diff (99.7 %id) |
| BG478622 | melanotic melanoma, skin | .m | 48 to 565 | 1 to 518 | exact | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 518/518 (100 %) | 0 diff (100 %id) |
| BG705958 | brain, hypothalamus | .m | 48 to 566 | 1 to 519 | exact | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 519/519 (100 %) | 4 diff (99.3 %id) |
| CB121873 | Liver | .m | 48 to 289 | 1 to 242 | 242/242 (100 %) | 1 diff (99.6 %id) | |||
| NM_014248.2 | .m | 48 to 568 | 1 to 521 | exact | RefSeq, | 521/521 (100 %) | 0 diff (100 %id) | ||
| BI198015 | brain, neuroblastoma | .m | 49 to 568 | 1 to 527 | exact | 527/546 (96 %) | 8 diff (98.6 %id) | ||
| BU601301 | mixed (pool of 40 RNAs) | .m | 50 to 568 | 1 to 519 | exact | 519/521 (99 %) | 5 diff (99.1 %id) | ||
| BU955646 | mixed (pool of 40 RNAs) | .m | 50 to 565 | 1 to 516 | exact | 516/517 (99 %) | 4 diff (99.3 %id) | ||
| DT220847 | brain | .m | 53 to 791 | 1 to 738 | exact | 738/738 (100 %) | 1 diff (99.9 %id) | ||
| DB475306 | hippocampus | .m | 53 to 528 | 1 to 476 | exact | 476/476 (100 %) | 0 diff (100 %id) | ||
| CB137618 | Liver | .m | 53 to 565 | 1 to 512 | H82R | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 512/512 (100 %) | 5 diff (99.1 %id) |
| BP308845 | brain | .m | 53 to 565 | 1 to 513 | exact | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 513/513 (100 %) | 0 diff (100 %id) |
| DA003707 | .m | 54 to 627 | 2 to 576 | D8G V70C A71R W72M V74S ... | capped | 575/575 (100 %) | 2 diff (99.7 %id) | ||
| DA466653 | cord Blood | .m | 54 to 566 | 2 to 515 | exact | capped | 514/524 (98 %) | 2 diff (99.7 %id) | |
| BU601181 | mixed (pool of 40 RNAs) | .m | 54 to 566 | 1 to 513 | exact | 513/513 (100 %) | 4 diff (99.3 %id) | ||
| BU532840 | mixed (pool of 40 RNAs) | .m | 54 to 571 | 1 to 518 | exact | 518/527 (98 %) | 3 diff (99.5 %id) | ||
| AK315722 | testis | .m | 55 to 392 | 1 to 338 | exact | 338/338 (100 %) | 0 diff (100 %id) | ||
| AL711573 | human skeletal muscle | .m | 55 to 567 | 10 to 522 | exact | 513/513 (100 %) | 0 diff (100 %id) | ||
| BP317451 | pericardium | .m | 55 to 566 | 1 to 513 | exact | 513/521 (98 %) | 4 diff (99.3 %id) | ||
| DA150258 | amygdala | .m | 56 to 290 | 2 to 236 | capped | 235/235 (100 %) | 1 diff (99.6 %id) | ||
| DB493781 | hypothalamus | .m | 56 to 562 | 1 to 507 | D8G | 507/507 (100 %) | 3 diff (99.5 %id) | ||
| DB493801 | hypothalamus | .m | 56 to 546 | 1 to 491 | D8G | 491/497 (98 %) | 4 diff (99.2 %id) | ||
| DB501198 | hypothalamus | .m | 56 to 550 | 1 to 495 | D8G | 495/495 (100 %) | 3 diff (99.4 %id) | ||
| BM459634 | leiomyosarcoma, uterus | .m | 56 to 954 | 1 to 899 | exact | tiling clone, | 899/904 (99 %) | 8 diff (99.2 %id) | |
| DB090580 | testis | .m | 56 to 568 | 2 to 514 | exact | capped | 513/519 (98 %) | 1 diff (99.9 %id) | |
| BF821575 | kidney_tumor | .m | 57 to 332 | 274 to 1 | Submitted on the opposite strand | 274/274 (100 %) | 1 diff (99.7 %id) | ||
| BE735168 | choriocarcinoma, placenta | .m | 57 to 566 | 1 to 510 | A4L | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 510/510 (100 %) | 7 diff (98.7 %id) |
| CU013448 | Synthetic constructs | .m | 57 to 389 | 11 to 343 | 333/358 (93 %) | 6 diff (98.4 %id) | |||
| CU013160 | Synthetic constructs | .m | 57 to 396 | 11 to 350 | exact | 340/361 (94 %) | 12 diff (96.7 %id) | ||
| BP316685 | pericardium | .m | 59 to 566 | 1 to 508 | V39D E66G R86C | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 508/508 (100 %) | 9 diff (98.3 %id) |
| AF140598 | .m | 60 to 566 | 1 to 508 | exact | 508/508 (100 %) | 2 diff (99.7 %id) | |||
| BX283972 | choriocarcinoma, placenta | .m | 60 to 532 | 1 to 473 | exact | 473/473 (100 %) | 1 diff (99.8 %id) | ||
| CD673786 | eye, lens | .m | 60 to 566 | 1 to 507 | R46M V74A | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 507/507 (100 %) | 4 diff (99.3 %id) |
| BP420485 | small intestine | .m | 60 to 568 | 8 to 516 | exact | Submitted on the opposite strand | 509/518 (98 %) | 7 diff (98.7 %id) | |
| BG337472 | leiomyosarcoma cell line, uterus | .m | 60 to 566 | 1 to 507 | exact | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 507/507 (100 %) | 1 diff (99.9 %id) |
| AA379991 | skin | .m | 61 to 272 | 1 to 211 | 211/211 (100 %) | 2 diff (99.1 %id) | |||
| BC001466 | Placenta, choriocarcinoma | .m | 61 to 566 | 1 to 506 | exact | available from MGC, AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 506/506 (100 %) | 0 diff (100 %id) |
| CN305892 | embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 | .m | 61 to 568 | 1 to 508 | exact | 508/509 (99 %) | 7 diff (98.7 %id) | ||
| D52876 | .m | 62 to 253 | 1 to 192 | fully sequenced, | 192/192 (100 %) | 0 diff (100 %id) | |||
| CD686718 | normal nasopharynx | .m | 63 to 328 | 1 to 266 | 266/266 (100 %) | 4 diff (98.5 %id) | |||
| BU729963 | eye, Retina Foveal and Macular | .m | 63 to 565 | 521 to 19 | exact | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 503/515 (97 %) | 0 diff (100 %id) |
| BM715215 | eye, human retina | .m | 63 to 565 | 1 to 503 | exact | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 503/503 (100 %) | 0 diff (100 %id) |
| TI_153984959 | .m | 63 to 565 | 55 to 557 | exact | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 503/503 (100 %) | 0 diff (100 %id) | |
