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Gene ASPHD2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
85 supporting clones for gene ASPHD2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
CR603469 B cells (Ramos cell line) Cot 25-normalized .a 1 to 1933 1 to 1933 exact tiling clone,   1933/1933
(100 %)
0 diff
(100 %id)
BX342782   .a 1 to 920 1 to 912       912/992
(91 %)
14 diff
(98.6 %id)
BX387619 Placenta Cot 25-normalized .a 20 to 789 1 to 771       771/771
(100 %)
4 diff
(99.5 %id)
BQ067896 brain .a 33 to 540 13 to 521       509/1408
(36 %)
44 diff
(96.9 %id)
NM_020437.4   .a 42 to 3354 1 to 3313 exact RefSeq,   3313/3313
(100 %)
0 diff
(100 %id)
DR006937 Spleen .a 42 to 774 1 to 734       734/734
(100 %)
3 diff
(99.6 %id)
TI_57148957   .a 55 to 928 21 to 900       880/900
(97 %)
21 diff
(97.7 %id)
CV572589 cornea, eye .a 58 to 671 1 to 614       614/614
(100 %)
1 diff
(99.9 %id)
BM544434 brain, hippocampus .a 59 to 1039 20 to 1004       985/1026
(96 %)
42 diff
(96.0 %id)
CN285423 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 62 to 312 1 to 251       251/251
(100 %)
8 diff
(96.9 %id)
BC036753 Colon, Kidney, Stomach, adult, whole pooled .a 64 to 1947 1 to 1884 exact available from MGC, AAA   1884/1884
(100 %)
1 diff
(100.0 %id)
BI764339 pooled colon, kidney, stomach .a 64 to 928 1 to 871       871/871
(100 %)
15 diff
(98.3 %id)
AK315112 cerebellum .a 191 to 1548 1 to 1358 exact     1358/1358
(100 %)
0 diff
(100 %id)
DA125809 cerebellum .a 192 to 774 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
H09834 whole brain .a 220 to 592 1 to 378       378/380
(99 %)
9 diff
(97.7 %id)
AW955243   .a 235 to 905 1 to 675       675/676
(99 %)
15 diff
(97.8 %id)
AA306200   .a 244 to 752 10 to 520       511/524
(97 %)
3 diff
(99.5 %id)
CN358355 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 319 to 978 1 to 663       663/663
(100 %)
5 diff
(99.3 %id)
CR456391   .a 369 to 1570 1 to 1202 exact     1202/1202
(100 %)
0 diff
(100 %id)
CU013254 Synthetic constructs .a 438 to 1545 19 to 1126       1108/1141
(97 %)
7 diff
(99.4 %id)
CU012966 Synthetic constructs .a 438 to 1557 19 to 1138 exact     1120/1144
(97 %)
11 diff
(99.1 %id)
BQ720350 sympathetic trunk .a 442 to 1192 1 to 757       757/950
(79 %)
10 diff
(99.0 %id)
TI_1948122270   .a 512 to 989 128 to 609   fully sequenced,   482/609
(79 %)
6 diff
(99.1 %id)
TI_1948122450   .a 512 to 907 131 to 530   fully sequenced,   400/530
(75 %)
5 diff
(99.1 %id)
TI_1948122619   .a 512 to 970 126 to 585   fully sequenced,   460/585
(78 %)
5 diff
(99.2 %id)
CV030640 mixed .a 517 to 1184 1 to 664       664/683
(97 %)
5 diff
(99.3 %id)
BG700827 brain, hippocampus .a 529 to 1329 1 to 796       796/803
(99 %)
12 diff
(98.6 %id)
BF206214 brain, neuroblastoma .a 685 to 1443 1 to 750       750/937
(80 %)
24 diff
(97.5 %id)
BI200025 brain, neuroblastoma .a 685 to 1412 1 to 731       731/731
(100 %)
8 diff
(99.0 %id)
BF317084 brain, neuroblastoma .a 690 to 1409 1 to 719       719/886
(81 %)
22 diff
(97.6 %id)
AK097157 Spleen .a 697 to 3354 1 to 2658   available from FLJ,   2658/2658
(100 %)
2 diff
(100.0 %id)
DA940258 Spleen .a 698 to 1283 2 to 587   capped   586/586
(100 %)
0 diff
(100 %id)
TI_1948122101   .a 826 to 1547 854 to 121       734/1247
(58 %)
28 diff
(97.8 %id)
BX342781   .a 865 to 1922 1049 to 10       1040/1111
(93 %)
18 diff
(98.4 %id)
