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Gene C17orf97TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
87 supporting clones for gene C17orf97 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BC057385 testis .a 1 to 2195 1 to 2225 L103P F244I T266P I276T P286I ... tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 2225/2227
(99 %)
21 diff
(99.1 %id)
BM560032 brain, medulla .a 17 to 1014 1 to 1019       1019/1053
(96 %)
61 diff
(94.3 %id)
DA520807 brain .a 119 to 685 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
CD250855 brain, Pituitary .a 120 to 773 29 to 694       666/888
(75 %)
26 diff
(97.1 %id)
CN261528 embryonic stem cells, DMSO-treated H9 cellline .a 137 to 588 1 to 452       452/452
(100 %)
0 diff
(100 %id)
BY798097 eye .a 220 to 824 1 to 604   tiling clone,   604/604
(100 %)
1 diff
(99.9 %id)
AL044400 testis .a 498 to 900 1 to 398   fully sequenced,   398/398
(100 %)
32 diff
(92.0 %id)
BP431844   .a 711 to 1123 1 to 413   tiling clone,   413/413
(100 %)
15 diff
(96.4 %id)
AL044401 testis .a 877 to 1322 443 to 1   tiling clone, fully sequenced,   443/443
(100 %)
2 diff
(99.6 %id)
AA382479 testis .a 1040 to 1316 1 to 278       278/278
(100 %)
5 diff
(98.3 %id)
AW956650   .a 1040 to 1387 1 to 349       349/353
(98 %)
4 diff
(98.9 %id)
AA843459   .a 1102 to 1462 362 to 2   tiling clone,   361/362
(99 %)
0 diff
(100 %id)
AW956656   .a 1130 to 1485 1 to 355   tiling clone,   355/375
(94 %)
37 diff
(90.2 %id)
BU148800 brain, neuroblastoma, cell line .b 1 to 834 5 to 847   tiling clone,   847/935
(90 %)
35 diff
(96.3 %id)
BI827867 brain, medulla .b 1 to 619 3 to 640       637/780
(81 %)
23 diff
(97.1 %id)
TI_57171912   .b 1 to 619 37 to 674       637/814
(78 %)
17 diff
(98.0 %id)
DA332821 hippocampus .b 1 to 589 2 to 592   capped   591/591
(100 %)
3 diff
(99.5 %id)
TI_57182313   .b 4 to 648 25 to 666       642/666
(96 %)
15 diff
(97.8 %id)
BG723607 testis .b 7 to 619 1 to 615   tiling clone, available from MGC,   615/619
(99 %)
11 diff
(98.3 %id)
BI771645 pooled lung and spleen .b 10 to 648 1 to 636       636/636
(100 %)
13 diff
(98.0 %id)
BI461399 testis .b 32 to 564 1 to 533   available from MGC,   533/533
(100 %)
4 diff
(99.3 %id)
BC070116 testis .b 37 to 1544 1 to 1508 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 1508/1508
(100 %)
1 diff
(100.0 %id)
BM563343 brain, medulla .b 45 to 905 1 to 878       878/1109
(79 %)
30 diff
(97.3 %id)
EL736913 mixed .b 114 to 972 1 to 499       499/499
(100 %)
0 diff
(100 %id)
AK128660 stomach, tumor tissue .b 283 to 1711 321 to 1839 D175E I200F F220I F230I T232P ... available from FLJ,   1839/1839
(100 %)
23 diff
(98.8 %id)
BC141806 Donated clones,Novartis FGA collection .b 283 to 1697 320 to 1734 E11K Q60L D175E I200F F220I ... tiling clone, AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 1734/1734
(100 %)
32 diff
(98.2 %id)
BX441914 brain, fetal brain .b 283 to 978 305 to 989       989/1039
(95 %)
15 diff
(98.6 %id)
BI520462 brain, medulla .b 283 to 593 312 to 626       623/626
(99 %)
22 diff
(96.5 %id)
BM806823 lymph, lymphoma, cell line .b 283 to 570 305 to 593       590/1183
(49 %)
11 diff
(99.1 %id)
TI_57215026   .b 283 to 597 351 to 672       637/672
(94 %)
16 diff
(97.7 %id)
TI_43963866   .b 283 to 593 345 to 659       629/659
(95 %)
13 diff
(98.1 %id)
NM_001013672.4   .b 283 to 1801 321 to 1839 exact RefSeq,   1839/1839
(100 %)
0 diff
(100 %id)
DB241920 stomach, tumor tissue .b 283 to 423 321 to 461   capped   460/460
(100 %)
2 diff
(99.6 %id)
BQ447835 Knee, Osteoarthritic Cartilage .b 733 to 1342 620 to 19   AAA   602/602
(100 %)
17 diff
(97.2 %id)
R46504 breast .b 855 to 1179 1 to 330       330/330
(100 %)
13 diff
(96.1 %id)
BX119789 breast .b 856 to 1569 1 to 713   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 713/713
(100 %)
1 diff
(99.9 %id)
TI_43963867   .b 892 to 1494 623 to 1       623/627
(99 %)
39 diff
(93.8 %id)
TI_149309520   .b 923 to 1799 963 to 99   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 865/947
(91 %)
21 diff
(97.8 %id)
BU073034.