| BE566728 | bladder, carcinoma, cell line | .m | 64 to 554 | 1 to 489 | K25N W27V N28E A29C V30S ... | 487/803 (60 %) | 20 diff (97.6 %id) | ||
| BQ220259 | melanotic melanoma, skin | .m | 64 to 568 | 1 to 505 | N14T S15A G16A A17R G18A ... | 505/509 (99 %) | 3 diff (99.5 %id) | ||
| AA345277 | gall bladder | .m | 65 to 381 | 1 to 316 | 316/316 (100 %) | 1 diff (99.7 %id) | |||
| AF142059 | .m | 66 to 392 | 1 to 327 | exact | 327/327 (100 %) | 0 diff (100 %id) | |||
| BE737604 | brain, glioblastoma | .m | 67 to 568 | 1 to 493 | 493/700 (70 %) | 11 diff (98.5 %id) | |||
| BE738587 | brain, glioblastoma | .m | 67 to 514 | 448 to 1 | 448/448 (100 %) | 5 diff (98.9 %id) | |||
| AI750496 | Bone, Hip | .m | 67 to 506 | 1 to 440 | 440/440 (100 %) | 7 diff (98.5 %id) | |||
| BM711445 | eye, fetal eyes | .m | 67 to 553 | 1 to 487 | fully sequenced, | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 487/487 (100 %) | 4 diff (99.2 %id) | |
| BE728298 | melanotic melanoma, skin | .m | 68 to 564 | 1 to 498 | 498/498 (100 %) | 3 diff (99.4 %id) | |||
| BF684301 | leiomyosarcoma cell line, uterus | .m | 68 to 566 | 1 to 499 | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 499/499 (100 %) | 1 diff (99.8 %id) | |
| CN305893 | embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 | .m | 69 to 566 | 1 to 498 | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 498/498 (100 %) | 0 diff (100 %id) | |
| CN305897 | embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 | .m | 69 to 321 | 1 to 253 | 253/253 (100 %) | 0 diff (100 %id) | |||
| BE298380 | muscle, rhabdomyosarcoma | .m | 69 to 734 | 1 to 660 | 660/748 (88 %) | 19 diff (97.5 %id) | |||
| CN305889 | embryonic stem cells, DMSO-treated H9 cellline | .m | 70 to 565 | 1 to 496 | 496/496 (100 %) | 6 diff (98.8 %id) | |||
| AV751916 | Pituitary | .m | 70 to 566 | 20 to 516 | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 497/516 (96 %) | 6 diff (98.9 %id) | |
| CN305887 | embryonic stem cells, DMSO-treated H9 cellline | .m | 72 to 568 | 1 to 497 | 497/503 (98 %) | 5 diff (99.1 %id) | |||
| BM045028 | carcinoma, cell line, Prostate | .m | 72 to 894 | 1 to 826 | 826/826 (100 %) | 5 diff (99.4 %id) | |||
| BM808337 | amelanotic melanoma, cell line, skin | .m | 72 to 566 | 1 to 495 | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 495/495 (100 %) | 0 diff (100 %id) | |
| BU957127 | adenocarcinoma, cell line, breast | .m | 72 to 565 | 1 to 494 | 494/495 (99 %) | 1 diff (99.8 %id) | |||
| BU957594 | adenocarcinoma, cell line, breast | .m | 72 to 567 | 1 to 496 | 496/500 (99 %) | 1 diff (99.8 %id) | |||
| AW365113 | denis_drash | .m | 73 to 446 | 372 to 1 | 372/372 (100 %) | 8 diff (97.9 %id) | |||
| AW365115 | denis_drash | .m | 73 to 437 | 369 to 7 | 363/369 (98 %) | 4 diff (99.0 %id) | |||
| BF348984 | denis_drash | .m | 73 to 434 | 370 to 7 | 364/371 (98 %) | 19 diff (94.9 %id) | |||
| CN305888 | embryonic stem cells, DMSO-treated H9 cellline | .m | 73 to 566 | 1 to 494 | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 494/494 (100 %) | 0 diff (100 %id) | |
| CB113476 | Liver | .m | 74 to 184 | 1 to 111 | 111/111 (100 %) | 0 diff (100 %id) | |||
| CN305894 | embryonic stem cells, DMSO-treated H9 cellline | .m | 75 to 565 | 1 to 491 | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 491/491 (100 %) | 0 diff (100 %id) | |
| BG830409 | epithelioid carcinoma cell line, Pancreas | .m | 76 to 565 | 1 to 490 | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 490/490 (100 %) | 2 diff (99.6 %id) | |
| BQ670844 | epidermoid carcinoma, cell line, salivary gland | .m | 76 to 566 | 1 to 491 | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 491/491 (100 %) | 0 diff (100 %id) | |
| BM697883 | eye, fetal eyes | .m | 78 to 465 | 1 to 388 | fully sequenced, | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 388/388 (100 %) | 0 diff (100 %id) | |
| AW365093 | denis_drash | .m | 79 to 437 | 360 to 4 | 357/361 (98 %) | 6 diff (98.4 %id) | |||
| BQ340511 | nervous_normal | .m | 79 to 445 | 1 to 365 | 365/365 (100 %) | 4 diff (99.0 %id) | |||
| BE280480 | choriocarcinoma, placenta | .m | 80 to 566 | 1 to 487 | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 487/487 (100 %) | 0 diff (100 %id) | |
| BM702796 | eye, Retina Foveal and Macular | .m | 80 to 565 | 14 to 500 | 487/500 (97 %) | 6 diff (98.8 %id) | |||
| BG108717 | retina, Retinal Pigment Epithelium sheets | .m | 81 to 415 | 1 to 333 | 333/333 (100 %) | 5 diff (98.5 %id) | |||
| BQ340343 | nervous_normal | .m | 81 to 445 | 1 to 365 | 365/365 (100 %) | 2 diff (99.5 %id) | |||
| AA745280 | Ewing's sarcoma | .m | 81 to 509 | 1 to 426 | 426/426 (100 %) | 8 diff (98.2 %id) | |||
| BM452435 | eye, retinoblastoma | .m | 81 to 566 | 1 to 486 | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 486/486 (100 %) | 0 diff (100 %id) | |
| BQ880298 | epidermoid carcinoma, cell line, salivary gland | .m | 82 to 566 | 1 to 485 | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 485/485 (100 %) | 0 diff (100 %id) | |
| DB572386 | hypothalamus | .m | 83 to 565 | 1 to 483 | Submitted on the opposite strand | 483/483 (100 %) | 1 diff (99.8 %id) | ||
| AA308774 | colon | .m | 84 to 571 | 1 to 489 | 489/489 (100 %) | 3 diff (99.4 %id) | |||
