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Gene HSBP1L1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
118 supporting clones for gene HSBP1L1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BQ939757 epidermoid carcinoma, cell line, lung HSBP1L1.a 1 to 895 1 to 904 T23I S113R tiling clone,   904/911
(99 %)
22 diff
(97.6 %id)
NM_001136180.1   HSBP1L1.a 195 to 942 1 to 748   RefSeq, AAA   748/748
(100 %)
0 diff
(100 %id)
BQ638755 eye, retina HSBP1L1.a 223 to 812 1 to 589   tiling clone,   589/589
(100 %)
4 diff
(99.4 %id)
BX397585 Placenta Cot 25-normalized HSBP1L1.a 230 to 932 1 to 701   fully sequenced,   701/701
(100 %)
5 diff
(99.3 %id)
CB988247 Human Placenta, placenta HSBP1L1.a 247 to 936 17 to 706   AAA   690/706
(97 %)
12 diff
(98.4 %id)
TI_2016726515   HSBP1L1.a 265 to 790 42 to 566       525/1068
(49 %)
10 diff
(99.1 %id)
TI_2016726527   HSBP1L1.a 265 to 790 596 to 72       525/1259
(41 %)
5 diff
(99.7 %id)
TI_2016727261   HSBP1L1.a 265 to 790 43 to 567       525/1289
(40 %)
10 diff
(99.3 %id)
CK429425 eye, lacrimal gland HSBP1L1.a 266 to 882 1 to 616       616/616
(100 %)
2 diff
(99.7 %id)
BM727012 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid HSBP1L1.a 266 to 918 1 to 652   fully sequenced,   652/652
(100 %)
2 diff
(99.7 %id)
BC017654 Lung, carcinoma, large cellundifferentiated. HSBP1L1.a 267 to 927 1 to 660   available from MGC, AAA   660/660
(100 %)
2 diff
(99.7 %id)
AA074407 Pancreas HSBP1L1.a 272 to 693 1 to 423       423/423
(100 %)
13 diff
(97.0 %id)
BC157848 Brain, cerebral cortex, PCR rescued clones HSBP1L1.a 273 to 789 1 to 516       516/516
(100 %)
3 diff
(99.5 %id)
AA195167 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus HSBP1L1.a 274 to 705 2 to 433   fully sequenced,   432/433
(99 %)
8 diff
(98.2 %id)
BE563229 adenocarcinoma, Pancreas HSBP1L1.a 287 to 924 1 to 633       633/633
(100 %)
6 diff
(99.1 %id)
BE877222 large cell carcinoma, undifferentiated, lung HSBP1L1.a 288 to 927 1 to 640   available from MGC, AAA   640/640
(100 %)
8 diff
(98.8 %id)
CD673083 eye, Iris HSBP1L1.a 301 to 928 15 to 641       627/641
(97 %)
9 diff
(98.6 %id)
AI660818 colon, colonic mucosa from 3 patients with Crohn'sdisease HSBP1L1.a 382 to 932 553 to 2       552/553
(99 %)
0 diff
(100 %id)
AW006817 colon HSBP1L1.a 382 to 932 553 to 3       551/553
(99 %)
1 diff
(99.9 %id)
AI309831 2 pooled tumors (clear cell type), Kidney HSBP1L1.a 403 to 944 545 to 5       541/545
(99 %)
1 diff
(99.9 %id)
AA683587 heart HSBP1L1.a 415 to 927 513 to 1       513/513
(100 %)
3 diff
(99.5 %id)
AA075143   HSBP1L1.a 432 to 944 513 to 1       513/514
(99 %)
4 diff
(99.3 %id)
BX397584 Placenta Cot 25-normalized HSBP1L1.a 436 to 896 459 to 1   fully sequenced,   459/459
(100 %)
4 diff
(99.2 %id)
BU753470 placenta HSBP1L1.a 468 to 929 477 to 16   tiling clone, AAA   462/470
(98 %)
0 diff
(100 %id)
AW004931 colon HSBP1L1.a 469 to 944 475 to 1   tiling clone,   475/477
