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Gene C3orf18TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
168 supporting clones for gene C3orf18 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BI256933 cervical carcinoma cell line, cervix .a 1 to 880 8 to 884 D7V P8I L11G L12C G13S ... tiling clone,   884/912
(96 %)
64 diff
(93.0 %id)
Z43737 brain, total brain .a 583 to 867 1 to 285   tiling clone,   285/290
(98 %)
4 diff
(98.7 %id)
DA101198 cerebellum .a 1136 to 1541 203 to 608   tiling clone, capped   406/607
(66 %)
6 diff
(99.1 %id)
Z39798 brain, total brain .a 1728 to 1999 273 to 1   tiling clone,   273/273
(100 %)
1 diff
(99.7 %id)
NM_016210.4   .b 1 to 2700 2 to 2701 exact RefSeq, AAA   2701/2701
(100 %)
0 diff
(100 %id)
DA717510   .b 25 to 555 2 to 533   tiling clone, capped   532/532
(100 %)
2 diff
(99.7 %id)
AL833938 uterus .b 41 to 2694 1 to 2654 A162V tiling clone, available from DKFZ, AAA   2654/2654
(100 %)
1 diff
(100.0 %id)
DA521860 brain .b 51 to 605 2 to 554   capped   553/553
(100 %)
2 diff
(99.7 %id)
AK313128 tongue, tumor tissue .b 126 to 1069 1 to 944 A162V     944/944
(100 %)
1 diff
(99.9 %id)
DA447986 tongue, tumor tissue .b 127 to 685 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
BX365701   .b 130 to 816 1 to 680       680/857
(79 %)
18 diff
(97.9 %id)
BX365700   .b 1526 to 2662 1092 to 1       1092/1105
(98 %)
82 diff
(92.6 %id)
NM_001171740.2   .c 1 to 2611 2 to 2612 exact RefSeq, AAA   2612/2612
(100 %)
0 diff
(100 %id)
DB166816 kidney, tumor tissue .c 1 to 373 2 to 374   tiling clone, capped   373/373
(100 %)
0 diff
(100 %id)
AI815756 brain, frontal lobe .c 15 to 343 1 to 328       328/328
(100 %)
6 diff
(98.2 %id)
BQ959810 leiomyosarcoma, uterus .c 20 to 950 1 to 935       929/935
(99 %)
27 diff
(97.2 %id)
DA292524 hippocampus .c 46 to 627 2 to 586   capped   585/585
(100 %)
3 diff
(99.5 %id)
DA365944 subthalamic nucleus .c 46 to 546 2 to 503   capped   502/502
(100 %)
1 diff
(99.9 %id)
DA578082   .c 46 to 585 2 to 542   capped   541/541
(100 %)
1 diff
(99.9 %id)
DA750599   .c 46 to 609 2 to 566   capped   565/565
(100 %)
1 diff
(99.9 %id)
DA877338 Prostate .c 46 to 611 2 to 568   capped   567/567
(100 %)
1 diff
(99.9 %id)
DA762696 tongue .c 51 to 635 2 to 587   capped   586/586
(100 %)
2 diff
(99.7 %id)
DR002416 fetal brain .c 64 to 677 8 to 619       612/619
(98 %)
12 diff
(98.1 %id)
DA199483 brain .c 89 to 674 2 to 587   capped   586/586
(100 %)
0 diff
(100 %id)
BI757259 brain .c 90 to 1001 1 to 922 R15Q T43P F44L N45M D46T ...     923/939
(98 %)
51 diff
(94.6 %id)
TI_57221566   .c 90 to 1001 64 to 985 R15Q T43P F44L N45M D46T ...     923/1002
(92 %)
54 diff
(94.7 %id)
BC034766 Brain, Lung, Testis, adult, pooled whole .c 127 to 2605 1 to 2479 A162V tiling clone, available from MGC, AAA   2479/2479
(100 %)
1 diff
(100.0 %id)
BI819497 pooled brain, lung, testis .c 127 to 1097 1 to 971 T137D T138Y L139S P140C S141L ...     969/995