| W76640 | heart | .m | 84 to 324 | 1 to 241 | fully sequenced, | 241/241 (100 %) | 5 diff (98.0 %id) | ||
| W79713 | heart | .m | 84 to 351 | 1 to 267 | fully sequenced, | 267/267 (100 %) | 9 diff (96.7 %id) | ||
| BG112117 | Bone, osteosarcoma, cell line | .m | 84 to 565 | 1 to 483 | 483/504 (95 %) | 5 diff (99.1 %id) | |||
| AF085906 | .m | 85 to 571 | 1 to 487 | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 487/487 (100 %) | 0 diff (100 %id) | ||
| BY800217 | eye | .m | 86 to 565 | 11 to 490 | 480/491 (97 %) | 7 diff (98.6 %id) | |||
| CB158352 | Liver | .m | 86 to 565 | 1 to 480 | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 480/480 (100 %) | 1 diff (99.8 %id) | |
| BE256643 | eye, retinoblastoma | .m | 88 to 566 | 1 to 479 | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 479/479 (100 %) | 0 diff (100 %id) | |
| AA707907 | pineal gland | .m | 89 to 565 | 478 to 1 | 478/478 (100 %) | 7 diff (98.6 %id) | |||
| AI022229 | liver and spleen | .m | 89 to 568 | 482 to 3 | 480/482 (99 %) | 1 diff (99.8 %id) | |||
| AI041107 | .m | 92 to 568 | 481 to 6 | 476/484 (98 %) | 1 diff (99.8 %id) | ||||
| BU507446 | leiomyosarcoma, uterus | .m | 92 to 567 | 1 to 476 | 476/476 (100 %) | 0 diff (100 %id) | |||
| BU853445 | testis | .m | 92 to 568 | 1 to 477 | 477/509 (93 %) | 4 diff (99.3 %id) | |||
| DB544129 | hippocampus | .m | 93 to 566 | 1 to 474 | Submitted on the opposite strand | 474/474 (100 %) | 0 diff (100 %id) | ||
| BE855958 | Prostate | .m | 94 to 568 | 479 to 3 | 477/479 (99 %) | 3 diff (99.4 %id) | |||
| BG338194 | leiomyosarcoma cell line, uterus | .m | 96 to 566 | 1 to 471 | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 471/471 (100 %) | 1 diff (99.8 %id) | |
| AA740169 | 2 pooled tumors (clear cell type), Kidney | .m | 98 to 568 | 476 to 8 | 469/476 (98 %) | 4 diff (99.2 %id) | |||
| AA315816 | colon | .m | 99 to 571 | 1 to 473 | 473/474 (99 %) | 1 diff (99.8 %id) | |||
| N41413 | placenta | .m | 99 to 566 | 1 to 466 | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 466/466 (100 %) | 5 diff (99.0 %id) | |
| AA598700 | lung, lung carcinoma | .m | 99 to 565 | 466 to 2 | 465/466 (99 %) | 4 diff (99.2 %id) | |||
| BE386254 | melanotic melanoma, skin | .m | 99 to 564 | 1 to 466 | 466/466 (100 %) | 2 diff (99.6 %id) | |||
| AV753001 | Pituitary | .m | 99 to 566 | 1 to 468 | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 468/468 (100 %) | 3 diff (99.4 %id) | |
| F25684 | pectoral muscle (after mastectomy) | .m | 100 to 472 | 1 to 373 | 373/373 (100 %) | 0 diff (100 %id) | |||
| AY099360 | whole brain | .m | 103 to 408 | 1 to 306 | 306/306 (100 %) | 1 diff (99.7 %id) | |||
| BF822476 | kidney_tumor | .m | 104 to 508 | 408 to 3 | Submitted on the opposite strand | 406/423 (95 %) | 8 diff (98.2 %id) | ||
| AI266102 | mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus | .m | 106 to 568 | 464 to 1 | 464/467 (99 %) | 9 diff (98.1 %id) | |||
| AA701641 | liver and spleen | .m | 107 to 566 | 458 to 1 | 458/458 (100 %) | 4 diff (99.2 %id) | |||
| BE407935 | choriocarcinoma, placenta | .m | 107 to 565 | 1 to 459 | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 459/459 (100 %) | 0 diff (100 %id) | |
| AA991432 | pooled germ cell tumors | .m | 108 to 518 | 410 to 1 | 410/410 (100 %) | 3 diff (99.3 %id) | |||
| DB564831 | hypothalamus | .m | 109 to 565 | 1 to 457 | Submitted on the opposite strand | 457/457 (100 %) | 0 diff (100 %id) | ||
| BG054985 | brain, glioblastoma (pooled) | .m | 112 to 566 | 455 to 1 | 455/455 (100 %) | 0 diff (100 %id) | |||
| AA704484 | liver and spleen | .m | 114 to 565 | 450 to 1 | 450/450 (100 %) | 6 diff (98.7 %id) | |||
| BF747781 | breast | .m | 115 to 385 | 324 to 57 | Submitted on the opposite strand | 267/324 (82 %) | 8 diff (97.6 %id) | ||
| CN305896 | embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells | .m | 115 to 258 | 1 to 144 | 144/144 (100 %) | 0 diff (100 %id) | |||
| BU927779 | mixed (pool of 40 RNAs) | .m | 117 to 568 | 1 to 452 | 452/458 (98 %) | 2 diff (99.6 %id) | |||
| AA722697 | heart | .m | 120 to 568 | 451 to 5 | 447/451 (99 %) | 4 diff (99.2 %id) | |||
| AA699317 | liver and spleen | .m | 120 to 566 | 445 to 1 | 445/445 (100 %) | 6 diff (98.7 %id) | |||
| AA977173 | pooled germ cell tumors | .m | 120 to 566 | 456 to 11 | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 446/446 (100 %) | 5 diff (98.9 %id) | |
| AI129338 | uterus | .m | 120 to 565 | 458 to 13 | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 446/446 (100 %) | 4 diff (99.2 %id) | |
| AI190633 | heart | .m | 120 to 566 | 457 to 11 | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 447/447 (100 %) | 1 diff (99.8 %id) | |
| AI299232 | 2 pooled tumors (clear cell type), Kidney | .m | 120 to 566 | 457 to 11 | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 447/447 (100 %) | 2 diff (99.6 %id) | |
| AI310807 | 2 pooled tumors (clear cell type), Kidney | .m | 120 to 321 | 202 to 1 | 202/202 (100 %) | 0 diff (100 %id) | |||
| AI363131 | anaplastic oligodendroglioma, brain | .m | 120 to 568 | 455 to 7 | 449/455 (98 %) | 1 diff (99.8 %id) | |||
| AI343871 | 2 pooled tumors (clear cell type), Kidney | .m | 123 to 566 | 457 to 14 | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 444/444 (100 %) | 0 diff (100 %id) | |
