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Gene CCDC103TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
132 supporting clones for gene CCDC103 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA185416 amygdala .a 1 to 554 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA309076 hippocampus .a 1 to 580 2 to 581   tiling clone, capped   580/580
(100 %)
0 diff
(100 %id)
DA517285 brain .a 5 to 563 2 to 560   capped   559/560
(99 %)
5 diff
(99.2 %id)
DA400067 thalamus .a 12 to 583 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
DA491337 brain .a 12 to 580 2 to 570   capped   569/569
(100 %)
3 diff
(99.5 %id)
DB240384 trachea .a 16 to 596 2 to 583   capped   582/582
(100 %)
1 diff
(99.9 %id)
DA402556 thalamus .a 18 to 612 2 to 596   capped   595/595
(100 %)
2 diff
(99.7 %id)
DB052704 testis .a 18 to 580 2 to 565   capped   564/564
(100 %)
1 diff
(99.9 %id)
DB081869 testis .a 18 to 479 2 to 463   capped   462/462
(100 %)
0 diff
(100 %id)
DB223792 trachea .a 19 to 580 2 to 563   capped   562/562
(100 %)
1 diff
(99.9 %id)
BM454938 leiomyosarcoma, uterus .a 29 to 886 1 to 866 E214G E215G Q216A L218S E219W ...     866/1164
(74 %)
20 diff
(98.3 %id)
TI_57172195   .a 29 to 760 33 to 766       734/766
(95 %)
14 diff
(98.2 %id)
BI831532 brain, medulla .a 34 to 760 1 to 729       729/729
(100 %)
12 diff
(98.4 %id)
BI829301 brain, medulla .a 35 to 737 1 to 702       702/703
(99 %)
3 diff
(99.6 %id)
TI_57176038   .a 35 to 737 57 to 758       702/759
(92 %)
7 diff
(99.1 %id)
DA191271 amygdala .a 53 to 637 2 to 586   capped   585/585
(100 %)
0 diff
(100 %id)
TI_159711123   .a 53 to 1006 997 to 61 N4* tiling clone, AAA   939/977
(96 %)
22 diff
(97.8 %id)
BI829596 brain, medulla .a 76 to 880 1 to 805 G217V E219G E220G Q221A S222V ...     805/807
(99 %)
5 diff
(99.4 %id)
TI_57175950   .a 76 to 880 73 to 877 G217V E219G E220G Q221A S222V ...     805/879
(91 %)
10 diff
(98.9 %id)
BQ435149 melanotic melanoma, skin .a 82 to 905 1 to 837 S190I E214G E215G Q216A L218S ...     837/884
(94 %)
22 diff
(97.6 %id)
BG024578 lymph, lymphoma, cell line .a 87 to 695 1 to 617       617/617
(100 %)
10 diff
(98.4 %id)
BI826937 brain, medulla .a 87 to 882 1 to 796 exact     796/796
(100 %)
1 diff
(99.9 %id)
TI_57173234   .a 87 to 882 31 to 826 exact     796/826
(96 %)
6 diff
(99.3 %id)
DA279311 corpus callosum .b 1 to 477 2 to 478   tiling clone, capped   477/477
(100 %)
0 diff
(100 %id)
DA294647 hippocampus .b 2 to 562 2 to 563   capped   562/562
(100 %)
2 diff
(99.7 %id)
DA705474   .b 2 to 485 2 to 485   capped   484/484
(100 %)
0 diff
(100 %id)
DB222242 trachea .b 2 to 579 2 to 580   capped   579/579
(100 %)
2 diff
(99.7 %id)
DB222959 trachea .b 6 to 568 2 to 565   capped   564/564
(100 %)
2 diff
(99.7 %id)
DA247740 brain .b 7 to 277 2 to 272   capped   271/273
(99 %)
6 diff
(97.9 %id)
DB240441 trachea .b 13 to 604 2 to 593   capped   592/592
(100 %)
0 diff
(100 %id)
DB216272 trachea .b 17 to 540 2 to 525   capped   524/524
(100 %)
0 diff
(100 %id)
DA357347 subthalamic nucleus .b 19 to 561 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
DA802413 brain .b 19 to 567 2 to 550   capped   549/549
(100 %)
1 diff
(99.9 %id)
DB234614 trachea .b 19 to 609 2 to 592   capped   591/591
(100 %)
0 diff
(100 %id)
DB276917 uterus .b 19 to 560 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
DA515300 brain .b 23 to 564 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
DB091422 testis .b 25 to 596 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
