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Gene FLJ39582TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
49 supporting clones for gene FLJ39582 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DB133950 thymus .a 1 to 547 2 to 549   tiling clone, to resequence, capped   548/548
(100 %)
1 diff
(99.9 %id)
DB344828 thymus .a 1245 to 1798 554 to 1   tiling clone, to resequence,   554/554
(100 %)
0 diff
(100 %id)
BC110368 Lymph, lymphoma .b 1 to 1263 14 to 1276 exact AAA   1263/1263
(100 %)
3 diff
(99.8 %id)
NR_027052.1   .b 1 to 1263 1 to 1263 exact RefSeq, tiling clone, AAA   1263/1263
(100 %)
0 diff
(100 %id)
BC065749 Bladder, carcinoma .b 295 to 1244 1 to 950 exact available from MGC, AAA   950/950
(100 %)
2 diff
(99.8 %id)
R10497 liver and spleen .b 624 to 942 37 to 363       327/401
(81 %)
5 diff
(98.8 %id)
BU858779 mixed (pool of 40 RNAs) .b 637 to 1254 1 to 618       618/621
(99 %)
2 diff
(99.7 %id)
AI684520 pooled .b 935 to 1269 336 to 2       335/336
(99 %)
0 diff
(100 %id)
C15650   .b 1019 to 1383 363 to 1   tiling clone, Submitted on the opposite strand 363/363
(100 %)
3 diff
(99.2 %id)
T90875 liver and spleen .b 1021 to 1240 218 to 1       218/218
(100 %)
2 diff
(99.1 %id)
AW589708 pooled germ cell tumors .b 1029 to 1269 241 to 1       241/241
(100 %)
0 diff
(100 %id)
AA704736 liver and spleen .b 1041 to 1168 126 to 1       126/126
(100 %)
3 diff
(97.7 %id)
AI085629 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 1041 to 1168 128 to 1       128/128
(100 %)
3 diff
(97.7 %id)
AI962529 pooled germ cell tumors .b 1047 to 1168 122 to 1       122/122
(100 %)
3 diff
(97.6 %id)
R10394 liver and spleen .b 1140 to 1234 93 to 1       93/98
(94 %)
2 diff
(98.0 %id)
CD580308 brain .c 1 to 681 14 to 706   tiling clone,   693/812
(85 %)
24 diff
(97.1 %id)
DR155656 human embryonic stem cells differentiated toan early endodermal cell type .c 21 to 764 1 to 744   tiling clone,   744/744
(100 %)
2 diff
(99.8 %id)
CR597525 B cells (Ramos cell line) Cot 25-normalized .c 44 to 1763 1 to 1720 exact tiling clone,   1720/1720
(100 %)
0 diff
(100 %id)
AL561462 B cells from Burkitt lymphoma .c 44 to 1039 1 to 995 T9X T22X V47X H49X Q90*     995/995
(100 %)
5 diff
(99.5 %id)
BM456199 lymph, lymphoma, cell line .c 80 to 903 49 to 874       826/897
(92 %)
9 diff
(99.0 %id)
BX350712   .c 442 to 1275 840 to 1 G5E A24G E32R V33W Q90*     840/954
(88 %)
31 diff
(96.8 %id)
BX328289   .c 785 to 1763 1 to 976       976/976
(100 %)
22 diff
(97.8 %id)
BX112303 lung .c 978 to 1446 1 to 470       470/470
(100 %)
7 diff
(98.6 %id)
AL582662 B cells from Burkitt lymphoma .c 989 to 1976 985 to 1       985/985
(100 %)
9 diff
(99.1 %id)
BX399765 Placenta Cot 25-normalized .c 1053 to 1960 925 to 21       905/925
(97 %)
3 diff
(99.7 %id)
AI204488 lung .c 1544 to 2012 469 to 1   tiling clone,   469/469
(100 %)
0 diff
(100 %id)
AW291941   .c 1675 to 2011 354 to 18   AAA   337/337
(100 %)
0 diff
(100 %id)