(99 %)
2 diff
(99.6 %id)
BX095082 poorly differentiated adenocarcinoma withsignet ring cell features, stomach HSBP1L1.a 475 to 927 466 to 15   AAA   452/452
(100 %)
2 diff
(99.6 %id)
TI_149281640   HSBP1L1.a 477 to 937 539 to 80   AAA   460/816
(56 %)
4 diff
(99.6 %id)
BU679612 lung, Primary Lung Epithelial Cells HSBP1L1.a 477 to 937 478 to 19   AAA   460/467
(98 %)
4 diff
(99.2 %id)
BM702510 eye, human retina HSBP1L1.a 484 to 937 1 to 453   AAA   453/453
(100 %)
2 diff
(99.6 %id)
BM714223 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid HSBP1L1.a 484 to 937 1 to 453   AAA   453/453
(100 %)
2 diff
(99.6 %id)
AI128868 anaplastic oligodendroglioma, brain HSBP1L1.a 490 to 942 452 to 1       452/452
(100 %)
1 diff
(99.8 %id)
AW802439 uterus HSBP1L1.a 497 to 902 1 to 406       406/406
(100 %)
6 diff
(98.6 %id)
AW802600 uterus HSBP1L1.a 497 to 843 1 to 347       347/379
(91 %)
6 diff
(98.5 %id)
AW802602 uterus HSBP1L1.a 497 to 885 1 to 387       387/387
(100 %)
9 diff
(97.7 %id)
AW802604 uterus HSBP1L1.a 497 to 859 1 to 363       363/363
(100 %)
4 diff
(98.9 %id)
AW802607 uterus HSBP1L1.a 497 to 894 1 to 398       398/398
(100 %)
5 diff
(98.8 %id)
AW802561 uterus HSBP1L1.a 498 to 907 416 to 7       410/416
(98 %)
3 diff
(99.3 %id)
AI457910 pooled HSBP1L1.a 498 to 932 437 to 4       434/437
(99 %)
1 diff
(99.8 %id)
BU741266 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid HSBP1L1.a 499 to 928 447 to 19   fully sequenced, AAA   429/429
(100 %)
3 diff
(99.4 %id)
AI933386 anaplastic oligodendroglioma, brain HSBP1L1.a 503 to 902 421 to 21       401/421
(95 %)
0 diff
(100 %id)
BQ010619 placenta HSBP1L1.a 505 to 929 442 to 18   AAA   425/425
(100 %)
2 diff
(99.6 %id)
BQ328919 lung_normal HSBP1L1.a 517 to 847 1 to 332       332/332
(100 %)
4 diff
(98.8 %id)
AA505434 breast HSBP1L1.a 532 to 932 402 to 3       400/402
(99 %)
0 diff
(100 %id)
AW802589 uterus HSBP1L1.a 540 to 885 1 to 346       346/346
(100 %)
3 diff
(99.2 %id)
AI190254 heart HSBP1L1.a 556 to 936 382 to 3       380/388
(97 %)
0 diff
(100 %id)
BQ360743 ovary HSBP1L1.a 566 to 878 334 to 21       314/340
(92 %)
0 diff
(100 %id)
BE003740 breast_normal HSBP1L1.a 567 to 907 347 to 7     Submitted on the opposite strand 341/347
(98 %)
0 diff
(100 %id)
BQ007472 placenta HSBP1L1.a 574 to 937 380 to 18   AAA   363/363
(100 %)
0 diff
(100 %id)
AI369322 anaplastic oligodendroglioma, brain HSBP1L1.a 575 to 942 370 to 1       370/370
(100 %)
10 diff
(97.3 %id)
F29822 pectoral muscle (after mastectomy) HSBP1L1.a 578 to 886 1 to 308       308/308
(100 %)
3 diff
(99.1 %id)
AI017411 Kidney HSBP1L1.a 602 to 928 326 to 1       326/326
(100 %)
1 diff
(99.7 %id)
AA480199 colon HSBP1L1.a 627 to 939 314 to 3       312/314
(99 %)
0 diff
(100 %id)
BF111575 pooled HSBP1L1.a 640 to 942 315 to 14   AAA   302/302
(100 %)
2 diff
(99.4 %id)
