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Gene ANKRD20A5TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
31 supporting clones for gene ANKRD20A5 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BP201899 amygdala .a 1 to 583 1 to 583   tiling clone,   583/583
(100 %)
1 diff
(99.9 %id)
H55164   .a 231 to 344 1 to 114       114/114
(100 %)
3 diff
(97.4 %id)
DB555345 hypothalamus .a 511 to 962 1 to 451     Submitted on the opposite strand 451/454
(99 %)
15 diff
(96.7 %id)
AI218036 pooled .a 536 to 967 432 to 1   tiling clone,   432/432
(100 %)
1 diff
(99.8 %id)
DB508961 testis .a 556 to 964 1 to 409     Submitted on the opposite strand 409/409
(100 %)
1 diff
(99.8 %id)
DB512057 testis .a 557 to 964 1 to 408   tiling clone, Submitted on the opposite strand 408/408
(100 %)
0 diff
(100 %id)
BE073276 breast .a 560 to 879 335 to 16     Submitted on the opposite strand 320/335
(95 %)
1 diff
(99.8 %id)
DN996185 breast cancer, Mammary gland (cancer tissue) .b 1 to 602 8 to 609   tiling clone,   602/609
(98 %)
6 diff
(99.1 %id)
BG290526 bladder, transitional cell papilloma, cell line .b 357 to 1068 1 to 710   tiling clone,   710/860
(82 %)
16 diff
(98.2 %id)
BC033835 Adrenal cortex, carcinoma .b 802 to 2559 12 to 1775   tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (31/34 A in genome downstream of last aligned base) 1764/1764
(100 %)
5 diff
(99.8 %id)
BQ007619 Chondrosarcoma, Left Pelvis .b 1801 to 2559 777 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (31/34 A in genome downstream of last aligned base) 759/759
(100 %)
0 diff
(100 %id)
CA422696 cell lines, Chondrosarcoma .b 1885 to 2529 663 to 19   AAA Possibly primed on the genome, locally A rich (31/34 A in genome downstream of last aligned base) 645/645
(100 %)
0 diff
(100 %id)
BQ774800 Bone, Human Chondrosarcoma Cell Line .b 1896 to 2559 682 to 19   AAA Possibly primed on the genome, locally A rich (31/34 A in genome downstream of last aligned base) 664/664
(100 %)
0 diff
(100 %id)
BC022023 testis .c 1 to 2058 1 to 2056 G44A D45T A46L A47R E48R ... tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (31/34 A in genome downstream of last aligned base) 2056/2056
(100 %)
7 diff
(99.7 %id)
BG720199 testis .c 1 to 589 1 to 587       587/587
(100 %)
5 diff
(99.2 %id)
DB444058 testis .c 27 to 474 1 to 446       446/446
(100 %)
4 diff
(99.2 %id)
DB446908 testis .c 27 to 456 1 to 430       430/430
(100 %)
0 diff
(100 %id)
BC127726 PCR rescued clones, C list .c 223 to 854 1 to 632 exact tiling clone,   632/632
(100 %)
4 diff
(99.4 %id)
DB486361 hypothalamus .c 1797 to 2215 1 to 422   tiling clone,   422/422
(100 %)
10 diff
(97.7 %id)
AK092114   .d 1 to 2137 2 to 2145 Q115R tiling clone, available from FLJ,   2145/2145
(100 %)
7 diff
(99.7 %id)
AX747360   .d 1 to 2137 2 to 2145 Q115R     2145/2145
(100 %)
7 diff
(99.7 %id)
DA687432   .d 1 to 530 2 to 531 Q115R capped   530/530
(100 %)
1 diff
(99.9 %id)
DB322999   .d 1593 to 2137 548 to 1   tiling clone,   548/548
(100 %)
4 diff
(99.3 %id)
DB090611 testis .e 1 to 564 2 to 566 W47L tiling clone, capped   565/565
(100 %)
1 diff
(99.9 %id)
BX115861 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .e 435 to 835 407 to 7   tiling clone,   401/407
(98 %)
1 diff
(99.8 %id)
AI925984 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .e 558 to 829 272 to 1   tiling clone,   272/272
(100 %)
2 diff
(99.3 %id)
AA767895 germinal center B cell .e 577 to 1073 501 to 5   tiling clone,   497/538
(92 %)
4 diff
(99.3 %id)
AA768087 germinal center B cell .e 778 to 1073 300 to 5       296/300
(98 %)
0 diff
(100 %id)
AA368673 placenta .f-u 1 to 210 77 to 286   tiling clone,   210/286
(73 %)
6 diff
(98.0 %id)
BF793603 adrenal cortex carcinoma, cell line, adrenal gland .f-u 191 to 962 1 to 775   tiling clone, available from MGC,   775/960
(80 %)
23 diff
(97.7 %id)
BI056813 placenta_normal .g-u 1 to 503 9 to 510 C22V E24K I25S N26T L27C ... tiling clone,   502/522
(96 %)
5 diff
(99.1 %id)
DB506376.
matches multiple genes
hypothalamus Gene ANKRD20A5, variant not shown         Suspected internal deletion, this clone was ignored, also hits gene pleyshoy    
DB506376.
matches multiple genes
hypothalamus Gene pleyshoy, variant not shown         Suspected internal deletion, this clone was ignored, also hits gene pleyshoy    
DB577676.
matches multiple genes
hypothalamus Gene ANKRD20A5, variant not shown         Suspected internal deletion, this clone was ignored, also hits gene pleyshoy    
DB577676.
matches multiple genes
hypothalamus Gene pleyshoy, variant not shown         Suspected internal deletion, this clone was ignored, also hits gene pleyshoy    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f-u, .g-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C