BX505545   .b 27 to 552 1 to 526       526/526
(100 %)
1 diff
(99.9 %id)
DA190085 amygdala .b 29 to 609 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
DA742960   .b 32 to 579 2 to 550   capped   549/549
(100 %)
1 diff
(99.9 %id)
DB292842   .b 58 to 786 2 to 720   capped   719/818
(87 %)
13 diff
(98.5 %id)
CX784683 human embryonic stem cells .b 60 to 797 1 to 738       738/738
(100 %)
1 diff
(99.9 %id)
DB028318 testis .b 60 to 611 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DB037945 testis .b 60 to 614 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
BI257224 cervical carcinoma cell line, cervix .b 61 to 911 65 to 906 L12S N203K E215G Q216A S222A ...     842/907
(92 %)
23 diff
(97.5 %id)
AK023156   .b 63 to 3459 1 to 3397 exact tiling clone, available from FLJ,   3397/3397
(100 %)
1 diff
(100.0 %id)
AU131199   .b 64 to 845 2 to 776   capped   775/778
(99 %)
17 diff
(97.9 %id)
DB026405 testis .b 64 to 626 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
DB231119 trachea .b 64 to 629 2 to 567   capped   566/566
(100 %)
1 diff
(99.9 %id)
AK289760 brain .b 71 to 1649 1 to 1579 K62E     1579/1579
(100 %)
1 diff
(100.0 %id)
DA221886 brain .b 72 to 614 2 to 544   capped   543/543
(100 %)
1 diff
(99.9 %id)
DB214643 trachea .b 72 to 610 2 to 540   capped   539/539
(100 %)
0 diff
(100 %id)
BM045844 carcinoma, cell line, Prostate .b 74 to 825 1 to 749       749/757
(98 %)
22 diff
(97.1 %id)
BM046826 carcinoma, cell line, Prostate .b 74 to 911 1 to 842 H76Q F195V Q196S K197E L198A ...     842/842
(100 %)
15 diff
(98.3 %id)
BM049138 carcinoma, cell line, Prostate .b 74 to 815 1 to 757       753/757
(99 %)
32 diff
(95.8 %id)
BC041060 Prostate, carcinoma .b 75 to 1328 1 to 1254 exact available from MGC, AAA   1254/1254
(100 %)
1 diff
(100.0 %id)
NM_213607.1   .b 75 to 1328 1 to 1254 exact RefSeq, AAA   1254/1254
(100 %)
1 diff
(100.0 %id)
DB034139 testis .b 78 to 654 2 to 581   capped   580/580
(100 %)
4 diff
(99.4 %id)
BI918414 brain .b 84 to 921 28 to 868 G49C C191V K192P G193R L194A ...     841/869
(96 %)
37 diff
(95.8 %id)
TI_57238231   .b 84 to 921 28 to 868 G49C C191V K192P G193R L194A ...     841/869
(96 %)
37 diff
(95.8 %id)
BG385700 adenocarcinoma cell line, colon .b 87 to 811 1 to 703       703/704
(99 %)
22 diff
(96.9 %id)
BE796577 lung, small cell carcinoma .b 99 to 930 1 to 830 F195S N203X L211A S212Q W213L ...     830/1073
(77 %)
16 diff
(98.6 %id)
BM687000 eye, optic nerve .b 147 to 600 1 to 454   fully sequenced,   454/454
(100 %)
6 diff
(98.7 %id)
TI_1948224456   .b 157 to 885 859 to 127       733/1276
(57 %)
29 diff
(97.8 %id)
TI_1948224764   .b 157 to 723 124 to 695       572/1224
(46 %)
29 diff
(97.7 %id)
TI_1948225085   .b 157 to 569 128 to 540       413/439
(94 %)
6 diff
(98.7 %id)
TI_1948225405   .b 157 to 838 126 to 808       683/1415
(48 %)
19 diff
(98.7 %id)
EL736050 mixed .b 158 to 757 1 to 600       600/600
(100 %)
2 diff
(99.7 %id)
DA202938 brain .b 236 to 802 2 to 568   capped   567/567
(100 %)
1 diff
(99.9 %id)
TI_1948225086   .b 300 to 885 705 to 120       586/1321
(44 %)
8 diff
(99.4 %id)
CB852094 Human Lung Epithelial cells, lung .b 304 to 1037 752 to 19   AAA   734/734
(100 %)
0 diff
(100 %id)
CA430667 cell lines, Chondrosarcoma .b 418 to 1040 642 to 19   AAA   624/624
(100 %)
2 diff
(99.7 %id)
TI_1948225087   .b 491 to 885 517 to 123       395/422
(93 %)
0 diff
(100 %id)
TI_1948225407   .b 528 to 885 482 to 125       358/385
(92 %)