| AI355668 | lung | .m | 123 to 568 | 449 to 4 | 446/452 (98 %) | 2 diff (99.6 %id) | |||
| AI494283 | anaplastic oligodendroglioma, brain | .m | 123 to 568 | 453 to 8 | 446/453 (98 %) | 0 diff (100 %id) | |||
| AW005664 | anaplastic oligodendroglioma, brain | .m | 125 to 568 | 452 to 9 | 444/452 (98 %) | 0 diff (100 %id) | |||
| AW117478 | pooled | .m | 125 to 566 | 454 to 13 | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 442/442 (100 %) | 0 diff (100 %id) | |
| AI709080 | aorta | .m | 131 to 568 | 439 to 2 | 438/439 (99 %) | 0 diff (100 %id) | |||
| AW239094 | lung, cell line | .m | 132 to 601 | 1 to 470 | 470/470 (100 %) | 0 diff (100 %id) | |||
| D54718 | .m | 137 to 565 | 425 to 1 | 425/425 (100 %) | 8 diff (98.2 %id) | ||||
| BG214137 | .m | 141 to 565 | 1 to 426 | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 426/426 (100 %) | 3 diff (99.3 %id) | ||
| AA770648 | carcinoid, lung | .m | 142 to 566 | 437 to 15 | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 423/448 (94 %) | 4 diff (99.2 %id) | |
| AA947950 | carcinoid, lung | .m | 142 to 563 | 420 to 1 | 420/423 (99 %) | 4 diff (99.1 %id) | |||
| AA533144 | normal prostatic epithelial cells, Prostate | .m | 144 to 563 | 419 to 1 | 419/460 (91 %) | 5 diff (99.0 %id) | |||
| BM548550 | brain, hippocampus | .m | 145 to 1103 | 10 to 979 | tiling clone, | 970/1120 (86 %) | 41 diff (96.4 %id) | ||
| AI299979 | carcinoid, lung | .m | 150 to 566 | 432 to 16 | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 417/417 (100 %) | 1 diff (99.8 %id) | |
| CF128690 | Chondrosarcoma Lung Metastasis cell lines, lung | .m | 150 to 565 | 1 to 415 | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 415/415 (100 %) | 1 diff (99.8 %id) | |
| BF791890 | adrenal cortex carcinoma, cell line, adrenal gland | .m | 153 to 565 | 1 to 409 | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 409/409 (100 %) | 5 diff (98.8 %id) | |
| AA884817 | pooled | .m | 159 to 566 | 407 to 1 | 407/410 (99 %) | 1 diff (99.8 %id) | |||
| AA808457 | germinal center B cell | .m | 165 to 566 | 420 to 20 | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 401/401 (100 %) | 3 diff (99.3 %id) | |
| AI084918 | anaplastic oligodendroglioma, brain | .m | 165 to 568 | 404 to 1 | 404/404 (100 %) | 1 diff (99.8 %id) | |||
| BU162440 | melanotic melanoma, cell line, skin | .m | 169 to 566 | 1 to 398 | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 398/398 (100 %) | 1 diff (99.8 %id) | |
| AA114924 | uterus | .m | 171 to 748 | 35 to 623 | 589/623 (94 %) | 22 diff (96.5 %id) | |||
| AI128584 | heart | .m | 174 to 565 | 391 to 1 | 391/391 (100 %) | 3 diff (99.3 %id) | |||
| BG491397 | amelanotic melanoma, cell line, skin | .m | 186 to 565 | 1 to 378 | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 378/378 (100 %) | 2 diff (99.5 %id) | |
| BM911843 | amelanotic melanoma, cell line, skin | .m | 188 to 566 | 1 to 379 | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 379/379 (100 %) | 0 diff (100 %id) | |
| BM743496 | Ascites, stomach | .m | 190 to 566 | 1 to 376 | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 376/376 (100 %) | 2 diff (99.5 %id) | |
| D52875 | .m | 192 to 565 | 372 to 1 | fully sequenced, | 372/372 (100 %) | 5 diff (98.7 %id) | |||
| BM670693 | eye, fetal eyes | .m | 192 to 566 | 393 to 19 | fully sequenced, AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 375/375 (100 %) | 0 diff (100 %id) | |
| BE382489 | brain, neuroblastoma | .m | 196 to 565 | 1 to 370 | 370/372 (99 %) | 2 diff (99.5 %id) | |||
| CF129209 | Chondrosarcoma Lung Metastasis cell lines, lung | .m | 201 to 566 | 1 to 366 | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 366/366 (100 %) | 4 diff (99.0 %id) | |
| BY998907 | .m | 216 to 568 | 1 to 353 | Submitted on the opposite strand | 353/354 (99 %) | 1 diff (99.8 %id) | |||
| BY998979 | .m | 216 to 568 | 1 to 353 | Submitted on the opposite strand | 353/354 (99 %) | 1 diff (99.8 %id) | |||
| BG219881 | .m | 224 to 553 | 379 to 51 | AAA | Submitted on the opposite strand | 329/347 (94 %) | 5 diff (98.6 %id) | ||
| AA724428 | pooled | .m | 224 to 568 | 345 to 2 | 344/345 (99 %) | 1 diff (99.8 %id) | |||
| F37949 | pectoral muscle (after mastectomy) | .m | 234 to 565 | 1 to 332 | 332/332 (100 %) | 5 diff (98.5 %id) | |||
| AA491586 | Ewing's sarcoma | .m | 241 to 566 | 344 to 20 | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 325/325 (100 %) | 1 diff (99.7 %id) | |
| AA658037 | .m | 261 to 351 | 91 to 1 | 91/91 (100 %) | 0 diff (100 %id) | ||||
| W73052 | heart | .m | 263 to 567 | 305 to 1 | fully sequenced, | 305/305 (100 %) | 0 diff (100 %id) | ||
| CN305891 | embryonic stem cells, DMSO-treated H9 cellline | .m | 278 to 577 | 1 to 300 | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 300/300 (100 %) | 0 diff (100 %id) | |
| AA524092 | colon | .m | 291 to 565 | 275 to 1 | 275/275 (100 %) | 0 diff (100 %id) | |||
| BG212546 | .m | 292 to 577 | 1 to 284 | 284/284 (100 %) | 5 diff (98.3 %id) | ||||
| GD158296 | .m | 294 to 566 | 1 to 273 | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 273/273 (100 %) | 2 diff (99.3 %id) | ||
| BG217323 | .m | 296 to 571 | 1 to 275 | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 275/275 (100 %) | 3 diff (99.0 %id) | ||