(97 %)
35 diff
(96.5 %id)
TI_57199352   .c 127 to 1097 37 to 1007 T137D T138Y L139S P140C S141L ...     969/1031
(93 %)
41 diff
(96.1 %id)
DB263643 uterus .c 135 to 703 2 to 570   capped   569/570
(99 %)
1 diff
(99.9 %id)
DA556347   .c 151 to 710 2 to 561   capped   560/560
(100 %)
1 diff
(99.9 %id)
AK124438 cerebellum .c 160 to 2611 1 to 2452 A162V tiling clone, available from FLJ,   2452/2452
(100 %)
2 diff
(100.0 %id)
DA053974 cerebellum .c 161 to 883 2 to 726   capped   725/725
(100 %)
6 diff
(99.2 %id)
DB169666 kidney, tumor tissue .c 163 to 728 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA687916   .c 168 to 711 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
DA197737 brain .c 183 to 713 2 to 532   capped   531/532
(99 %)
1 diff
(99.9 %id)
DB296418 cerebellum .c 2124 to 2605 485 to 7       479/487
(98 %)
0 diff
(100 %id)
NM_001171741.2   .d 1 to 2404 4 to 2407 exact RefSeq, AAA   2407/2407
(100 %)
0 diff
(100 %id)
DB021087 testis .d 13 to 524 2 to 513   tiling clone, capped   512/512
(100 %)
0 diff
(100 %id)
AF188706   .d 33 to 2398 1 to 2366 A162V tiling clone,   2366/2366
(100 %)
2 diff
(100.0 %id)
DB046393 testis .d 41 to 607 2 to 568   capped   567/567
(100 %)
1 diff
(99.9 %id)
AI929076 brain, frontal lobe .d 152 to 325 1 to 173       173/173
(100 %)
1 diff
(99.5 %id)
BP258978 heart .d 163 to 744 1 to 582       582/582
(100 %)
3 diff
(99.5 %id)
TI_1948152522   .d 283 to 772 128 to 617       490/691
(70 %)
8 diff
(98.9 %id)
TI_1948152652   .d 283 to 772 126 to 615       490/592
(82 %)
8 diff
(98.7 %id)
TI_1948152803   .d 283 to 772 124 to 613       490/733
(66 %)
8 diff
(99.0 %id)
TI_1948152931   .d 283 to 772 127 to 616       490/780
(62 %)
8 diff
(99.0 %id)
AA813493   .d 465 to 885 420 to 2       419/420
(99 %)
5 diff
(98.9 %id)
N72743 multiple sclerosis lesions .d 527 to 947 1 to 425       425/425
(100 %)
13 diff
(97.0 %id)
H05327 whole brain .d 649 to 1197 1 to 566       566/566
(100 %)
32 diff
(94.4 %id)
BF850669 lung_normal .d 657 to 1114 458 to 3     Submitted on the opposite strand 456/458
(99 %)
0 diff
(100 %id)
AI243229 pooled .d 718 to 1058 349 to 9       341/349
(97 %)
0 diff
(100 %id)
BM459535 leiomyosarcoma, uterus .d 744 to 1167 1 to 424       424/1033
(41 %)
9 diff
(99.2 %id)
R12292 whole brain .d 903 to 1383 1 to 490       490/492
(99 %)
16 diff
(96.8 %id)
BM821057 stomach .d 925 to 1438 1 to 514       514/514
(100 %)
0 diff
(100 %id)
CD243123 brain, Pituitary .d 929 to 1754 14 to 845       832/873
(95 %)
14 diff
(98.4 %id)
BU186231 epithelioid carcinoma, Pancreas .d 1056 to 1718 1 to 667       667/950
(70 %)
29 diff
(97.0 %id)
AW176140 breast .d 1096 to 1414 324 to 6       319/365
(87 %)
0 diff
(100 %id)
AW369757 breast .d 1096 to 1449 20 to 373       354/373
(94 %)
6 diff
(98.4 %id)
CN363278 embryonic stem cells, DMSO-treated H9 cellline .d 1107 to 1446 14 to 354       341/354