AI632901 carcinoid, lung .c 1724 to 2011 299 to 12   AAA   288/288
(100 %)
2 diff
(99.4 %id)
AI358539 lymph node, lymphoma, follicular mixed small and largecell .c 1819 to 2011 220 to 28   AAA   193/193
(100 %)
0 diff
(100 %id)
AW292029   .c 1834 to 2011 195 to 18   AAA   178/178
(100 %)
0 diff
(100 %id)
BI758122 brain .d-u 1 to 815 1 to 814 Q90* tiling clone,   814/817
(99 %)
6 diff
(99.3 %id)
TI_57216273   .d-u 1 to 815 29 to 842 Q90*     814/845
(96 %)
6 diff
(99.3 %id)
TI_149312879   .d-u 288 to 1067 846 to 83   AAA   764/922
(82 %)
25 diff
(97.3 %id)
H59323 liver and spleen .d-u 349 to 763 37 to 460       424/466
(90 %)
16 diff
(96.6 %id)
BC019907 Brain, anaplastic oligodendroglioma with1p/19q loss .d-u 416 to 932 517 to 1   tiling clone, available from MGC, AAA Submitted on the opposite strand 517/538
(96 %)
1 diff
(99.9 %id)
BG818723 anaplastic oligodendroglioma with 1p/19qloss, brain .d-u 416 to 933 531 to 12   available from MGC, AAA Submitted on the opposite strand 520/554
(93 %)
0 diff
(100 %id)
CF540977 lung, Primary Lung Cystic Fibrosis EpithelialCells .d-u 418 to 1067 664 to 19   AAA   646/646
(100 %)
8 diff
(98.8 %id)
BE675073 B-cell, chronic lymphotic leukemia .d-u 536 to 1071 543 to 8   tiling clone,   536/543
(98 %)
0 diff
(100 %id)
AA425384   .d-u 578 to 1067 511 to 22   AAA   490/490
(100 %)
3 diff
(99.4 %id)
AA972117 pooled .d-u 627 to 1069 450 to 8       443/450
(98 %)
0 diff
(100 %id)
H59275 liver and spleen .d-u 798 to 1065 272 to 2       271/272
(99 %)
0 diff
(100 %id)
NR_027051.1   .e 1 to 2615 1 to 2615 exact RefSeq, tiling clone, AAA   2615/2615
(100 %)
0 diff
(100 %id)
CR600536 Placenta Cot 25-normalized .e 287 to 2584 1 to 2298 exact     2298/2298
(100 %)
0 diff
(100 %id)
BX399766 Placenta Cot 25-normalized .e 287 to 1169 1 to 880 L86X     880/880
(100 %)
14 diff
(98.5 %id)
DA896789 skeletal muscle .e 297 to 845 2 to 550   capped   549/549
(100 %)
2 diff
(99.7 %id)
AK096901 skeletal muscle .e 299 to 2130 4 to 1835 exact available from FLJ,   1832/1833
(99 %)
1 diff
(100.0 %id)
DA875412 Prostate .e 300 to 886 2 to 589   capped   588/588
(100 %)
3 diff
(99.5 %id)
AW603485 colon_normal .e 642 to 869 242 to 15       228/242
(94 %)
0 diff
(100 %id)
AK097739 testis .e 733 to 2592 1 to 1860   available from FLJ,   1860/1860
(100 %)
5 diff
(99.8 %id)
DB049336 testis .e 734 to 1286 2 to 554   capped   553/553
(100 %)
2 diff
(99.7 %id)
BX389120 Placenta Cot 25-normalized .e 923 to 1813 895 to 1       895/896
(99 %)
20 diff
(97.8 %id)
DB331042 skeletal muscle .e 1592 to 2130 541 to 2       540/541
(99 %)
0 diff
(100 %id)
DB338453 testis .e 2043 to 2592 550 to 1       550/550
(100 %)
0 diff
(100 %id)
DB568102.
matches multiple genes
hypothalamus .f-u 1 to 474 475 to 1 L8F R9E C10R S11* tiling clone, also hits gene MGC16703 475/475
(100 %)
4 diff
(99.2 %id)
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d-u, .e, .f-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C