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Gene SBK1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
98 supporting clones for gene SBK1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AY874862   .a 1 to 4984 1 to 4984 exact tiling clone, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 4984/4984
(100 %)
0 diff
(100 %id)
CX165120 human embryonic stem cells differentiated toan early endodermal cell type .a 1 to 772 1 to 772       772/772
(100 %)
0 diff
(100 %id)
NM_001024401.2   .a 1 to 4984 1 to 4984 exact RefSeq, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 4984/4984
(100 %)
0 diff
(100 %id)
BQ071837 brain, neuroblastoma, cell line .a 21 to 786 1 to 766       766/1045
(73 %)
4 diff
(99.7 %id)
CN290850 embryonic stem cells, DMSO-treated H9 cellline .a 49 to 446 1 to 398       398/398
(100 %)
0 diff
(100 %id)
DN831602 pooled .a 968 to 1696 729 to 1     Submitted on the opposite strand 729/729
(100 %)
2 diff
(99.8 %id)
AJ749661 colon .a 973 to 1218 1 to 247       247/247
(100 %)
1 diff
(99.6 %id)
DN831601 pooled .a 995 to 1725 1 to 728       728/730
(99 %)
8 diff
(99.0 %id)
BY799535 eye .a 1169 to 1392 1 to 224       224/224
(100 %)
13 diff
(94.2 %id)
BG683070 brain, neuroblastoma, cell line .a 1240 to 1935 1 to 696       696/888
(78 %)
12 diff
(98.7 %id)
CN281281 embryonic stem cells, cell lines H1, H7, andH9 .a 1710 to 1924 1 to 215       215/215
(100 %)
1 diff
(99.6 %id)
CN287386 embryonic stem cells, cell lines H1, H7, andH9 .a 2253 to 2804 1 to 545       545/545
(100 %)
6 diff
(98.9 %id)
BU848749 ovary, teratocarcinoma, cell line .a 2299 to 3031 1 to 733       733/959
(76 %)
12 diff
(98.8 %id)
BF743616 breast .a 2340 to 2498 170 to 13     Submitted on the opposite strand 271/289
(93 %)
3 diff
(99.0 %id)
BM549555 astrocytoma grade IV, cell line, brain .a 2348 to 2863 91 to 615       615/1119
(54 %)
18 diff
(98.4 %id)
BM910783 astrocytoma grade IV, cell line, brain .a 2348 to 2942 90 to 691       691/1180
(58 %)
22 diff
(98.2 %id)
BM552247 astrocytoma grade IV, cell line, brain .a 2350 to 3061 95 to 816       816/1074
(75 %)
44 diff
(96.0 %id)
BE313430 brain, neuroblastoma .a 2386 to 3056 1 to 675       675/686
(98 %)
26 diff
(96.3 %id)
BY799736 eye .a 2547 to 3150 1 to 604       604/604
(100 %)
4 diff
(99.4 %id)
AA323296 brain, cerebellum .a 2567 to 2836 1 to 270       270/270
(100 %)
2 diff
(99.3 %id)
BE791479 lung, small cell carcinoma .a 2591 to 3368 1 to 773       773/974
(79 %)
18 diff
(98.2 %id)
AW960891   .a 2704 to 3347 1 to 644       644/644
(100 %)
4 diff
(99.4 %id)
BQ069732 brain, neuroblastoma, cell line .a 2770 to 3629 1 to 873       873/1024
(85 %)
27 diff
(97.4 %id)
AL390134 brain .a 2862 to 4984 1 to 2123   available from DKFZ, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 2123/2123
(100 %)
2 diff
(100.0 %id)
BF984378 duodenal adenocarcinoma, cell line, small intestine .a 2862 to 3473 1 to 608       608/930
(65 %)
5 diff
(99.5 %id)
CN429492 embryonic stem cells, DMSO-treated H9 cellline .a 2949 to 3537 9 to 599       591/599
(98 %)
0 diff
(100 %id)
AL537910 brain, fetal brain .a 2950 to 3978 1 to 1025       1025/1028
(99 %)
12 diff
(98.9 %id)
CR603791 fetal brain .a 2951 to 4701 1 to 1749       1749/1749
(100 %)
3 diff
(99.9 %id)
BG385849 adenocarcinoma cell line, colon .a 3126 to 3684 1 to 570       570/570
(100 %)
30 diff
(94.8 %id)
BM932036 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 3150 to 3690 1 to 541     Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 541/571
(94 %)
6 diff
(99.0 %id)
CN429491 embryonic stem cells, DMSO-treated H9 cellline .a 3165 to 3411 8 to 254       247/254
(97 %)
0 diff
(100 %id)
AW876823 pnet .a 3250 to 3810 573 to 15       559/573
(97 %)
0 diff
(100 %id)
BG910327 anaplastic oligodendroglioma with 1p/19qloss, brain .a 3365 to 3987 11 to 633       623/633