(96 %)
6 diff
(98.4 %id)
BQ309111 breast .d 1146 to 1372 1 to 220       220/220
(100 %)
10 diff
(95.5 %id)
BQ308886 breast .d 1148 to 1372 1 to 226       226/226
(100 %)
4 diff
(98.3 %id)
CK003252 brain/CNS, Human Brain - Cerebellar Cortex .d 1234 to 1894 1 to 659       659/660
(99 %)
4 diff
(99.4 %id)
Z19384 leg muscle, skeletal muscle .d 1305 to 1613 1 to 312       312/335
(93 %)
10 diff
(97.1 %id)
T31218 brain .d 1362 to 1557 1 to 196       196/196
(100 %)
0 diff
(100 %id)
TI_151772338   .d 1376 to 1975 82 to 680       599/1100
(54 %)
22 diff
(98.0 %id)
TI_149292350   .d 1512 to 2398 940 to 72   AAA   869/932
(93 %)
51 diff
(94.6 %id)
Z28489 leg muscle, skeletal muscle .d 1529 to 1773 246 to 2       245/246
(99 %)
0 diff
(100 %id)
BM923067 leukocyte .d 1564 to 2403 14 to 856       843/1071
(78 %)
9 diff
(99.2 %id)
BE618662 eye, retinoblastoma .d 1601 to 2383 788 to 2       787/788
(99 %)
0 diff
(100 %id)
BE618424 eye, retinoblastoma .d 1602 to 2357 1 to 750       750/923
(81 %)
17 diff
(98.2 %id)
BU621021 cell lines, Chondrosarcoma .d 1651 to 2398 763 to 19   AAA   745/745
(100 %)
3 diff
(99.6 %id)
BM974542 lung .d 1661 to 2398 754 to 19   AAA   736/739
(99 %)
2 diff
(99.8 %id)
BQ182296 Knee, Osteoarthritic Cartilage .d 1664 to 2398 751 to 19   AAA   733/733
(100 %)
2 diff
(99.8 %id)
AA252966 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .d 1701 to 2156 16 to 470   fully sequenced,   455/470
(96 %)
6 diff
(98.8 %id)
BU634375 cell lines, Chondrosarcoma .d 1731 to 2398 686 to 19   AAA   668/668
(100 %)
1 diff
(99.9 %id)
BM702664 eye, Retina Foveal and Macular .d 1769 to 2398 1 to 630   AAA   630/630
(100 %)
2 diff
(99.7 %id)
BM508252 insulinoma, Pancreas .d 1844 to 2398 570 to 16   AAA   555/561
(98 %)
0 diff
(100 %id)
BM510440 insulinoma, Pancreas .d 1844 to 2361 8 to 525       518/525
(98 %)
6 diff
(98.9 %id)
CK823712 insulinoma, Pancreas .d 1844 to 2392 8 to 556       549/556
(98 %)
6 diff
(99.0 %id)
AI300189 2 pooled tumors (clear cell type), Kidney .d 1854 to 2399 550 to 5       546/550
(99 %)
0 diff
(100 %id)
BU783139 insulinoma, Pancreas .d 1858 to 2398 556 to 16   AAA   541/541
(100 %)
0 diff
(100 %id)
AI928807 brain, frontal lobe .d 1860 to 2398 551 to 14   AAA   538/538
(100 %)
1 diff
(99.9 %id)
AI573215 anaplastic oligodendroglioma, brain .d 1875 to 2404 530 to 1       530/530
(100 %)
0 diff
(100 %id)
BX111687 whole brain .d 1876 to 2398 537 to 15   AAA   523/523
(100 %)
0 diff
(100 %id)
AA716515 heart .d 1909 to 2404 512 to 18   AAA   495/495
(100 %)
4 diff
(99.2 %id)
AI768160 pooled .d 1916 to 2399 490 to 7       484/490
(98 %)
0 diff
(100 %id)
AI571325 anaplastic oligodendroglioma, brain .d 1918 to 2404 487 to 1       487/487
(100 %)
0 diff
(100 %id)
AI609581 ovary, tumor, 5 pooled (see description) .d 1924 to 2398 476 to 1       476/476
(100 %)
1 diff
(99.8 %id)
