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Gene TRNP1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
88 supporting clones for gene TRNP1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DB494240 hypothalamus .a-u 1 to 501 1 to 501   tiling clone,   501/501
(100 %)
13 diff
(97.5 %id)
CK904126 Islets of Langerhans, Pancreas .a-u 13 to 566 1 to 554   tiling clone,   554/554
(100 %)
1 diff
(99.9 %id)
BM021923 Islets of Langerhans, Pancreas .a-u 29 to 466 1 to 438       438/438
(100 %)
2 diff
(99.6 %id)
CK904125 Islets of Langerhans, Pancreas .a-u 41 to 584 544 to 1       544/549
(99 %)
22 diff
(96.0 %id)
BY796832 eye .a-u 50 to 618 1 to 569       569/569
(100 %)
1 diff
(99.9 %id)
AI631660 pooled germ cell tumors .a-u 94 to 601 509 to 1       509/509
(100 %)
2 diff
(99.7 %id)
AI435085 pooled .a-u 122 to 601 480 to 1       480/480
(100 %)
1 diff
(99.8 %id)
AI970519 pooled germ cell tumors .a-u 136 to 578 443 to 1       443/443
(100 %)
1 diff
(99.8 %id)
BQ935457 carcinoma, cell line, Prostate .a-u 152 to 812 24 to 691   tiling clone,   668/997
(67 %)
22 diff
(97.8 %id)
BI966110 Islets of Langerhans, Pancreas .a-u 169 to 617 450 to 1       450/450
(100 %)
4 diff
(99.2 %id)
AI745252 pooled .a-u 175 to 601 428 to 1       428/436
(98 %)
2 diff
(99.6 %id)
AW300297 Kidney .a-u 175 to 608 435 to 1       435/442
(98 %)
6 diff
(98.7 %id)
AW052060 Kidney .a-u 205 to 601 397 to 1       397/398
(99 %)
1 diff
(99.8 %id)
AW051390 pooled .a-u 207 to 601 395 to 1       395/395
(100 %)
0 diff
(100 %id)
BQ900339 carcinoma, cell line, Prostate .a-u 211 to 687 1 to 478       478/1092
(43 %)
6 diff
(99.5 %id)
AI093549 uterus .a-u 219 to 601 383 to 1       383/383
(100 %)
0 diff
(100 %id)
BM310758 Pancreas, Purified pancreatic islet .a-u 225 to 548 1 to 324       324/324
(100 %)
0 diff
(100 %id)
BE465996 pooled germ cell tumors .a-u 234 to 601 368 to 1       368/368
(100 %)
2 diff
(99.5 %id)
AI768656 Kidney .a-u 244 to 578 337 to 3       335/337
(99 %)
0 diff
(100 %id)
AI915115 colon, colon tumor, RER+ .a-u 251 to 601 351 to 1       351/351
(100 %)
1 diff
(99.8 %id)
BM310453 Pancreas, Purified pancreatic islet .a-u 280 to 626 347 to 1       347/347
(100 %)
0 diff
(100 %id)
BE671797 pooled germ cell tumors .a-u 316 to 601 286 to 1       286/286
(100 %)
0 diff
(100 %id)
BG036482 adenocarcinoma, cell line, Prostate .a-u 483 to 616 1 to 134       134/134
(100 %)
0 diff
(100 %id)
BF513437   .a-u 620 to 976 1 to 361   tiling clone, Submitted on the opposite strand 361/361
(100 %)
10 diff
(97.3 %id)
BF732278 fibrotheoma, ovary .a-u 657 to 906 1 to 250   tiling clone, Submitted on the opposite strand 250/250
(100 %)
1 diff
(99.6 %id)
NM_001013642.2   .b 1 to 1949 1 to 1949 W27R RefSeq,   1949/1949
(100 %)
1 diff
(100.0 %id)
BC069216 Eye, normal, pigmented retinal epithelium .b 4 to 1716 1 to 1713 W27R tiling clone, available from MGC, AAA   1713/1713
(100 %)
2 diff
(99.9 %id)
BQ646324 hepatocellular carcinoma, cell line, Liver .b 453 to 1094 1 to 645       645/980
(65 %)
22 diff
(97.8 %id)
BE671357 carcinoid, lung .b 606 to 1028 1 to 423     Submitted on the opposite strand 423/423
(100 %)
1 diff
(99.8 %id)
AI366714 anaplastic oligodendroglioma, brain .b 607 to 1109 1 to 503   tiling clone, Submitted on the opposite strand 503/503