(98 %)
0 diff
(100 %id)
BY799835 eye .a 3524 to 4056 1 to 533       533/533
(100 %)
0 diff
(100 %id)
CX871246 embryonic stem .a 3663 to 4108 1 to 446       446/446
(100 %)
1 diff
(99.8 %id)
BF856576 prostate_tumor .a 3708 to 3815 120 to 14     Submitted on the opposite strand 107/120
(89 %)
0 diff
(100 %id)
AI935915 adenocarcinoma, Pancreas .a 4060 to 4466 405 to 1       405/405
(100 %)
1 diff
(99.8 %id)
AI619559 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .a 4086 to 4466 382 to 1       382/382
(100 %)
1 diff
(99.8 %id)
AA862255 carcinoid, lung .a 4091 to 4469 379 to 1       379/379
(100 %)
0 diff
(100 %id)
AW293099   .a 4108 to 4466 374 to 16   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 359/359
(100 %)
2 diff
(99.5 %id)
AW571994 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 4186 to 4467 280 to 1       280/280
(100 %)
9 diff
(96.8 %id)
CN429490 embryonic stem cells, DMSO-treated H9 cellline .a 4190 to 4471 1 to 282       282/282
(100 %)
0 diff
(100 %id)
AI002787   .a 4201 to 4466 265 to 1       265/312
(84 %)
7 diff
(97.8 %id)
AA346148 NULL, omentum .a 4242 to 4466 225 to 1       225/225
(100 %)
0 diff
(100 %id)
AA346149 NULL, omentum .a 4242 to 4466 1 to 225       225/225
(100 %)
0 diff
(100 %id)
AW964112   .a 4243 to 4483 1 to 243       243/379
(64 %)
4 diff
(99.0 %id)
AW196540 pooled germ cell tumors .a 4260 to 4466 207 to 1       207/207
(100 %)
0 diff
(100 %id)
AW245087 lung, small cell carcinoma .a 4284 to 4468 198 to 14   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 185/205
(90 %)
0 diff
(100 %id)
BF530699 anaplastic oligodendroglioma with 1p/19qloss, brain .a 4348 to 4987 1 to 661       661/695
(95 %)
46 diff
(93.4 %id)
CF455342 peripheral nervous system .a 4376 to 4984 30 to 638   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 609/638
(95 %)
0 diff
(100 %id)
TI_57231393   .a 4455 to 4984 110 to 639   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 530/530
(100 %)
4 diff
(99.3 %id)
BI869373 adenocarcinoma, cell line, Liver .a 4457 to 4984 1 to 528   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 528/528
(100 %)
4 diff
(99.3 %id)
BM687384 eye, optic nerve .a 4486 to 4874 9 to 397       389/397
(97 %)
0 diff
(100 %id)
TI_151739611   .a 4486 to 4991 619 to 114       506/635
(79 %)
0 diff
(100 %id)
BF447901 carcinoid, lung .a 4491 to 4992 506 to 5       502/506
(99 %)
0 diff
(100 %id)
BF446840 carcinoid, lung .a 4492 to 4989 501 to 4       498/501
(99 %)
0 diff
(100 %id)
BG329323 eye, retinoblastoma .a 4503 to 4987 1 to 489       489/939
(52 %)
10 diff
(99.0 %id)
AW236681 Kidney .a 4511 to 4992 482 to 1       482/482
(100 %)
9 diff
(98.2 %id)
AI952965 pooled germ cell tumors .a 4521 to 4992 472 to 1       472/472
(100 %)
1 diff
(99.8 %id)
BE256339 eye, retinoblastoma .a 4522 to 4984 1 to 465   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 465/465
(100 %)
3 diff
(99.4 %id)
BE256351 eye, retinoblastoma .a 4524 to 4992 1 to 463       463/465
(99 %)
8 diff
(98.3 %id)
BM693530 eye, Retina Foveal and Macular .a 4527 to 4827 132 to 432       301/432
(69 %)
0 diff
(100 %id)
AW007385 anaplastic oligodendroglioma, brain .a 4532 to 4991 460 to 1       460/460
(100 %)
2 diff
(99.6 %id)
BF527829 anaplastic oligodendroglioma with 1p/19qloss, brain .a 4534 to 4984 50 to 499   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 450/499
(90 %)
0 diff
(100 %id)
AW974030   .a 4541 to 4983 443 to 1     Submitted on the opposite strand 443/563
(78 %)
0 diff
(100 %id)
AW974031   .a 4541 to 4983 443 to 1     Submitted on the opposite strand 443/495
(89 %)
5 diff
(99.0 %id)
BE254831 eye, retinoblastoma .a 4541 to 4981 68 to 500       433/500
(86 %)
0 diff
(100 %id)
AI342856 carcinoid, lung .a 4566 to 4991 426 to 1       426/426
(100 %)
0 diff
(100 %id)