AA845497 parathyroid gland, parathyroid tumor .d 1926 to 2398 484 to 13   AAA   472/472
(100 %)
7 diff
(98.6 %id)
BM546211 ovary (pool of 3) .d 1927 to 2398 3 to 474   AAA   472/474
(99 %)
6 diff
(98.8 %id)
AA772057 parathyroid gland, parathyroid tumor .d 1937 to 2398 473 to 13   AAA   461/461
(100 %)
1 diff
(99.8 %id)
AI032398   .d 1937 to 2399 465 to 3       463/465
(99 %)
0 diff
(100 %id)
AI572834 Kidney .d 1941 to 2395 455 to 1       455/455
(100 %)
0 diff
(100 %id)
AW294857   .d 1947 to 2398 469 to 18   AAA   452/452
(100 %)
1 diff
(99.8 %id)
BU734413 eye, RPE and Choroid .d 1951 to 2398 467 to 20   AAA   448/448
(100 %)
2 diff
(99.6 %id)
AI633077 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .d 1955 to 2397 443 to 2       442/443
(99 %)
0 diff
(100 %id)
BE550686 carcinoid, lung .d 1958 to 2392 453 to 19   AAA   435/435
(100 %)
0 diff
(100 %id)
AI689884 carcinoid, lung .d 1964 to 2392 447 to 19   AAA   429/429
(100 %)
1 diff
(99.8 %id)
H05277 whole brain .d 1973 to 2398 449 to 13   AAA   437/444
(98 %)
20 diff
(95.5 %id)
N58879 multiple sclerosis lesions .d 1974 to 2395 425 to 1       425/425
(100 %)
7 diff
(98.4 %id)
AW768674 colon, moderately-differentiated adenocarcinoma .d 1977 to 2399 425 to 2       424/425
(99 %)
0 diff
(100 %id)
AI800060 Prostate .d 1999 to 2398 416 to 17   AAA   400/400
(100 %)
0 diff
(100 %id)
AI093690 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .d 2031 to 2399 370 to 4       367/370
(99 %)
0 diff
(100 %id)
AA725790   .d 2032 to 2399 375 to 8       368/375
(98 %)
0 diff
(100 %id)
H41284 brain .d 2035 to 2398 369 to 1       369/369
(100 %)
7 diff
(98.2 %id)
BM023554 Islets of Langerhans, Pancreas .d 2042 to 2398 1 to 357   fully sequenced, AAA   357/357
(100 %)
5 diff
(98.6 %id)
AA405501   .d 2062 to 2399 340 to 3       338/340
(99 %)
0 diff
(100 %id)
AA904886 pooled .d 2072 to 2405 337 to 3       335/337
(99 %)
0 diff
(100 %id)
AI001740   .d 2084 to 2396 315 to 4       312/315
(99 %)
0 diff
(100 %id)
AW385603 leiomios .d 2094 to 2358 1 to 265       265/310
(85 %)
14 diff
(95.5 %id)
AW385605 leiomios .d 2107 to 2358 1 to 252       252/297
(84 %)
16 diff
(94.7 %id)
AA908974 pooled .d 2109 to 2404 307 to 13   AAA   295/295
(100 %)
4 diff
(98.7 %id)
F09172 brain, total brain .d 2110 to 2398 289 to 1       289/293
(98 %)
0 diff
(100 %id)
AI632398 serous papillary carcinoma, high grade, 2pooled tumors, uterus .d 2112 to 2399 288 to 1       288/288
(100 %)
0 diff
(100 %id)
AA235000 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .d 2131 to 2399 273 to 4   fully sequenced,   270/273
(98 %)
0 diff
(100 %id)
AI001974   .d 2144 to 2396 256 to 4       253/256
(98 %)
0 diff
(100 %id)
AI702505 adenocarcinoma, Pancreas .d 2151 to 2399 253 to 4       250/253
(98 %)
0 diff
(100 %id)
AI701865 carcinoid, lung .d 2153 to 2392 258 to 19   AAA   240/240
(100 %)
1 diff
(99.6 %id)