(100 %)
0 diff
(100 %id)
AI817060 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .b 607 to 1149 1 to 544     Submitted on the opposite strand 544/544
(100 %)
4 diff
(99.3 %id)
BF940048 brain, glioblastoma (pooled) .b 607 to 1121 1 to 515     Submitted on the opposite strand 515/515
(100 %)
1 diff
(99.9 %id)
TI_151734676   .b 607 to 1272 60 to 726     Submitted on the opposite strand 667/1081
(61 %)
14 diff
(98.8 %id)
BF448697 fibrotheoma, ovary .b 616 to 1121 1 to 506     Submitted on the opposite strand 506/506
(100 %)
1 diff
(99.9 %id)
AI814984 adenocarcinoma, Pancreas .b 631 to 1060 1 to 430     Submitted on the opposite strand 430/430
(100 %)
1 diff
(99.8 %id)
BM820130 stomach .b 699 to 1217 1 to 519       519/519
(100 %)
0 diff
(100 %id)
BM820196 stomach .b 699 to 1123 1 to 426       426/426
(100 %)
1 diff
(99.8 %id)
BG249805 hypernephroma, cell line, Kidney .b 827 to 1518 1 to 681       681/684
(99 %)
36 diff
(94.8 %id)
TI_151733501   .b 835 to 1273 519 to 77   AAA   443/983
(45 %)
3 diff
(99.7 %id)
BQ189050 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 837 to 1273 1 to 437   AAA   437/437
(100 %)
0 diff
(100 %id)
D78792 placenta .b 841 to 1028 35 to 220       186/220
(84 %)
8 diff
(96.4 %id)
C16942   .b 851 to 1327 1 to 469       469/469
(100 %)
14 diff
(97.1 %id)
BG186523   .b 906 to 1666 1 to 764       764/768
(99 %)
55 diff
(92.9 %id)
BG188063   .b 906 to 1688 1 to 783       783/789
(99 %)
6 diff
(99.3 %id)
BP394703 pancreatic islet .b 917 to 1193 1 to 277     Submitted on the opposite strand 277/282
(98 %)
1 diff
(99.7 %id)
EL954909 eyeball .b 927 to 1402 1 to 476       476/476
(100 %)
8 diff
(98.4 %id)
CA438061 lung, Metastatic Chondrosarcoma .b 934 to 1328 414 to 19   AAA   396/397
(99 %)
6 diff
(98.5 %id)
BG716002 brain, hypothalamus .b 972 to 1604 1 to 653       653/653
(100 %)
19 diff
(97.1 %id)
AW387064 stomach .b 977 to 1441 481 to 15       467/481
(97 %)
0 diff
(100 %id)
BE696289 colon .b 1027 to 1448 12 to 434       423/434
(97 %)
6 diff
(98.7 %id)
CB119700 Liver .b 1030 to 1513 1 to 484       484/484
(100 %)
2 diff
(99.6 %id)
DT220326 brain .b 1048 to 1664 1 to 616       616/616
(100 %)
3 diff
(99.6 %id)
AA039275 uterus .b 1147 to 1355 1 to 213   fully sequenced,   213/213
(100 %)
4 diff
(98.2 %id)
BX100023 uterus .b 1149 to 1711 1 to 564   AAA   564/564
(100 %)
1 diff
(99.9 %id)
BM718216 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 1151 to 1716 1 to 566   AAA   566/566
(100 %)
0 diff
(100 %id)
AI869016 Prostate .b 1162 to 1555 397 to 1       397/397
(100 %)
4 diff
(99.0 %id)
BU076631 Pancreas, Purified pancreatic islet .b 1185 to 1716 562 to 31   AAA Submitted on the opposite strand 532/532
(100 %)
1 diff
(99.9 %id)
AI742936 pooled .b 1206 to 1711 520 to 15   AAA   506/506
(100 %)
1 diff
(99.9 %id)
BG752663 eye, normal pigmented retinal epithelium .b 1220 to 1961 1 to 744   tiling clone,   744/748
(99 %)
8 diff
(99.0 %id)
W90681 liver and spleen .b 1224 to 1542 319 to 1       319/319
(100 %)
2 diff
(99.4 %id)
H83797 eye, retina .b 1229 to 1616 1 to 396       396/409
(96 %)
29 diff
(93.0 %id)
TI_158434169   .b 1231 to 1716 552 to 66   AAA   487/570
(85 %)
3 diff
(99.5 %id)
AI370989 lung .b 1237 to 1719 487 to 5       483/487