matches multiple genes
insulinoma, Pancreas .b 930 to 1545 9 to 624     also hits gene LYSMD4 616/624
(98 %)
6 diff
(99.1 %id)
BQ448081 Knee, Osteoarthritic Cartilage .b 948 to 1580 649 to 19   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 631/634
(99 %)
4 diff
(99.4 %id)
TI_149315449   .b 952 to 1711 860 to 108   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 753/916
(82 %)
13 diff
(98.6 %id)
BE552331 pooled germ cell tumors .b 1049 to 1573 525 to 1       525/525
(100 %)
0 diff
(100 %id)
AW956653   .b 1051 to 1589 1 to 539       539/540
(99 %)
5 diff
(99.1 %id)
AW956655   .b 1051 to 1582 1 to 533       533/541
(98 %)
3 diff
(99.5 %id)
AI589189 Kidney .b 1055 to 1544 490 to 1       490/490
(100 %)
0 diff
(100 %id)
AI738578 colon, colon tumor, RER+ .b 1057 to 1573 531 to 14   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 518/518
(100 %)
3 diff
(99.5 %id)
BM685723 eye, Retina Foveal and Macular .b 1067 to 1690 7 to 630       624/630
(99 %)
2 diff
(99.7 %id)
BQ045333 lung, Primary Lung Cystic Fibrosis EpithelialCells .b 1072 to 1711 654 to 15   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 640/640
(100 %)
3 diff
(99.6 %id)
AA393166   .b 1078 to 1453 1 to 374   fully sequenced, Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 374/374
(100 %)
2 diff
(99.5 %id)
AA417339   .b 1078 to 1406 1 to 326   fully sequenced, Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 326/326
(100 %)
3 diff
(99.1 %id)
EL951249 eyeball .b 1085 to 1642 1 to 556       556/556
(100 %)
5 diff
(99.2 %id)
BU852273 testis .b 1095 to 1569 26 to 500   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 475/500
(95 %)
6 diff
(98.8 %id)
H42911 brain .b 1108 to 1458 1 to 355   fully sequenced,   355/355
(100 %)
7 diff
(98.1 %id)
H22610 brain .b 1109 to 1444 1 to 340   fully sequenced,   340/340
(100 %)
5 diff
(98.6 %id)
H46053 brain .b 1109 to 1377 1 to 278   fully sequenced,   278/278
(100 %)
2 diff
(99.3 %id)
BE467721 carcinoid, lung .b 1116 to 1575 460 to 1       460/460
(100 %)
0 diff
(100 %id)
BF061796 pooled germ cell tumors .b 1118 to 1574 457 to 1       457/457
(100 %)
0 diff
(100 %id)
AI028192   .b 1122 to 1569 454 to 7       448/454
(98 %)
0 diff
(100 %id)
BU687907 lung .b 1142 to 1799 675 to 19   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 657/657
(100 %)
2 diff
(99.7 %id)
CB305397 lung, Primary Lung Cystic Fibrosis EpithelialCells .b 1142 to 1711 584 to 15   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 570/570
(100 %)
1 diff
(99.9 %id)
BX409991 brain, fetal brain .b 1158 to 1681 97 to 622       526/642
(81 %)
6 diff
(99.1 %id)
AA992294   .b 1216 to 1574 361 to 3       359/361
(99 %)
0 diff
(100 %id)
AI028195   .b 1216 to 1570 360 to 6       355/360
(98 %)
0 diff
(100 %id)
BG236810 brain, glioblastoma with probably TP53 mutation andwithout EGFR amplification .b 1246 to 1544 298 to 1       298/298
(100 %)
1 diff
(99.7 %id)
BE466454 Kidney .b 1264 to 1573 310 to 1       310/310
(100 %)
0 diff
(100 %id)
R46505 breast .b 1266 to 1568 309 to 1       309/309
(100 %)
9 diff
(97.1 %id)
AW615228 Kidney .b 1293 to 1712 420 to 1       420/420
(100 %)
5 diff
(98.9 %id)
H45988 brain .b 1347 to 1681 341 to 1   fully sequenced,   341/341
(100 %)
4 diff
(98.9 %id)
AA417326   .b 1376 to 1711 359 to 24   fully sequenced, AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 336/336
(100 %)
0 diff
(100 %id)
H20793 brain .b 1414 to 1697 286 to 1   fully sequenced,   286/286
(100 %)
1 diff
(99.7 %id)
AA398562   .b 1423 to 1711 312 to 24   fully sequenced, AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 289/289
(100 %)
0 diff
(100 %id)
H42912 brain .b 1428 to 1697 276 to 3   fully sequenced,   274/276
(99 %)
2 diff
(99.3 %id)
BG056786 anaplastic oligodendroglioma, brain .b 1445 to 1801 359 to 3       357/361
(98 %)
0 diff
(100 %id)
TI_1948230621   .c 1 to 886 1002 to 121 T3P G5A A6L S7P E8S ... tiling clone,   882/1412
(62 %)
18 diff
(98.8 %id)
AA405991.