| CN305895 | embryonic stem cells, DMSO-treated H9 cellline | .m | 297 to 568 | 1 to 272 | 272/277 (98 %) | 2 diff (99.3 %id) | |||
| AA852096 | Bone, Hip | .m | 299 to 554 | 266 to 8 | 259/300 (86 %) | 3 diff (99.0 %id) | |||
| FN054821 | breast carcinoma | .m | 313 to 414 | 102 to 1 | Submitted on the opposite strand | 102/102 (100 %) | 0 diff (100 %id) | ||
| AA632937 | breast | .m | 318 to 559 | 247 to 6 | 242/247 (97 %) | 0 diff (100 %id) | |||
| W81385 | heart | .m | 321 to 565 | 246 to 1 | fully sequenced, | 246/246 (100 %) | 0 diff (100 %id) | ||
| AA513190 | Ewing's sarcoma | .m | 323 to 565 | 1 to 242 | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 242/242 (100 %) | 5 diff (98.0 %id) | |
| DN602016 | human embryonic stem cells | .m | 336 to 919 | 1 to 584 | tiling clone, | 584/584 (100 %) | 0 diff (100 %id) | ||
| AA700360 | liver and spleen | .m | 348 to 566 | 219 to 1 | 219/219 (100 %) | 1 diff (99.6 %id) | |||
| BM667060 | eye, fetal eyes | .m | 435 to 566 | 150 to 19 | fully sequenced, AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 132/132 (100 %) | 0 diff (100 %id) | |
| CD675493 | eye, lens | .m | 460 to 566 | 1 to 107 | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 107/107 (100 %) | 0 diff (100 %id) | |
| AA678104 | liver and spleen | .m | 992 to 1433 | 441 to 1 | tiling clone, | 441/441 (100 %) | 2 diff (99.6 %id) | ||
| BF739981 | Kidney | .m | 1094 to 1427 | 335 to 2 | 334/335 (99 %) | 0 diff (100 %id) | |||
| BU584599 | stomach | .m | 1190 to 1631 | 445 to 1 | tiling clone, | 445/445 (100 %) | 5 diff (98.9 %id) | ||
| AA378419 | synovial membrane | .n-u | 1 to 341 | 1 to 343 | exact | tiling clone, | 343/343 (100 %) | 4 diff (98.9 %id) | |
| DA353856 | substantia nigra | .o | 1 to 573 | 2 to 574 | exact | tiling clone, capped | 573/573 (100 %) | 1 diff (99.9 %id) | |
| BF961154 | nervous_normal | .o | 7 to 262 | 268 to 14 | 255/277 (92 %) | 9 diff (96.8 %id) | |||
| BF962530 | nervous_normal | .o | 7 to 262 | 289 to 34 | 256/298 (85 %) | 8 diff (97.4 %id) | |||
| DA186212 | amygdala | .o | 35 to 556 | 2 to 523 | exact | tiling clone, capped | 522/522 (100 %) | 0 diff (100 %id) | |
| BP273012 | .p | 1 to 443 | 1 to 443 | A3L D6Y | tiling clone, AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 443/443 (100 %) | 4 diff (99.1 %id) | |
| AA721776 | Ewing's sarcoma | .q | 1 to 338 | 1 to 337 | H2D W17C P79Q | tiling clone, | 337/344 (97 %) | 11 diff (96.9 %id) | |
| AI140018 | heart | .r | 1 to 375 | 376 to 2 | exact | tiling clone, | 375/376 (99 %) | 0 diff (100 %id) | |
| DW418401 | Liver | .s | 1 to 375 | 10 to 384 | T9A | tiling clone, | 375/428 (87 %) | 12 diff (97.2 %id) | |
| DA293422 | hippocampus | .t | 1 to 458 | 2 to 461 | tiling clone, capped | 460/460 (100 %) | 3 diff (99.4 %id) | ||
| DA840551 | placenta | .t | 1 to 441 | 2 to 442 | tiling clone, capped | 441/441 (100 %) | 1 diff (99.8 %id) | ||
| BG326674 | Kidney, renal cell adenocarcinoma | .t | 39 to 1267 | 32 to 637 | AAA | 530/646 (82 %) | 39 diff (94.0 %id) | ||
| BU661207 | blood | .t | 404 to 1083 | 1 to 679 | tiling clone, | 679/679 (100 %) | 5 diff (99.3 %id) | ||
| FN071607 | breast carcinoma | .t | 432 to 494 | 62 to 1 | Submitted on the opposite strand | 62/64 (96 %) | 1 diff (98.5 %id) | ||
| DB504402 | hypothalamus | .u | 1 to 484 | 1 to 484 | exact | tiling clone, | 484/484 (100 %) | 1 diff (99.8 %id) | |
| DB575644 | hypothalamus | .u | 2 to 489 | 7 to 495 | exact | tiling clone, | Submitted on the opposite strand | 489/497 (98 %) | 7 diff (98.6 %id) |
| BF747003 | breast | .u | 28 to 449 | 434 to 13 | Q55P | Submitted on the opposite strand | 422/434 (97 %) | 2 diff (99.6 %id) | |
| CF124893 | CNCAP(3)T-225 cell line, Prostate | .va | 1 to 309 | 287 to 595 | exact | 309/595 (51 %) | 6 diff (99.0 %id) | ||
| TI_154185291 | .va | 1 to 369 | 349 to 716 | exact | tiling clone, AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 368/647 (56 %) | 9 diff (98.7 %id) | |
| BE866592 | bladder, carcinoma, cell line | .vb-u | 1 to 564 | 1 to 568 | C30R G41A F42L R43D C44A ... | tiling clone, | 568/812 (69 %) | 18 diff (97.8 %id) | |
| DA835273 | placenta | .vb-u | 72 to 622 | 2 to 552 | exact | tiling clone, capped | 551/551 (100 %) | 0 diff (100 %id) | |
| AK057119 | Spleen | .vb-u | 315 to 2267 | 1 to 1953 | tiling clone, available from FLJ, | 1953/1953 (100 %) | 1 diff (100.0 %id) | ||
| DA931232 | Spleen | .vb-u | 316 to 1184 | 2 to 866 | capped | 865/867 (99 %) | 15 diff (98.3 %id) | ||
| BX093383 | melanocyte | .vb-u | 812 to 1553 | 1 to 743 | 743/743 (100 %) | 1 diff (99.9 %id) | |||
| CN430726 | embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells | .vb-u | 1080 to 1706 | 1 to 628 | tiling clone, | 628/628 (100 %) | 3 diff (99.6 %id) | ||
| BC062446 | Skin and meninges pool- skin, dura matter,pia matter, choroid plexus. | .vb-u | 1185 to 1828 | 1 to 644 | available from MGC, AAA | 644/644 (100 %) | 3 diff (99.6 %id) | ||
| CB998995 | Pooled-Skin | .vb-u | 1186 to 1824 | 1 to 643 | available from MGC, AAA | 643/879 (73 %) | 7 diff (99.3 %id) | ||
| EL952917 | eyeball | .vb-u | 1200 to 1659 | 51 to 510 | 460/510 (90 %) | 8 diff (98.5 %id) | |||
| BG946615 | bladder_tumor | .vb-u | 1342 to 1705 | 25 to 386 | 362/389 (93 %) | 11 diff (97.2 %id) | |||