0 diff
(100 %id)
BF516604   .b 562 to 1045 501 to 18   AAA   484/484
(100 %)
0 diff
(100 %id)
CA308459 Alveolar Macrophage, lung .b 569 to 1040 490 to 19   AAA   472/472
(100 %)
11 diff
(97.7 %id)
BU727473 eye, optic nerve .b 570 to 1040 489 to 19   fully sequenced, AAA   471/471
(100 %)
1 diff
(99.8 %id)
BU156863 melanotic melanoma, cell line, skin .b 678 to 1040 1 to 363   AAA   363/363
(100 %)
2 diff
(99.5 %id)
BU156858 melanotic melanoma, cell line, skin .b 678 to 1040 1 to 363   AAA   363/363
(100 %)
1 diff
(99.8 %id)
DR006604 Spleen .b 1095 to 1624 8 to 537       530/537
(98 %)
10 diff
(98.2 %id)
BQ448043 Knee, Osteoarthritic Cartilage .b 1157 to 1748 610 to 19   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 592/610
(97 %)
0 diff
(100 %id)
TI_149275387   .b 1248 to 1762 652 to 141   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 512/864
(59 %)
0 diff
(100 %id)
BU676608 lung, Primary Lung Epithelial Cells .b 1252 to 1762 525 to 18   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 508/525
(96 %)
0 diff
(100 %id)
AI189136 uterus .b 1353 to 1762 420 to 12   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 409/424
(96 %)
0 diff
(100 %id)
AW102599 pooled .b 1362 to 1761 400 to 1       400/400
(100 %)
3 diff
(99.3 %id)
BM712943 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 1373 to 1526 1 to 154   fully sequenced, Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 154/154
(100 %)
0 diff
(100 %id)
TI_151802035   .b 1373 to 1762 55 to 447   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 393/1008
(38 %)
4 diff
(99.7 %id)
AA983856 pooled .b 1393 to 1761 369 to 1       369/369
(100 %)
1 diff
(99.8 %id)
AI206936 pooled germ cell tumors .b 1397 to 1735 339 to 1       339/339
(100 %)
0 diff
(100 %id)
AW013940   .b 1422 to 1762 357 to 17   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 341/357
(95 %)
0 diff
(100 %id)
BM673917 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 1496 to 1768 284 to 12   fully sequenced, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 273/284
(96 %)
5 diff
(98.3 %id)
DB039256 testis .b 1676 to 2234 2 to 563   capped   562/562
(100 %)
3 diff
(99.5 %id)
DB032703 testis .b 1710 to 2250 2 to 542   capped   541/541
(100 %)
1 diff
(99.9 %id)
R13111 whole brain .b 1909 to 2241 1 to 348       348/405
(85 %)
17 diff
(95.9 %id)
BU173698 epithelioid carcinoma, Pancreas .b 2081 to 2949 55 to 937       883/952
(92 %)
29 diff
(97.0 %id)
AA470025   .b 2119 to 2650 1 to 530       530/530
(100 %)
9 diff
(98.4 %id)
TI_149296974   .b 2656 to 3459 885 to 86   AAA   800/945
(84 %)
11 diff
(98.9 %id)
TI_149312043   .b 2661 to 3452 875 to 88   AAA   788/929
(84 %)
12 diff
(98.8 %id)
BM977766 lung, Primary Lung Cystic Fibrosis EpithelialCells .b 2661 to 3452 806 to 19   AAA   788/812
(97 %)
12 diff
(98.6 %id)
BM982119 lung, Primary Lung Cystic Fibrosis EpithelialCells .b 2710 to 3459 768 to 19   AAA   750/750
(100 %)
2 diff
(99.8 %id)
BU625297 cell lines, Enchondroma .b 2711 to 3452 761 to 19   tiling clone, AAA   743/743
(100 %)
1 diff
(99.9 %id)
AI858167 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .b 2740 to 3158 435 to 17   AAA   419/419
(100 %)
5 diff
(98.9 %id)
BM929956 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 2763 to 3328 1 to 566       566/566
(100 %)
1 diff
(99.9 %id)
BM932248 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 2863 to 3452 1 to 590   AAA   590/590
(100 %)
2 diff
(99.7 %id)
AU152986   .b 2915 to 3459 545 to 1       545/547