AA194955 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus HSBP1L1.a 675 to 927 252 to 1   fully sequenced,   252/252
(100 %)
11 diff
(95.7 %id)
AI886671 poorly differentiated adenocarcinoma withsignet ring cell features, stomach HSBP1L1.a 686 to 927 245 to 1       245/250
(98 %)
7 diff
(97.2 %id)
AI623115 Prostate HSBP1L1.a 723 to 928 208 to 3       206/208
(99 %)
0 diff
(100 %id)
BM999160 lung, Lung Focal Fibrosis HSBP1L1.a 724 to 942 237 to 19   AAA   219/274
(79 %)
1 diff
(99.7 %id)
AA074308 Pancreas HSBP1L1.a 747 to 928 185 to 2       184/196
(93 %)
0 diff
(100 %id)
C02021   HSBP1L1.a 786 to 927 1 to 142       142/142
(100 %)
0 diff
(100 %id)
BX409995 brain, fetal brain HSBP1L1.a 812 to 944 1 to 133       133/133
(100 %)
7 diff
(94.8 %id)
FN152678 breast carcinoma HSBP1L1.a 861 to 940 1 to 81       81/85
(95 %)
2 diff
(97.7 %id)
W28028 eye, retina HSBP1L1.b-u 1 to 420 9 to 423   tiling clone,   415/455
(91 %)
10 diff
(97.9 %id)
TI_149315521   HSBP1L1.b-u 352 to 1196 909 to 77   tiling clone, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 833/1042
(79 %)
0 diff
(100 %id)
CB243988 Human Lung Epithelial cells, lung HSBP1L1.b-u 429 to 1196 780 to 14   tiling clone, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 767/780
(98 %)
0 diff
(100 %id)
BQ045395 lung, Primary Lung Cystic Fibrosis EpithelialCells HSBP1L1.b-u 440 to 1196 768 to 14   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 755/768
(98 %)
0 diff
(100 %id)
AW748175 breast HSBP1L1.b-u 441 to 883 9 to 452       444/452
(98 %)
6 diff
(98.7 %id)
CR619894 fetal brain HSBP1L1.b-u 474 to 1203 1 to 730   tiling clone,   730/730
(100 %)
0 diff
(100 %id)
BX442290 brain, fetal brain HSBP1L1.b-u 474 to 1203 1 to 729       729/729
(100 %)
3 diff
(99.6 %id)
BI062545 uterus_tumor HSBP1L1.b-u 529 to 1063 540 to 8       533/540
(98 %)
0 diff
(100 %id)
BI061531 uterus_tumor HSBP1L1.b-u 616 to 1134 518 to 1       518/518
(100 %)
2 diff
(99.7 %id)
BI062153 uterus_tumor HSBP1L1.b-u 619 to 1134 515 to 1       515/515
(100 %)
1 diff
(99.9 %id)
BM504031 Pancreas, Purified pancreatic islet HSBP1L1.b-u 649 to 1120 1 to 471       471/471
(100 %)
3 diff
(99.4 %id)
T53523 placenta HSBP1L1.b-u 690 to 1060 1 to 378       378/388
(97 %)
13 diff
(96.7 %id)
AW305090 brain, three pooled meningiomas HSBP1L1.b-u 699 to 1208 514 to 6       509/514
(99 %)
0 diff
(100 %id)
AA569431   HSBP1L1.b-u 753 to 1176 1 to 423       423/425
(99 %)
6 diff
(98.6 %id)
BM510178 Pancreas, Purified pancreatic islet HSBP1L1.b-u 754 to 1200 447 to 2       446/447
(99 %)
0 diff
(100 %id)
H26602 breast HSBP1L1.b-u 754 to 1184 434 to 1     Submitted on the opposite strand 434/435
(99 %)
16 diff
(96.4 %id)
AA642293 germinal center B cell HSBP1L1.b-u 778 to 1196 439 to 22   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 418/439
(95 %)
0 diff
(100 %id)
AI708906 aorta HSBP1L1.b-u 811 to 1184 380 to 8       373/380
(98 %)
0 diff
(100 %id)