| BM687849 | eye, Retina Foveal and Macular | .vb-u | 1360 to 1722 | 6 to 368 | 363/368 (98 %) | 6 diff (98.4 %id) | |||
| AI042495 | mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus | .vb-u | 1381 to 1839 | 459 to 1 | 459/459 (100 %) | 2 diff (99.6 %id) | |||
| AI123248 | mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus | .vb-u | 1381 to 1837 | 458 to 1 | 458/458 (100 %) | 2 diff (99.6 %id) | |||
| N21682 | melanocyte | .vb-u | 1384 to 1839 | 463 to 1 | 463/463 (100 %) | 10 diff (97.9 %id) | |||
| AI042496 | mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus | .vb-u | 1415 to 1839 | 425 to 1 | 425/425 (100 %) | 3 diff (99.3 %id) | |||
| AI377541 | mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus | .vb-u | 1443 to 1837 | 395 to 1 | 395/395 (100 %) | 0 diff (100 %id) | |||
| DB332431 | Spleen | .vb-u | 1822 to 2267 | 450 to 1 | 450/450 (100 %) | 11 diff (97.6 %id) | |||
| BI667312 | brain, hypothalamus | .vb-u | 1834 to 2267 | 1 to 434 | available from MGC, AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 434/434 (100 %) | 5 diff (98.9 %id) | |
| DB560843 | hypothalamus | .vb-u | 1839 to 2267 | 15 to 445 | Submitted on the opposite strand | 431/445 (96 %) | 6 diff (98.7 %id) | ||
| TI_44343662 | .vb-u | 1839 to 2267 | 88 to 516 | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 429/516 (83 %) | 6 diff (98.9 %id) | ||
| BC039451 | Brain, hypothalamus | .vb-u | 1848 to 2267 | 10 to 429 | available from MGC, AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 420/420 (100 %) | 0 diff (100 %id) | |
| AK090764 | alzheimer cortex | .vc | 1 to 1870 | 2 to 1871 | exact | tiling clone, available from FLJ, | 1871/1871 (100 %) | 3 diff (99.9 %id) | |
| DA129393 | alzheimer cortex | .vc | 1 to 420 | 2 to 421 | capped | 420/420 (100 %) | 0 diff (100 %id) | ||
| BG913893 | anaplastic oligodendroglioma with 1p/19qloss, brain | .vc | 84 to 814 | 12 to 753 | 742/818 (90 %) | 6 diff (99.3 %id) | |||
| BG960563 | colon | .vc | 166 to 529 | 364 to 2 | 363/364 (99 %) | 0 diff (100 %id) | |||
| AL601629 | .vc | 207 to 622 | 1 to 416 | 416/416 (100 %) | 1 diff (99.8 %id) | ||||
| BF356652 | head_neck | .vc | 235 to 541 | 1 to 306 | 306/313 (97 %) | 5 diff (98.5 %id) | |||
| BF356650 | head_neck | .vc | 237 to 541 | 1 to 305 | 305/310 (98 %) | 3 diff (99.1 %id) | |||
| AL599586 | .vc | 244 to 533 | 1 to 290 | 290/290 (100 %) | 5 diff (98.3 %id) | ||||
| BF352442 | head_neck | .vc | 263 to 648 | 401 to 16 | 386/401 (96 %) | 0 diff (100 %id) | |||
| DA080878 | cerebellum | .vc | 317 to 886 | 2 to 571 | capped | 570/570 (100 %) | 0 diff (100 %id) | ||
| FN141504 | breast carcinoma | .vc | 332 to 385 | 1 to 55 | 55/56 (98 %) | 2 diff (96.5 %id) | |||
| BE168679 | head_neck | .vc | 366 to 526 | 6 to 164 | 159/164 (96 %) | 7 diff (95.8 %id) | |||
| BX954261 | .vc | 373 to 977 | 1 to 605 | 605/605 (100 %) | 1 diff (99.9 %id) | ||||
| CD519114 | White Matter | .vc | 421 to 1189 | 1 to 779 | 779/885 (88 %) | 12 diff (98.7 %id) | |||
| CR747885 | Kidney | .vc | 698 to 1317 | 1 to 621 | tiling clone, | 621/621 (100 %) | 1 diff (99.9 %id) | ||
| BF368286 | placenta_normal | .vc | 730 to 909 | 1 to 179 | 179/179 (100 %) | 10 diff (94.5 %id) | |||
| BG001820 | placenta_normal | .vc | 734 to 909 | 20 to 194 | 175/194 (90 %) | 6 diff (97.0 %id) | |||
| BQ321413 | colon | .vc | 735 to 830 | 10 to 104 | 95/104 (91 %) | 6 diff (94.3 %id) | |||
| BQ376278 | testis_normal | .vc | 740 to 914 | 17 to 190 | 174/204 (85 %) | 14 diff (93.2 %id) | |||
| BF368284 | placenta_normal | .vc | 744 to 924 | 192 to 13 | 180/192 (93 %) | 0 diff (100 %id) | |||
| BF376646 | testis_normal | .vc | 744 to 886 | 149 to 7 | 143/149 (95 %) | 0 diff (100 %id) | |||
| BG001812 | placenta_normal | .vc | 744 to 907 | 165 to 3 | 163/165 (98 %) | 0 diff (100 %id) | |||
| BG001819 | placenta_normal | .vc | 744 to 909 | 167 to 1 | 167/167 (100 %) | 3 diff (98.3 %id) | |||
| EH326758 | .vc | 768 to 837 | 1 to 69 | 69/69 (100 %) | 1 diff (98.6 %id) | ||||
| TI_57167357 | .vc | 820 to 1517 | 32 to 730 | 699/730 (95 %) | 6 diff (99.2 %id) | ||||
| BI835262 | pooled pancreas and spleen | .vc | 821 to 1517 | 1 to 698 | 698/698 (100 %) | 3 diff (99.6 %id) | |||
| BF354042 | head_neck | .vc | 938 to 1148 | 1 to 211 | 211/220 (95 %) | 6 diff (97.3 %id) | |||
| AW179324 | stomach | .vc | 1251 to 1749 | 504 to 2 | F2V S3F S5Q M6L L7C ... | 503/504 (99 %) | 13 diff (97.5 %id) | ||
| BQ640607 | eye, retina | .vc | 1276 to 1841 | 1 to 569 | exact | 569/569 (100 %) | 4 diff (99.3 %id) | ||
| AA663765 | schizophrenic brain S-11 frontal lobe | .vc | 1306 to 1686 | 1 to 381 | Submitted on the opposite strand | 381/388 (98 %) | 4 diff (99.0 %id) | ||
| AA932194 | Kidney | .vc | 1409 to 1872 | 467 to 5 | exact | tiling clone, | 463/467 (99 %) | 1 diff (99.8 %id) | |
| DB301007 | alzheimer cortex | .vc | 1419 to 1870 | 452 to 1 | C22X | 452/452 (100 %) | 1 diff (99.8 %id) | ||
| AI002307 | carcinoid, lung | .vc | 1446 to 1870 | 448 to 25 | V23S H24I W25G T26Q T27Q ... | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 424/424 (100 %) | 3 diff (99.3 %id) |
| TI_1242414576 | .vd-u | 1 to 1073 | 59 to 1126 | exact | tiling clone, | 1068/1198 (89 %) | 6 diff (99.5 %id) | ||
| TI_1242418488 | .vd-u | 1 to 964 | 62 to 1024 | exact | 963/1024 (94 %) | 6 diff (99.5 %id) | |||