CA337593 1st pharyngeal arch (pooled) .a 4591 to 4966 1 to 376   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 376/377
(99 %)
2 diff
(99.5 %id)
BQ186164 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 4595 to 4986 1 to 392   fully sequenced, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 392/392
(100 %)
2 diff
(99.5 %id)
AA483770 Kidney .a 4601 to 4992 399 to 9       391/400
(97 %)
0 diff
(100 %id)
AA580062 breast .a 4601 to 4990 390 to 1       390/391
(99 %)
0 diff
(100 %id)
BI822045 pooled brain, lung, testis .a 4620 to 4984 1 to 354   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 354/354
(100 %)
9 diff
(97.5 %id)
AI242753 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 4628 to 4991 363 to 1       363/363
(100 %)
8 diff
(97.8 %id)
AI937763 anaplastic oligodendroglioma, brain .a 4628 to 4992 372 to 9       364/372
(97 %)
0 diff
(100 %id)
AI214387   .a 4629 to 4992 366 to 3       364/366
(99 %)
0 diff
(100 %id)
AI634489 carcinoid, lung .a 4631 to 4991 395 to 35   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 361/361
(100 %)
16 diff
(95.6 %id)
BE348549 carcinoid, lung .a 4631 to 4988 358 to 1       358/358
(100 %)
7 diff
(98.1 %id)
BE221076 carcinoid, lung .a 4650 to 4992 343 to 1       343/343
(100 %)
2 diff
(99.5 %id)
BE670717 carcinoid, lung .a 4651 to 4992 344 to 3       342/353
(96 %)
0 diff
(100 %id)
BE674644 carcinoid, lung .a 4688 to 4976 289 to 1       289/289
(100 %)
0 diff
(100 %id)
BG150407 carcinoid, lung .a 4688 to 4989 305 to 4       302/305
(99 %)
0 diff
(100 %id)
AI962502 pooled germ cell tumors .a 4689 to 4991 316 to 14   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 303/303
(100 %)
0 diff
(100 %id)
AI937601 anaplastic oligodendroglioma, brain .a 4699 to 4990 302 to 11       292/302
(96 %)
0 diff
(100 %id)
AA401158 ovarian tumor, ovary .a 4700 to 4983 1 to 284       284/284
(100 %)
2 diff
(99.3 %id)
AI916079 colon, colon tumor, RER+ .a 4729 to 4990 262 to 1       262/263
(99 %)
0 diff
(100 %id)
AA454756 ovarian tumor, ovary .a 4734 to 4991 274 to 17   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 258/258
(100 %)
0 diff
(100 %id)
AA922442 pooled germ cell tumors .a 4751 to 4992 242 to 1       242/242
(100 %)
1 diff
(99.6 %id)
BQ184716 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 4761 to 4984 240 to 17   fully sequenced, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 224/224
(100 %)
0 diff
(100 %id)
AI248867 brain, tumor, 5 pooled (see description) .a 4812 to 4991 187 to 8       180/187
(96 %)
0 diff
(100 %id)
AL537909 brain, fetal brain Gene SBK1, variant not shown         This clone was ignored    
BX452165 brain, fetal brain Gene SBK1, variant not shown         This clone was ignored    
BQ188314 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid Gene SBK1, variant not shown       fully sequenced, AAA Suspected internal deletion, this clone was ignored    
CK299802 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid Gene SBK1, variant not shown       fully sequenced, AAA Suspected internal deletion, this clone was ignored    
TI_151732153   Gene SBK1, variant not shown       AAA Suspected internal deletion, this clone was ignored    
BM983519 lung Gene SBK1, variant not shown       AAA Suspected internal deletion, this clone was ignored    
CN289096 embryonic stem cells, DMSO-treated H9 cellline Gene SBK1, variant not shown         Suspected internal deletion, this clone was ignored    
DN989967 brain, whole brain Gene SBK1, variant not shown         Suspected internal deletion, this clone was ignored    
BG165228 hypernephroma, cell line, Kidney Gene SBK1, variant not shown         This clone was ignored    
TI_149281817   Gene SBK1, variant not shown       AAA Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA Expression Tissue Function, regulation, related genes CI