(99 %)
10 diff
(98.2 %id)
AA412293   .b 2933 to 3454 523 to 2       522/524
(99 %)
0 diff
(100 %id)
DB382775   .b 2985 to 3452 478 to 1       478/559
(85 %)
23 diff
(95.9 %id)
AW450073   .b 3106 to 3444 10 to 348     Submitted on the opposite strand 339/348
(97 %)
7 diff
(98.0 %id)
AI340022 carcinoid, lung .b 3128 to 3414 1 to 287     Submitted on the opposite strand 287/287
(100 %)
0 diff
(100 %id)
AI302732 carcinoid, lung .b 3129 to 3414 1 to 286     Submitted on the opposite strand 286/286
(100 %)
3 diff
(99.0 %id)
R40590 whole brain .b 3134 to 3459 345 to 12   AAA   334/343
(97 %)
14 diff
(96.0 %id)
FN169760 breast carcinoma .b 3154 to 3262 1 to 107       107/107
(100 %)
2 diff
(98.2 %id)
AW236805 pooled germ cell tumors .b 3158 to 3454 301 to 5       297/301
(98 %)
0 diff
(100 %id)
BF062296 pooled germ cell tumors .b 3158 to 3454 301 to 5       297/301
(98 %)
0 diff
(100 %id)
BF054956 pooled .b 3206 to 3451 250 to 1       250/250
(100 %)
4 diff
(98.4 %id)
AI962524 pooled germ cell tumors .b 3214 to 3408 195 to 1       195/195
(100 %)
1 diff
(99.5 %id)
AI203333 pooled germ cell tumors .b 3215 to 3457 243 to 1       243/243
(100 %)
0 diff
(100 %id)
AI655404 pooled germ cell tumors .b 3215 to 3457 243 to 1       243/243
(100 %)
0 diff
(100 %id)
AI612938 serous papillary carcinoma, high grade, 2pooled tumors, uterus .b 3274 to 3459 197 to 10       188/197
(95 %)
0 diff
(100 %id)
DB085134 testis .c 1 to 546 2 to 547   tiling clone, capped   546/546
(100 %)
0 diff
(100 %id)
DB092503 testis .c 14 to 579 2 to 568   capped   567/567
(100 %)
1 diff
(99.9 %id)
DA193299 amygdala .c 18 to 615 2 to 599   capped   598/598
(100 %)
0 diff
(100 %id)
DB218400 trachea .c 24 to 564 2 to 542   capped   541/541
(100 %)
0 diff
(100 %id)
DB451789.
matches multiple genes
testis .c 34 to 529 1 to 499     also hits gene GFAP 499/499
(100 %)
13 diff
(97.4 %id)
BE885192 leiomyosarcoma, uterus .c 64 to 795 1 to 729 C133A L134S F135S Q136R T137Q ... tiling clone,   729/774
(94 %)
26 diff
(96.7 %id)
BE888143 leiomyosarcoma, uterus .c 70 to 640 1 to 571   tiling clone,   571/571
(100 %)
0 diff
(100 %id)
DA478389   .d 1 to 571 2 to 572   tiling clone, capped   571/572
(99 %)
1 diff
(99.9 %id)
DA198925 brain .d 15 to 589 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
BF031623 hypernephroma, Kidney .d 359 to 976 1 to 626 L12W E13R E15S L16C Q17R ... tiling clone,   626/967
(64 %)
33 diff
(96.6 %id)
DB024698 testis .e 1 to 558 6 to 565 L20P T21H A22C D23* tiling clone, capped   564/564
(100 %)
3 diff
(99.5 %id)
DA749894   .f 1 to 570 2 to 571 exact tiling clone, capped   570/570
(100 %)
0 diff
(100 %id)
DB516366.
matches multiple genes
testis .g-u 1 to 462 462 to 1     also hits gene GFAP 462/464
(99 %)
0 diff
(100 %id)
DB516617.
matches multiple genes
testis .g-u 1 to 437 437 to 1     also hits gene GFAP 437/439
(99 %)
0 diff
(100 %id)
DB524253.
matches multiple genes
testis .g-u 1 to 481 481 to 1 exact tiling clone, also hits gene GFAP 481/483
(99 %)
0 diff
(100 %id)
AK091530 brain Gene CCDC103, variant not shown       available from FLJ, This clone was ignored    
AX747040   Gene CCDC103, variant not shown         This clone was ignored    
DB316073 brain Gene CCDC103, variant not shown         This clone was ignored    
DA505644 brain Gene CCDC103, variant not shown       capped This clone was ignored    
BG752186 eye, normal pigmented retinal epithelium Gene CCDC103, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C