CK821607 Pancreas, Purified pancreatic islet HSBP1L1.b-u 1190 to 1636 1 to 447   tiling clone, fully sequenced,   447/447
(100 %)
6 diff
(98.7 %id)
CK821606 Pancreas, Purified pancreatic islet HSBP1L1.b-u 1606 to 2127 522 to 1   tiling clone, fully sequenced,   522/522
(100 %)
0 diff
(100 %id)
CX756373 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass HSBP1L1.b-u 1955 to 2729 765 to 1   tiling clone,   765/811
(94 %)
11 diff
(98.7 %id)
BG656019 Pancreas, Purified pancreatic islet HSBP1L1.c 1 to 517 1 to 516 R39I K53N tiling clone,   516/516
(100 %)
7 diff
(98.7 %id)
BM312001 Pancreas, Purified pancreatic islet HSBP1L1.c 40 to 640 1 to 600 K53N tiling clone,   600/600
(100 %)
2 diff
(99.7 %id)
BM311408 Pancreas, Purified pancreatic islet HSBP1L1.c 99 to 643 544 to 1       544/544
(100 %)
2 diff
(99.7 %id)
CA444419 lung, Metastatic Chondrosarcoma HSBP1L1.c 138 to 659 539 to 19   tiling clone, AAA   521/521
(100 %)
2 diff
(99.7 %id)
BG656326 Pancreas, Purified pancreatic islet HSBP1L1.c 171 to 644 473 to 1     Submitted on the opposite strand 473/473
(100 %)
2 diff
(99.6 %id)
DA919112 small intestine HSBP1L1.d 1 to 563 2 to 564 exact tiling clone, capped   563/563
(100 %)
1 diff
(99.9 %id)
AI984344 Kidney HSBP1L1.d 78 to 289 212 to 1       212/212
(100 %)
0 diff
(100 %id)
DA866171 Prostate HSBP1L1.d 406 to 912 2 to 506   tiling clone, capped   505/505
(100 %)
8 diff
(98.5 %id)
AK001829 placenta HSBP1L1.d 1086 to 2142 1 to 1056   tiling clone, available from FLJ,   1056/1056
(100 %)
4 diff
(99.7 %id)
AU134911 placenta HSBP1L1.d 1087 to 1807 2 to 734   fully sequenced, capped   733/733
(100 %)
12 diff
(98.4 %id)
BF755162 colon HSBP1L1.d 1098 to 1483 388 to 3     Submitted on the opposite strand 386/388
(99 %)
0 diff
(100 %id)
BQ371356 prostate_normal HSBP1L1.d 1202 to 1555 354 to 1       354/354
(100 %)
16 diff
(95.5 %id)
BX348330 Placenta Cot 25-normalized HSBP1L1.d 1435 to 2147 20 to 732   tiling clone,   713/732
(97 %)
11 diff
(98.5 %id)
BE813290 breast_normal HSBP1L1.d 1450 to 1774 1 to 322   tiling clone,   322/322
(100 %)
8 diff
(97.6 %id)
TI_149272898   HSBP1L1.d 1510 to 2151 726 to 85   AAA   642/1011
(63 %)
14 diff
(98.7 %id)
BQ019222 lung, Metastatic Chondrosarcoma HSBP1L1.d 1525 to 2151 641 to 19   AAA   623/628
(99 %)
7 diff
(98.9 %id)
N32189 melanocyte HSBP1L1.d 1556 to 2152 595 to 1   tiling clone,   595/599
(99 %)
10 diff
(98.4 %id)
N32191 melanocyte HSBP1L1.d 1556 to 2152 591 to 1       591/595
(99 %)
7 diff
(98.9 %id)
BU675395 lung, Primary Lung Epithelial Cells HSBP1L1.d 1603 to 2151 566 to 19   AAA   548/548
(100 %)
4 diff
(99.3 %id)
DB331838 small intestine HSBP1L1.d 1618 to 2142 525 to 1       525/525
(100 %)
4 diff
(99.3 %id)
AW189983 adenocarcinoma, Pancreas HSBP1L1.d 1653 to 2143 491 to 2   tiling clone,   490/491
(99 %)
1 diff
(99.8 %id)
AU155716 placenta HSBP1L1.d 1771 to 2142 370 to 1   fully sequenced,   370/370
(100 %)
5 diff
(98.7 %id)