TI_1948122451   .a 877 to 1547 805 to 128   fully sequenced,   678/805
(84 %)
0 diff
(100 %id)
TI_1948122620   .a 940 to 1547 735 to 123   fully sequenced,   613/735
(83 %)
1 diff
(99.9 %id)
TI_1948122271   .a 959 to 1547 713 to 122   fully sequenced,   592/713
(83 %)
1 diff
(99.9 %id)
AL161993 amygdala .a 986 to 3356 1 to 2375   tiling clone, available from DKFZ, AAA   2375/2375
(100 %)
2 diff
(100.0 %id)
AA365167 pineal body .a 1091 to 1329 1 to 240       240/243
(98 %)
4 diff
(98.4 %id)
AW382527 head_neck .a 1173 to 1540 374 to 7       368/380
(96 %)
10 diff
(97.4 %id)
DA277852 corpus callosum .a 1235 to 1730 2 to 498   capped   497/497
(100 %)
2 diff
(99.6 %id)
T81134 liver and spleen .a 1346 to 1733 9 to 414   fully sequenced,   406/414
(98 %)
27 diff
(93.5 %id)
T83087 liver and spleen .a 1346 to 1792 9 to 484   fully sequenced,   476/484
(98 %)
32 diff
(93.4 %id)
W00880 liver and spleen .a 1346 to 1538 9 to 198       190/210
(90 %)
5 diff
(97.7 %id)
AA456815 ovarian tumor, ovary .a 1364 to 1847 1 to 482       482/482
(100 %)
4 diff
(99.2 %id)
BE550881 carcinoid, lung .a 1412 to 1960 549 to 1       549/549
(100 %)
0 diff
(100 %id)
DB376076 placenta .a 1432 to 1961 526 to 1       526/599
(87 %)
14 diff
(97.7 %id)
BI488587 brain .a 1444 to 1942 1 to 501   AAA   501/501
(100 %)
15 diff
(97.1 %id)
TI_45379157   .a 1444 to 1942 67 to 567   AAA   501/567
(88 %)
6 diff
(99.0 %id)
AA807104 germinal center B cell .a 1513 to 1970 459 to 1       459/459
(100 %)
1 diff
(99.8 %id)
AW070411 pooled .a 1518 to 1961 444 to 1       444/444
(100 %)
0 diff
(100 %id)
AI214534 carcinoid, lung .a 1563 to 1960 397 to 1       397/399
(99 %)
1 diff
(99.8 %id)
H09747 whole brain .a 1579 to 1972 396 to 1       396/458
(86 %)
9 diff
(98.1 %id)
R41826 whole brain .a 1620 to 1970 356 to 1       356/356
(100 %)
5 diff
(98.6 %id)
AW135819   .a 1637 to 1978 342 to 1       342/342
(100 %)
0 diff
(100 %id)
AA365780 pineal body .a 1690 to 1961 1 to 275       275/275
(100 %)
2 diff
(99.3 %id)
T81086 liver and spleen .a 1715 to 1964 253 to 4   fully sequenced,   250/253
(98 %)
0 diff
(100 %id)
AA321783 brain, cerebellum .a 1720 to 1887 1 to 168       168/168
(100 %)
0 diff
(100 %id)
R88232 brain .a 1720 to 1948 1 to 230       230/230
(100 %)
1 diff
(99.6 %id)
R61630 whole brain .a 1722 to 1962 1 to 241       241/241
(100 %)
1 diff
(99.6 %id)
BM698832 eye, fetal eyes .a 1750 to 2228 32 to 509       478/509
(93 %)
6 diff
(98.9 %id)
T90551 liver and spleen .a 1762 to 1966 206 to 1   fully sequenced,   206/206
(100 %)
1 diff
(99.6 %id)
N73837 liver and spleen .a 1779 to 1963 185 to 1       185/185
(100 %)
0 diff
(100 %id)
H12924 whole brain .a 1918 to 2140 1 to 224   tiling clone,   224/224
(100 %)
1 diff
(99.6 %id)
H17272 whole brain .a 2262 to 2771 1 to 507       507/508
(99 %)
15 diff
(97.1 %id)
BM717881 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 2381 to 2802 1 to 422   fully sequenced,   422/422
(100 %)
0 diff
(100 %id)
TI_154041279   .a 2609 to 3348 825 to 95   AAA   731/885
(82 %)
24 diff
(97.3 %id)
TI_154050088   .a 2629 to 3348 838 to 125   AAA   714/929
(76 %)
20 diff
(97.9 %id)
TI_151732934   .a 2636 to 3348 802 to 91   AAA   712/949
(75 %)
6 diff
(99.4 %id)
BQ187030 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 2640 to 3325 1 to 685   fully sequenced,   685/685
(100 %)
8 diff
(98.9 %id)