AW079586 colon, moderately differentiated adenocarcinoma .d 2154 to 2399 248 to 1       248/248
(100 %)
1 diff
(99.6 %id)
AA909559 pooled .d 2203 to 2405 205 to 3   tiling clone,   203/205
(99 %)
0 diff
(100 %id)
AI468295 Prostate .d 2212 to 2398 187 to 1       187/187
(100 %)
0 diff
(100 %id)
BM023262 Islets of Langerhans, Pancreas .d 2227 to 2403 181 to 5   fully sequenced,   177/181
(97 %)
5 diff
(97.3 %id)
CN478979 Human Lung Epithelial cells, lung .d 2227 to 2398 190 to 19   AAA   172/172
(100 %)
5 diff
(97.1 %id)
EC534271 Prostate .d 2261 to 2352 18 to 106       89/108
(82 %)
5 diff
(95.4 %id)
AJ573843 pectoral muscle (after mastectomy) .d 2322 to 2397 1 to 77       77/90
(85 %)
3 diff
(96.7 %id)
NM_001171743.2   .e 1 to 2390 2 to 2391 exact RefSeq, AAA   2391/2391
(100 %)
0 diff
(100 %id)
AK308074   .e 116 to 1605 1 to 1488 R127T P128Q S129P R130A L131G ... tiling clone,   1488/1488
(100 %)
2 diff
(99.9 %id)
DA719621   .e 117 to 697 2 to 581   capped   580/580
(100 %)
5 diff
(99.2 %id)
DA066428 cerebellum .f 1 to 544 8 to 551 A136V tiling clone, capped   544/544
(100 %)
2 diff
(99.7 %id)
DA822373 pericardium .g 1 to 549 10 to 564 A25C R26S G27L C28D G29A ... tiling clone, capped   563/563
(100 %)
8 diff
(98.6 %id)
DA073241 cerebellum .g 1 to 506 2 to 507 A121V tiling clone, capped   506/506
(100 %)
1 diff
(99.9 %id)
CB149258 Liver .h 1 to 562 2 to 563 A34S     563/563
(100 %)
2 diff
(99.7 %id)
DA504094 brain .h 1 to 550 2 to 551 Q55H T56A P57G G58L L59G ... tiling clone, capped   550/550
(100 %)
5 diff
(99.1 %id)
BJ995808 hepatoblastoma .h 8 to 548 1 to 541 exact     541/541
(100 %)
0 diff
(100 %id)
DA559186   .h 17 to 508 2 to 495 D47G L48S G49R S50V D51G ... capped   494/494
(100 %)
4 diff
(99.2 %id)
AK309486 heart .h 21 to 916 1 to 896 exact tiling clone,   896/896
(100 %)
2 diff
(99.8 %id)
BP361308 thalamus .h 21 to 599 1 to 582 exact     582/582
(100 %)
4 diff
(99.4 %id)
DA561419 heart .h 22 to 584 2 to 567 D47G L48S G49R S50V D51G ... capped   566/567
(99 %)
5 diff
(99.2 %id)
DA589224 lung .h 22 to 345 2 to 325   capped   324/324
(100 %)
1 diff
(99.7 %id)
DA635783 Kidney .h 22 to 605 2 to 586 D47G L48S G49R S50V D51G ... capped   585/585
(100 %)
3 diff
(99.5 %id)
DA921792 small intestine .h 22 to 599 2 to 579 exact capped   578/578
(100 %)
1 diff
(99.9 %id)
DA761634 tongue .h 33 to 472 2 to 443 D47G L48S G49R S50V D51G ... capped   442/442
(100 %)
2 diff
(99.6 %id)
DA204972 brain .h 52 to 613 2 to 564   capped   563/563
(100 %)
4 diff
(99.3 %id)
DA175768 amygdala .h 65 to 627 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
BM925014 pooled lung and spleen .h 78 to 1001 1 to 930   tiling clone,   930/1044
(89 %)
15 diff
(98.6 %id)
DA091387 cerebellum .h 93 to 530 2 to 439   capped   438/464
(94 %)
3 diff
(99.4 %id)
DA582666 lung .h 93 to 617 2 to 526   capped   525/525
(100 %)
1 diff
(99.9 %id)
DB023101 testis .h 93 to 636 2 to 545   capped   544/544
(100 %)
