To see this page, please, enable javaScript and styleSheets on your browser: Tools -> Internet Options ...
Reload !
Gene C9orf172TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
34 supporting clones for gene C9orf172 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BM544514 brain, hippocampus C9orf172.a 1 to 560 1 to 566   tiling clone,   566/1221
(46 %)
24 diff
(98.1 %id)
BM543459 brain, hippocampus C9orf172.a 2 to 479 7 to 490   tiling clone,   484/1322
(36 %)
27 diff
(98.0 %id)
NM_001080482.2   C9orf172.a 228 to 3158 1 to 2931 exact RefSeq,   2931/2931
(100 %)
0 diff
(100 %id)
BX441014 brain, fetal brain C9orf172.b 1 to 946 1 to 944   tiling clone,   944/944
(100 %)
18 diff
(98.1 %id)
BX409731 brain, fetal brain C9orf172.b 772 to 1687 1 to 923   tiling clone,   923/923
(100 %)
16 diff
(98.3 %id)
BX409730 brain, fetal brain C9orf172.b 773 to 1600 1 to 832   tiling clone,   832/884
(94 %)
19 diff
(97.9 %id)
BF513461   C9orf172.b 1706 to 2231 1 to 526   tiling clone, Submitted on the opposite strand 526/526
(100 %)
2 diff
(99.7 %id)
BE018940 Kidney, renal cell adenocarcinoma C9orf172.b 1779 to 2193 1 to 415       415/415
(100 %)
6 diff
(98.6 %id)
CR749019 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus C9orf172.b 1897 to 2114 1 to 218       218/221
(98 %)
2 diff
(99.1 %id)
AI382761 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus C9orf172.b 2319 to 2478 160 to 1   tiling clone,   160/160
(100 %)
0 diff
(100 %id)
AI421092 brain, glioblastoma (pooled) C9orf172.b 2885 to 3293 1 to 409   tiling clone, Submitted on the opposite strand 409/409
(100 %)
0 diff
(100 %id)
BQ278870 adenocarcinoma, cell line, breast C9orf172.b 3021 to 3517 1 to 497   tiling clone,   497/1290
(38 %)
1 diff
(100.0 %id)
BE336860 Kidney, renal cell adenocarcinoma C9orf172.c-u 1 to 419 1 to 419   tiling clone,   419/419
(100 %)
1 diff
(99.8 %id)
DA928345 small intestine C9orf172.c-u 1025 to 1472 2 to 449   tiling clone, capped   448/448
(100 %)
0 diff
(100 %id)
CN364831 embryonic stem cells, cell lines H1, H7, andH9 C9orf172.c-u 1125 to 1473 1 to 349       349/349
(100 %)
1 diff
(99.8 %id)
CK299177 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid C9orf172.c-u 1139 to 1790 669 to 19   AAA   651/664
(98 %)
5 diff
(99.3 %id)
TI_151809300   C9orf172.c-u 1142 to 1790 79 to 728   AAA   650/650
(100 %)
5 diff
(99.3 %id)
BM717103 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid C9orf172.c-u 1145 to 1794 1 to 649       649/649
(100 %)
2 diff
(99.7 %id)
TI_151777624   C9orf172.c-u 1145 to 1786 91 to 738       648/1435
(45 %)
35 diff
(97.6 %id)
CA397335 eye, RPE/choroid C9orf172.c-u 1148 to 1569 1 to 422       422/422
(100 %)
0 diff
(100 %id)
BE502037 pooled germ cell tumors C9orf172.c-u 1242 to 1795 554 to 1       554/554
(100 %)
0 diff
(100 %id)
BM709330 eye, optic nerve C9orf172.c-u 1258 to 1475 1 to 218       218/218
(100 %)
0 diff
(100 %id)
TI_151733091   C9orf172.c-u 1264 to 1795 611 to 80   AAA   532/938
(56 %)
4 diff
(99.6 %id)
BQ188746 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid C9orf172.c-u 1272 to 1795 1 to 524   AAA   524/524
(100 %)
0 diff
(100 %id)
AI884888 anaplastic oligodendroglioma, brain C9orf172.c-u 1313 to 1795 483 to 1       483/483
(100 %)
0 diff
(100 %id)
TI_154168443   C9orf172.c-u 1373 to 1796 541 to 117     Submitted on the opposite strand 425/540
(78 %)
0 diff
(100 %id)
AI497669 anaplastic oligodendroglioma, brain C9orf172.c-u 1375 to 1796 428 to 7   tiling clone,   422/428
(98 %)
0 diff
(100 %id)
CF528958 placenta C9orf172.c-u 1401 to 1795 413 to 19   AAA   395/395
(100 %)
2 diff
(99.5 %id)
BQ028336 mixed C9orf172.c-u 1438 to 1795 375 to 19   AAA   357/357
(100 %)
2 diff
(99.5 %id)
AI560371 anaplastic oligodendroglioma, brain C9orf172.c-u 1471 to 1795 327 to 1       327/327
(100 %)
5 diff
(98.5 %id)
BE208068 Kidney, renal cell adenocarcinoma C9orf172.c-u 1489 to 1796 313 to 6       308/313
(98 %)
0 diff
(100 %id)
CF529897 placenta C9orf172.c-u 1519 to 1795 295 to 19   AAA   277/277
(100 %)
2 diff
(99.3 %id)
CN364832 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 C9orf172.c-u 1530 to 1791 1 to 262       262/262
(100 %)
0 diff
(100 %id)
CF138492 lymph C9orf172.c-u 1552 to 1796 289 to 45     Submitted on the opposite strand 245/289
(84 %)
0 diff
(100 %id)
AI870062 colon, colonic mucosa from 3 patients with Crohn'sdisease C9orf172.c-u 1713 to 1796 86 to 3       84/86
(97 %)
0 diff
(100 %id)
? Gene Summary Gene on genome mRNA:.a, .b, .c-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C