(99 %)
0 diff
(100 %id)
TI_157606512   .b 1241 to 1716 579 to 104   AAA   476/478
(99 %)
0 diff
(100 %id)
AI279587 carcinoid, lung .b 1243 to 1719 479 to 3       477/479
(99 %)
0 diff
(100 %id)
DB565282 hypothalamus .b 1265 to 1715 1 to 451     Submitted on the opposite strand 451/451
(100 %)
1 diff
(99.8 %id)
BF907724 uterus_tumor .b 1276 to 1582 1 to 307       307/307
(100 %)
1 diff
(99.7 %id)
BF109689 pooled .b 1278 to 1719 450 to 6       445/450
(98 %)
0 diff
(100 %id)
AI089988 uterus .b 1300 to 1711 427 to 15   AAA   413/413
(100 %)
2 diff
(99.6 %id)
AA037766 uterus .b 1325 to 1713 392 to 1   fully sequenced,   392/392
(100 %)
3 diff
(99.3 %id)
AW864215 stomach_normal .b 1333 to 1737 15 to 417       403/418
(96 %)
14 diff
(96.7 %id)
AI127574 uterus .b 1363 to 1716 386 to 33   AAA   354/354
(100 %)
6 diff
(98.4 %id)
AI942335 Kidney .b 1400 to 1555 156 to 1       156/156
(100 %)
1 diff
(99.4 %id)
TI_158432530   .b 1405 to 1716 414 to 103   AAA   312/413
(75 %)
5 diff
(98.8 %id)
AA532548 normal prostate, Prostate .b 1434 to 1716 283 to 1       283/283
(100 %)
0 diff
(100 %id)
AA379291 skin .b 1458 to 1637 8 to 187       180/187
(96 %)
6 diff
(96.8 %id)
AA379296 skin .b 1458 to 1716 1 to 259       259/259
(100 %)
0 diff
(100 %id)
AI377954 pooled .b 1489 to 1947 459 to 1       459/459
(100 %)
0 diff
(100 %id)
AI066629 senescent fibroblast .b 1508 to 1948 454 to 14   tiling clone, AAA   441/441
(100 %)
0 diff
(100 %id)
BE219163 carcinoid, lung .b 1561 to 1948 388 to 1       388/388
(100 %)
0 diff
(100 %id)
FN063615 breast carcinoma .b 1638 to 1687 1 to 54       54/54
(100 %)
2 diff
(96.3 %id)
AW151636 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .b 1755 to 1949 195 to 1       195/195
(100 %)
0 diff
(100 %id)
AI942439 anaplastic oligodendroglioma, brain .c 1 to 422 1 to 422 G84R tiling clone, Submitted on the opposite strand 422/422
(100 %)
3 diff
(99.3 %id)
AW663347 2 pooled high-grade transitional celltumors, genitourinary tract .c 173 to 575 1 to 403   tiling clone,   403/403
(100 %)
0 diff
(100 %id)
DA568440 whole embryo, mainly head .c 533 to 1070 2 to 540   tiling clone, capped   539/543
(99 %)
5 diff
(99.1 %id)
DB354952 whole embryo, mainly head .c 1586 to 2169 585 to 1   tiling clone,   585/587
(99 %)
9 diff
(98.5 %id)
R00111 liver and spleen .d-u 1 to 369 381 to 12 G2E D3X M9X R14Q W15V ... tiling clone,   370/383
(96 %)
0 diff
(100 %id)
DB495379.
matches multiple genes
hypothalamus Gene TRNP1, variant not shown         This clone was ignored, also hits gene flaworbo    
DB495379.
matches multiple genes
hypothalamus Gene flaworbo, variant not shown         This clone was ignored, also hits gene flaworbo    
DB566433.
matches multiple genes
hypothalamus Gene TRNP1, variant not shown         This clone was ignored, also hits gene flaworbo    
DB566433.
matches multiple genes
hypothalamus Gene flaworbo, variant not shown         This clone was ignored, also hits gene flaworbo    
AI091361 pooled Gene TRNP1, variant not shown         Suspected internal deletion, this clone was ignored    
AI989859 pooled germ cell tumors Gene TRNP1, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a-u, .b, .c, .d-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C