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Gene C2orf80TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
30 supporting clones for gene C2orf80 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DB473152 hippocampus .a 1 to 469 1 to 469   tiling clone,   469/469
(100 %)
0 diff
(100 %id)
BI554282 anaplastic oligodendroglioma with 1p/19qloss, brain .a 374 to 1144 1 to 784   tiling clone, AAA   784/814
(96 %)
39 diff
(95.3 %id)
TI_44384986   .a 374 to 1144 52 to 835       784/892
(87 %)
39 diff
(95.7 %id)
BG211448   .a 513 to 766 7 to 260   tiling clone,   254/260
(97 %)
8 diff
(97.0 %id)
AA120960   .b 1 to 291 1 to 293   tiling clone,   293/293
(100 %)
8 diff
(97.3 %id)
AA211233   .b 18 to 366 1 to 348       348/350
(99 %)
3 diff
(99.2 %id)
BM805695 brain, hippocampus .b 36 to 786 1 to 759   tiling clone,   759/992
(76 %)
11 diff
(98.9 %id)
BC035737 Brain, hippocampus .b 41 to 1243 1 to 1204 C130R tiling clone, available from MGC, AAA   1204/1204
(100 %)
2 diff
(99.9 %id)
NM_001099334.2   .b 41 to 1243 1 to 1203 C130R RefSeq, AAA   1203/1203
(100 %)
1 diff
(100.0 %id)
DB473621 hippocampus .b 54 to 495 1 to 442       442/442
(100 %)
1 diff
(99.8 %id)
DN992626 brain, whole brain .b 72 to 637 8 to 573       566/573
(98 %)
7 diff
(98.8 %id)
DB466927 hippocampus .b 164 to 581 1 to 418       418/418
(100 %)
0 diff
(100 %id)
N55138 multiple sclerosis lesions .b 170 to 503 1 to 335       335/335
(100 %)
4 diff
(98.9 %id)
DN992988 brain, whole brain .b 177 to 677 32 to 533       502/533
(94 %)
8 diff
(98.5 %id)
TI_57198801   .b 207 to 1163 28 to 981 I18M G19A I20S R21D L22F ...     954/981
(97 %)
34 diff
(96.6 %id)
BI822703 pooled brain, lung, testis .b 215 to 1163 1 to 946       946/946
(100 %)
28 diff
(97.1 %id)
TI_57216697   .b 500 to 1186 70 to 758       694/1117
(62 %)
13 diff
(98.9 %id)
BI756746 brain .b 502 to 1186 1 to 688   tiling clone,   688/713
(96 %)
7 diff
(99.1 %id)
BG192322   .b 579 to 1185 12 to 620   AAA   608/709
(85 %)
10 diff
(98.6 %id)
DB542395 hippocampus .b 729 to 1191 1 to 464     Submitted on the opposite strand 464/464
(100 %)
1 diff
(99.8 %id)
DB541912 hippocampus .b 771 to 1249 1 to 479     Submitted on the opposite strand 479/481
(99 %)
2 diff
(99.6 %id)
DB533831 hippocampus .b 783 to 1188 9 to 419     Submitted on the opposite strand 411/419
(98 %)
6 diff
(98.6 %id)
AI655684 pooled germ cell tumors .b 785 to 1252 469 to 1       469/477
(98 %)
1 diff
(99.8 %id)
AW136505   .b 794 to 1252 477 to 18   AAA   460/460
(100 %)
1 diff
(99.8 %id)
DR978204 brain .b 967 to 1185 1 to 217   AAA Submitted on the opposite strand 217/217
(100 %)
4 diff
(98.2 %id)
AA122157   .b 1148 to 1252 118 to 14   AAA   105/106
(99 %)
6 diff
(94.4 %id)
R22701 whole brain .c 1 to 386 1 to 393   tiling clone,   393/394
(99 %)
13 diff
(96.8 %id)
AL535414 brain, fetal brain .c 333 to 1110 1 to 778   tiling clone, fully sequenced,   778/778
(100 %)
2 diff
(99.8 %id)
AL535413 brain, fetal brain .c 523 to 1081 559 to 1   fully sequenced,   559/559
(100 %)
22 diff
(96.1 %id)
BM806058 brain, hippocampus .d 1 to 661 11 to 672 E2V R3N R4K L5A I6H ... tiling clone,   662/1153
(57 %)
10 diff
(99.2 %id)
DA522934 brain .e-u 1 to 575 2 to 576 exact tiling clone, capped   575/575
(100 %)
1 diff
(99.9 %id)
AW138581   Gene C2orf80, variant not shown       AAA This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C