matches multiple genes
  .c 860 to 1358 1 to 499   tiling clone, also hits gene CHGA 499/499
(100 %)
0 diff
(100 %id)
AA405740.
matches multiple genes
  .c 882 to 1366 504 to 21   tiling clone, AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base), also hits gene ZMIZ2 484/484
(100 %)
1 diff
(99.8 %id)
TI_1948230390   .d 1 to 458 134 to 592   tiling clone, fully sequenced,   459/592
(77 %)
6 diff
(99.0 %id)
TI_1948230559   .d 1 to 135 123 to 257       135/162
(83 %)
8 diff
(95.1 %id)
TI_1948230560   .d 395 to 783 509 to 121   tiling clone,   389/409
(95 %)
0 diff
(100 %id)
TI_1948230391   .d 428 to 783 476 to 121   tiling clone, fully sequenced,   356/376
(94 %)
0 diff
(100 %id)
TI_1948230282   .e 1 to 217 132 to 348   fully sequenced,   217/244
(88 %)
6 diff
(97.6 %id)
TI_1948230452   .e 1 to 250 132 to 381   tiling clone, fully sequenced,   250/278
(89 %)
6 diff
(97.9 %id)
TI_1948230283   .e 201 to 693 612 to 120   tiling clone, fully sequenced,   493/513
(96 %)
0 diff
(100 %id)
TI_1948230453   .e 220 to 693 594 to 121   fully sequenced,   474/494
(95 %)
0 diff
(100 %id)
BG772141 testis .f -8 to 874 1 to 883 exact tiling clone,   883/883
(100 %)
20 diff
(97.8 %id)
BI830721 brain, medulla .f 64 to 786 1 to 732       732/732
(100 %)
22 diff
(97.0 %id)
TI_57172898   .f 64 to 786 65 to 796       732/796
(91 %)
24 diff
(97.0 %id)
CR747637 testis .f 477 to 893 444 to 28   tiling clone, AAA Submitted on the opposite strand 417/417
(100 %)
0 diff
(100 %id)
AI970164 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .g 5 to 239 235 to 1   tiling clone,   235/235
(100 %)
2 diff
(99.2 %id)
AI631634 pooled germ cell tumors .g 6 to 231 234 to 9       226/234
(96 %)
0 diff
(100 %id)
AW515801 pooled germ cell tumors .g 6 to 239 234 to 1       234/234
(100 %)
1 diff
(99.6 %id)
DB727706.
matches multiple genes
testis .g 29 to 708 1 to 676   tiling clone, also hits gene kersmaw 676/678
(99 %)
18 diff
(97.4 %id)
BM725863 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .g 283 to 392 311 to 418   fully sequenced,   418/418
(100 %)
0 diff
(100 %id)
BM677979 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .g 362 to 609 269 to 22   tiling clone, fully sequenced,   248/269
(92 %)
1 diff
(99.7 %id)
N39379 melanocyte .h-u 1 to 345 1 to 350 S48X P50X L51X C62W K63Q ... tiling clone,   350/362
(96 %)
8 diff
(97.8 %id)
AA583536   .i-u 1 to 222 183 to 404 I2T tiling clone,   222/404
(54 %)
6 diff
(98.6 %id)
TI_1948230215   Gene C17orf97, variant not shown       fully sequenced, This clone was ignored    
TI_1948230216   Gene C17orf97, variant not shown       fully sequenced, This clone was ignored    
TI_1948230720   Gene C17orf97, variant not shown       fully sequenced, Suspected internal deletion, this clone was ignored    
TI_1948230721   Gene C17orf97, variant not shown       fully sequenced, Suspected internal deletion, this clone was ignored    
TI_1948230784   Gene C17orf97, variant not shown         This clone was ignored    
TI_1948230785   Gene C17orf97, variant not shown         This clone was ignored    
TI_149313493   Gene C17orf97, variant not shown       AAA Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h-u, .i-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C