DA062565 cerebellum HSBP1L1.e-u 1 to 562 2 to 564 V49C I50D L51S S52F D53G ... tiling clone, capped   563/563
(100 %)
10 diff
(98.3 %id)
BI711585 insulinoma, Pancreas HSBP1L1.e-u 12 to 286 11 to 284   tiling clone, fully sequenced,   274/284
(96 %)
10 diff
(96.5 %id)
BG677172 skin, squamous cell carcinoma HSBP1L1.e-u 146 to 800 1 to 659   tiling clone,   659/869
(75 %)
33 diff
(96.3 %id)
BI711872 insulinoma, Pancreas HSBP1L1.e-u 256 to 602 347 to 1   tiling clone, fully sequenced,   347/347
(100 %)
5 diff
(98.6 %id)
BX397870 Placenta Cot 25-normalized HSBP1L1.e-u 682 to 1395 1 to 719   tiling clone,   719/719
(100 %)
13 diff
(98.2 %id)
BI063051 uterus_tumor HSBP1L1.e-u 734 to 1122 389 to 1   tiling clone,   389/389
(100 %)
13 diff
(96.7 %id)
BI063717 uterus_tumor HSBP1L1.e-u 766 to 1060 360 to 66   tiling clone,   295/360
(81 %)
0 diff
(100 %id)
BM046181 carcinoma, cell line, Prostate HSBP1L1.f 1 to 762 1 to 769 exact tiling clone,   769/807
(95 %)
33 diff
(96.0 %id)
BM738124 Ascites, stomach HSBP1L1.g 1 to 646 1 to 649 L25P Q26S E27G H28T F29L ...     649/649
(100 %)
17 diff
(97.4 %id)
BM767438 Ascites, stomach HSBP1L1.g 1 to 665 1 to 664 exact tiling clone,   664/664
(100 %)
2 diff
(99.7 %id)
BE906536 epithelioid carcinoma, Pancreas HSBP1L1.g 6 to 642 647 to 1 D16T A17R A18Q E19K N20I ...   Submitted on the opposite strand 647/751
(86 %)
28 diff
(96.3 %id)
BC040056 Lung, large cell carcinoma HSBP1L1.g 11 to 667 1 to 657 exact tiling clone, available from MGC, AAA   657/657
(100 %)
1 diff
(99.9 %id)
BQ232576 large cell carcinoma, lung HSBP1L1.g 11 to 667 12 to 668 exact available from MGC, AAA   657/668
(98 %)
11 diff
(98.4 %id)
CB240603 Human Lung Epithelial cells, lung HSBP1L1.g 12 to 669 673 to 17 exact AAA   657/671
(97 %)
2 diff
(99.8 %id)
BQ952095 epidermoid carcinoma, cell line, lung HSBP1L1.g 35 to 652 1 to 626 exact     626/1047
(59 %)
29 diff
(97.3 %id)
AV656952 corresponding non cancerous liver tissue Gene HSBP1L1, variant not shown         Submitted on the opposite strand, submitted on the opposite strand, submitted on the opposite strand    
AV656964 corresponding non cancerous liver tissue Gene HSBP1L1, variant not shown         Submitted on the opposite strand, submitted on the opposite strand, submitted on the opposite strand    
T86038 liver and spleen Gene HSBP1L1, variant not shown         This clone was ignored    
BE273512 Kidney, renal cell adenocarcinoma Gene HSBP1L1, variant not shown         Suspected internal deletion, this clone was ignored    
BI964786 Islets of Langerhans, Pancreas Gene HSBP1L1, variant not shown         Suspected internal deletion, this clone was ignored    
BM738591 stomach Gene HSBP1L1, variant not shown         Suspected internal deletion, this clone was ignored    
BM747726 stomach Gene HSBP1L1, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b-u, .c, .d, .e-u, .f, .g Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C