2 diff
(99.7 %id)
CA396931 eye, RPE/choroid .h 109 to 662 1 to 554       554/554
(100 %)
2 diff
(99.7 %id)
R35537 whole brain .h 112 to 544 1 to 435       435/435
(100 %)
19 diff
(95.7 %id)
BM545476 brain, hippocampus .h 115 to 897 1 to 798       798/1024
(77 %)
21 diff
(98.0 %id)
DA600242   .h 117 to 685 2 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
DA549293   .h 127 to 695 2 to 570   capped   569/569
(100 %)
2 diff
(99.7 %id)
DA535127 heart .h 146 to 698 2 to 554   tiling clone, capped   553/553
(100 %)
1 diff
(99.9 %id)
BI823740 pooled brain, lung, testis .h 147 to 824 1 to 691       689/806
(85 %)
29 diff
(96.5 %id)
TI_57202515   .h 147 to 824 72 to 762       689/877
(78 %)
32 diff
(96.4 %id)
BJ995809 hepatoblastoma .h 1717 to 2155 439 to 1   tiling clone,   439/439
(100 %)
0 diff
(100 %id)
R51105 whole brain .h 1757 to 2186 442 to 8   tiling clone,   435/442
(98 %)
0 diff
(100 %id)
AK311093 cerebellum .i 1 to 637 2 to 638 exact tiling clone,   638/638
(100 %)
1 diff
(99.9 %id)
DA061160 cerebellum .i 1 to 563 2 to 564 exact capped   563/564
(99 %)
2 diff
(99.7 %id)
BI837400 pooled pancreas and spleen .i 63 to 660 1 to 601   tiling clone,   601/724
(83 %)
18 diff
(97.6 %id)
DA094598 cerebellum .j 1 to 530 2 to 531 exact tiling clone, capped   530/530
(100 %)
0 diff
(100 %id)
DA475343   .k 1 to 564 2 to 565 A67V tiling clone, capped   564/564
(100 %)
1 diff
(99.9 %id)
TI_57165278   .k 50 to 906 23 to 631       622/754
(82 %)
72 diff
(90.5 %id)
DB027651 testis .l 1 to 580 4 to 583 R55C tiling clone, capped   582/582
(100 %)
1 diff
(99.9 %id)
DB045703 testis .l 1 to 541 4 to 545 G12W T13D P14A P15A L16S ... capped   544/544
(100 %)
3 diff
(99.5 %id)
DB051065 testis .l 1 to 569 2 to 570 R55C capped   569/569
(100 %)
2 diff
(99.7 %id)
DA231746 brain .m 1 to 559 2 to 560 exact tiling clone, capped   559/559
(100 %)
0 diff
(100 %id)
BF352621 head_neck Gene C3orf18, variant not shown              
AK130227 Pancreas Gene C3orf18, variant not shown       available from FLJ, Suspected internal deletion, this clone was ignored    
BI041009 nervous_tumor Gene C3orf18, variant not shown         This clone was ignored    
CV425805 nervous_tumor Gene C3orf18, variant not shown              
CN285510 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells Gene C3orf18, variant not shown              
DB300126 cerebellum Gene C3orf18, variant not shown              
DA114880 cerebellum Gene C3orf18, variant not shown       capped      
DA166650 amygdala Gene C3orf18, variant not shown       capped Suspected internal deletion, this clone was ignored    
DA168639 amygdala Gene C3orf18, variant not shown       capped This clone was ignored    
DB316064 brain Gene C3orf18, variant not shown         This clone was ignored    
DA505486 brain Gene C3orf18, variant not shown       capped This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C