BM932026 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 2705 to 3353 1 to 648   fully sequenced, AAA   648/648
(100 %)
1 diff
(99.9 %id)
CA413760 Chondrosarcoma Grade II, Left Pelvis .a 2711 to 3348 656 to 19   AAA   638/638
(100 %)
8 diff
(98.8 %id)
BU742097 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 2772 to 3354 601 to 19   fully sequenced, AAA   583/583
(100 %)
0 diff
(100 %id)
BM669615 eye, fetal eyes .a 2785 to 3354 588 to 19   AAA   570/570
(100 %)
1 diff
(99.9 %id)
CK300092 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 2796 to 3348 571 to 19   fully sequenced, AAA   553/553
(100 %)
1 diff
(99.9 %id)
CA449946 Chondrosarcoma, Left Pelvis .a 2813 to 3348 554 to 19   AAA   536/536
(100 %)
1 diff
(99.9 %id)
BQ012066 placenta .a 2817 to 3356 558 to 19   AAA   540/540
(100 %)
3 diff
(99.5 %id)
DB333130 Spleen .a 2823 to 3354 533 to 1       533/533
(100 %)
1 diff
(99.9 %id)
BQ012078 placenta .a 2835 to 3356 540 to 19   AAA   522/522
(100 %)
2 diff
(99.7 %id)
BX118605 whole brain .a 2853 to 3354 516 to 15   AAA   502/502
(100 %)
0 diff
(100 %id)
BQ012153 placenta .a 2861 to 3356 514 to 19   AAA   496/496
(100 %)
3 diff
(99.4 %id)
AA234676.
matches multiple genes
mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 2864 to 3256 1 to 392     also hits gene CBFA2T2 392/392
(100 %)
3 diff
(99.3 %id)
BM724783 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 2869 to 3359 1 to 491   fully sequenced, AAA   491/491
(100 %)
1 diff
(99.8 %id)
AA871995 pooled germ cell tumors .a 2901 to 3354 453 to 1       453/453
(100 %)
1 diff
(99.8 %id)
R60963 whole brain .a 2903 to 3356 499 to 34   AAA   466/468
(99 %)
27 diff
(94.3 %id)
AA973867 pooled germ cell tumors .a 2904 to 3354 451 to 1       451/451
(100 %)
1 diff
(99.8 %id)
AI016711 Kidney .a 2905 to 3354 471 to 22   AAA   450/450
(100 %)
0 diff
(100 %id)
H17273 whole brain .a 2950 to 3354 423 to 12   AAA   412/422
(97 %)
8 diff
(98.2 %id)
AI827031 adenocarcinoma, Pancreas .a 2971 to 3356 412 to 27   AAA   386/386
(100 %)
16 diff
(95.9 %id)
AW591994 pooled .a 2976 to 3355 383 to 4       380/383
(99 %)
0 diff
(100 %id)
BM685056 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 3003 to 3354 370 to 19   fully sequenced, AAA   352/352
(100 %)
0 diff
(100 %id)
AA235336 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 3009 to 3354 367 to 22   AAA   346/346
(100 %)
0 diff
(100 %id)
R88233 brain .a 3057 to 3319 263 to 1       263/263
(100 %)
0 diff
(100 %id)
AA813434   .a 3064 to 3355 295 to 4       292/295
(98 %)
0 diff
(100 %id)
BQ011774 placenta .a 3170 to 3356 205 to 19   AAA   187/187
(100 %)
2 diff
(99.0 %id)
BU741421 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 3284 to 3356 89 to 17   fully sequenced, AAA   73/73
(100 %)
1 diff
(98.7 %id)
FN140318 breast carcinoma .b 1 to 93 1 to 92   tiling clone,   92/92
(100 %)
3 diff
(96.8 %id)
H10879.
matches multiple genes
whole brain .b 20 to 431 1 to 415   tiling clone, also hits gene SLC24A2 415/415
(100 %)
11 diff
(97.4 %id)
BF662989 B-cells, primary B-cells from tonsils (cell line) .b 82 to 730 1 to 642   tiling clone,   642/911
(70 %)
32 diff
(96.5 %id)
CA389015 eye, RPE/choroid .b 129 to 417 1 to 290   tiling clone,   290/290
(100 %)
1 diff
(99.7 %id)
AA620701   .b 560 to 972 416 to 4   tiling clone,   413/416
(99 %)
1 diff
(99.8 %id)
? Gene Summary Gene on genome mRNA:.a, .b Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C