| BM697797 | eye, fetal eyes | .vd-u | 343 to 840 | 1 to 498 | exact | 498/498 (100 %) | 0 diff (100 %id) | ||
| BU736087 | eye, fetal eyes | .vd-u | 1222 to 1767 | 564 to 19 | tiling clone, AAA | 546/546 (100 %) | 0 diff (100 %id) | ||
| AA703189 | liver and spleen | .vd-u | 1271 to 1756 | 488 to 3 | 486/488 (99 %) | 0 diff (100 %id) | |||
| BX108020 | placenta | .vd-u | 1272 to 1756 | 1 to 485 | AAA | 485/485 (100 %) | 0 diff (100 %id) | ||
| R22532 | placenta | .vd-u | 1272 to 1511 | 1 to 239 | fully sequenced, | 239/239 (100 %) | 1 diff (99.6 %id) | ||
| AI808289 | pooled | .vd-u | 1284 to 1735 | 493 to 43 | AAA | 451/479 (94 %) | 0 diff (100 %id) | ||
| AI911219 | pooled | .vd-u | 1305 to 1756 | 453 to 2 | 452/453 (99 %) | 0 diff (100 %id) | |||
| AI635379 | pooled germ cell tumors | .vd-u | 1313 to 1768 | 456 to 1 | 456/703 (64 %) | 0 diff (100 %id) | |||
| AW043558 | pooled | .vd-u | 1315 to 1756 | 443 to 2 | 442/443 (99 %) | 0 diff (100 %id) | |||
| AW389519 | stomach | .vd-u | 1326 to 1723 | 417 to 20 | 398/417 (95 %) | 0 diff (100 %id) | |||
| AA603979 | Prostate, prostate tumor | .vd-u | 1340 to 1756 | 419 to 3 | 417/419 (99 %) | 0 diff (100 %id) | |||
| AA865115 | germinal center B cell | .vd-u | 1412 to 1763 | 374 to 23 | AAA | 352/352 (100 %) | 0 diff (100 %id) | ||
| R09760 | liver and spleen | .vd-u | 1413 to 1756 | 354 to 5 | 350/432 (81 %) | 0 diff (100 %id) | |||
| AW173088 | pooled | .vd-u | 1424 to 1763 | 354 to 15 | AAA | 340/340 (100 %) | 2 diff (99.5 %id) | ||
| AI620801 | Prostate | .vd-u | 1426 to 1768 | 346 to 4 | 343/346 (99 %) | 0 diff (100 %id) | |||
| R22533 | placenta | .vd-u | 1481 to 1757 | 281 to 1 | fully sequenced, | 281/281 (100 %) | 7 diff (97.6 %id) | ||
| BM980889 | lung, Primary Lung Cystic Fibrosis EpithelialCells | .vd-u | 1608 to 1776 | 187 to 19 | tiling clone, AAA | 169/169 (100 %) | 0 diff (100 %id) | ||
| DB458220. matches multiple genes | testis | .ve | 1 to 479 | 3 to 481 | exact | tiling clone, | also hits gene karee | 481/481 (100 %) | 2 diff (99.6 %id) |
| BG719958 | testis | .ve | 8 to 784 | 1 to 779 | 779/779 (100 %) | 7 diff (99.2 %id) | |||
| BC005331 | Brain, primitive neuroectodermal | .ve | 14 to 1432 | 1 to 1419 | tiling clone, available from MGC, AAA | 1419/1419 (100 %) | 3 diff (99.8 %id) | ||
| BE958533 | brain, primitive neuroectoderm | .ve | 33 to 719 | 1 to 693 | available from MGC, | 693/711 (97 %) | 26 diff (96.4 %id) | ||
| BF978458 | melanotic melanoma, high MDR, skin | .ve | 33 to 755 | 1 to 717 | 717/890 (80 %) | 14 diff (98.5 %id) | |||
| BG494911 | lung, mucoepidermoid carcinoma | .ve | 33 to 704 | 1 to 673 | 673/673 (100 %) | 3 diff (99.6 %id) | |||
| BF029378 | bladder, carcinoma, cell line | .ve | 42 to 588 | 1 to 566 | 562/618 (90 %) | 36 diff (94.2 %id) | |||
| BG686505 | B-cells, primary B-cells from tonsils (cell line) | .ve | 63 to 702 | 1 to 640 | available from MGC, | 640/642 (99 %) | 2 diff (99.7 %id) | ||
| BC023654 | Primary B-Cells from Tonsils | .ve | 64 to 1428 | 1 to 1365 | available from MGC, AAA | 1365/1365 (100 %) | 1 diff (100.0 %id) | ||
| BU193581 | melanotic melanoma, skin | .ve | 72 to 929 | 8 to 872 | available from MGC, | 865/888 (97 %) | 21 diff (97.7 %id) | ||
| R09949 | liver and spleen | .ve | 75 to 430 | 1 to 372 | 372/372 (100 %) | 25 diff (93.3 %id) | |||
| BF795813 | lymph, lymphoma, cell line | .ve | 75 to 780 | 12 to 713 | 702/935 (75 %) | 21 diff (97.8 %id) | |||
| BC053556 | Skin, melanotic melanoma. | .ve | 76 to 1421 | 1 to 1346 | available from MGC, AAA | 1346/1346 (100 %) | 0 diff (100 %id) | ||
| BU165976 | melanotic melanoma, skin | .ve | 78 to 819 | 12 to 760 | 749/921 (81 %) | 16 diff (98.3 %id) | |||
| BC011632 | Skin, melanotic melanoma. | .ve | 84 to 1421 | 1 to 1338 | available from MGC, AAA | 1338/1338 (100 %) | 0 diff (100 %id) | ||
| CX752385 | Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass | .ve | 93 to 782 | 1 to 690 | Submitted on the opposite strand | 690/690 (100 %) | 0 diff (100 %id) | ||
| CN257896 | embryonic stem cells, DMSO-treated H9 cellline | .ve | 100 to 848 | 1 to 750 | 750/750 (100 %) | 4 diff (99.5 %id) | |||
| BF125817 | melanotic melanoma, skin | .ve | 104 to 786 | 1 to 682 | available from MGC, | 682/917 (74 %) | 15 diff (98.4 %id) | ||
| BQ434316 | melanotic melanoma, skin | .ve | 117 to 998 | 5 to 888 | 884/888 (99 %) | 15 diff (98.4 %id) | |||
| CN257900 | embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells | .ve | 119 to 719 | 1 to 601 | 601/601 (100 %) | 0 diff (100 %id) | |||
| BF724265 | eye, Iris | .ve | 309 to 697 | 1 to 389 | 389/389 (100 %) | 4 diff (99.0 %id) | |||
| CN257898 | embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells | .ve | 337 to 944 | 1 to 610 | 610/610 (100 %) | 5 diff (99.2 %id) | |||
| R12589 | liver and spleen | .ve | 677 to 984 | 318 to 5 | 314/372 (84 %) | 0 diff (100 %id) | |||
| BU628809 | Bone, Enchondroma cell line | .ve | 687 to 1432 | 763 to 19 | AAA | 745/745 (100 %) | 4 diff (99.5 %id) | ||
| CA425939 | cell lines, Chondrosarcoma | .ve | 735 to 1421 | 705 to 19 | AAA | 687/687 (100 %) | 1 diff (99.9 %id) | ||
| BU628165 | Bone, Enchondroma cell line | .ve | 774 to 1432 | 677 to 19 | AAA | 659/659 (100 %) | 3 diff (99.6 %id) | ||
| FN106893 | breast carcinoma | .ve | 790 to 874 | 1 to 85 | 85/85 (100 %) | 0 diff (100 %id) | |||
| TI_59393552 | .ve | 814 to 1431 | 46 to 662 | AAA | 617/617 (100 %) | 7 diff (98.9 %id) | |||
| BM015322 | breast, mammary adenocarcinoma, cell line | .ve | 815 to 1431 | 1 to 616 | AAA | 616/616 (100 %) | 7 diff (98.9 %id) | ||
| DA355646 | subthalamic nucleus | .vf | 1 to 558 | 2 to 560 | S24F W25L T26D I27D | tiling clone, capped | 559/559 (100 %) | 1 diff (99.9 %id) | |
| CD236983 | Pituitary | .vf | 2 to 692 | 1 to 691 | exact | 691/691 (100 %) | 1 diff (99.9 %id) | ||
| AX721172 | .vf | 15 to 1302 | 1 to 1286 | exact | tiling clone, | 1286/1286 (100 %) | 3 diff (99.8 %id) | ||
| BC045166 | Breast, mammary adenocarcinoma. | .vf | 50 to 354 | 1 to 305 | exact | available from MGC, AAA | 305/305 (100 %) | 0 diff (100 %id) | |
| TI_59394567 | .vf | 50 to 354 | 90 to 394 | exact | AAA | 305/305 (100 %) | 0 diff (100 %id) | ||
| BM016174 | breast, mammary adenocarcinoma, cell line | .vf | 51 to 354 | 1 to 304 | exact | available from MGC, AAA | 304/304 (100 %) | 0 diff (100 %id) | |
| BU159127 | eye, retinoblastoma | .vf | 57 to 606 | 1 to 559 | exact | 559/784 (71 %) | 25 diff (96.9 %id) | ||
| DB310473 | subthalamic nucleus | .vf | 788 to 1301 | 514 to 1 | tiling clone, | 514/514 (100 %) | 2 diff (99.7 %id) | ||
| BU169268 | epidermoid carcinoma, cell line, salivary gland | .vg | 1 to 771 | 1 to 771 | exact | tiling clone, AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 771/771 (100 %) | 0 diff (100 %id) |
| BU169264 | epidermoid carcinoma, cell line, salivary gland | .vg | 3 to 771 | 34 to 803 | exact | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 770/804 (95 %) | 10 diff (98.8 %id) |
| CN364892 | embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells | .vh | 1 to 702 | 1 to 702 | exact | tiling clone, | 702/702 (100 %) | 1 diff (99.9 %id) | |
| DA295533 | hippocampus | .vi-u | 1 to 564 | 2 to 564 | exact | tiling clone, capped | 563/563 (100 %) | 2 diff (99.7 %id) | |
| DA776145 | brain | .vi-u | 136 to 699 | 2 to 565 | exact | tiling clone, capped | 564/564 (100 %) | 0 diff (100 %id) | |
| CK004424 | brain/CNS, Human Brain - Frontal Cortex | .vj | 1 to 601 | 1 to 600 | exact | tiling clone, | 600/601 (99 %) | 5 diff (99.2 %id) | |
| DA094429 | cerebellum | .vj | 10 to 564 | 2 to 557 | C42X A43C I44H C45L R46Q ... | capped | 556/556 (100 %) | 2 diff (99.7 %id) | |
| DA370082 | subthalamic nucleus | .vj | 10 to 565 | 2 to 557 | exact | capped | 556/556 (100 %) | 2 diff (99.7 %id) | |
| BI223624 | cervical carcinoma cell line, cervix | .vj | 11 to 678 | 1 to 670 | S11E G12R T13H N14Q S15Q ... | 670/730 (91 %) | 12 diff (98.4 %id) | ||
| AI814515 | lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) | .vj | 98 to 682 | 597 to 13 | AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 585/589 (99 %) | 2 diff (99.7 %id) | |
| AA812938 | .vj | 229 to 684 | 462 to 8 | 455/462 (98 %) | 2 diff (99.6 %id) | ||||
| AA852095 | Bone, Hip | .vj | 236 to 531 | 9 to 303 | 295/303 (97 %) | 3 diff (99.1 %id) | |||
| BF512968 | .vj | 249 to 687 | 456 to 18 | tiling clone, AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 439/439 (100 %) | 0 diff (100 %id) | ||
| BF918069 | uterus_tumor | .vk-u | 1 to 197 | 1 to 197 | tiling clone, | 197/197 (100 %) | 4 diff (98.0 %id) | ||
| AI860168 | lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) | .vk-u | 146 to 607 | 463 to 1 | tiling clone, | 463/463 (100 %) | 10 diff (97.9 %id) | ||
| DA352140 | substantia nigra | .vl | 1 to 542 | 2 to 543 | exact | tiling clone, capped | 542/542 (100 %) | 0 diff (100 %id) | |
| TI_57164904 | .vm | 1 to 446 | 34 to 480 | H19Q | tiling clone, AAA | Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) | 447/480 (93 %) | 9 diff (98.2 %id) | |
| AW161517 | brain, frontal lobe | .vm | 7 to 446 | 1 to 440 | exact | tiling clone, | 440/442 (99 %) | 1 diff (99.8 %id) | |
| AW161957 | brain, frontal lobe | .vm | 7 to 425 | 1 to 419 | exact | 419/419 (100 %) | 0 diff (100 %id) | ||
| AW163628 | brain, frontal lobe | .vm | 7 to 442 | 1 to 436 | exact | 436/436 (100 %) | 0 diff (100 %id) | ||
| AA843156 | parathyroid gland, parathyroid tumor | .vm | 56 to 449 | 398 to 6 | exact | 393/398 (98 %) | 1 diff (99.8 %id) | ||
| AA570209 | .vn-u | 1 to 387 | 1 to 385 | I2T S7G | tiling clone, | 385/387 (99 %) | 6 diff (98.5 %id) | ||
| AW177678 | colon | Gene XPNPEP3andRBX1, variant not shown | This clone was ignored | ||||||
| BX648018 | human retina | Gene XPNPEP3andRBX1, variant not shown | available from DKFZ, AAA | This clone was ignored | |||||
| BC032537. matches multiple genes | Skin, melanotic melanoma. | Gene lorga, variant not shown | available from MGC, AAA | This clone was ignored, also hits gene lorga | |||||
| BC032537. matches multiple genes | Skin, melanotic melanoma. | Gene XPNPEP3andRBX1, variant not shown | available from MGC, AAA | This clone was ignored, also hits gene lorga |
| ? | Gene Summary | Gene on genome | mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i-u, .j, .k, .l, .m, .n-u, .o, .p, .q, .r, .s, .t, .u, .va, .vb-u, .vc, .vd-u, .ve, .vf, .vg, .vh, .vi-u, .vj, .vk-u, .vl, .vm, .vn-u | Alternative mRNAs features, proteins, introns, exons, sequences | Expression Tissue | Function, regulation, related genes DCI |