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Gene C1orf187TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
108 supporting clones for gene C1orf187 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA736559   .a 1 to 773 2 to 771   tiling clone, to resequence, capped   770/774
(99 %)
13 diff
(98.4 %id)
DB369068   .a 1211 to 1779 565 to 1   tiling clone, to resequence,   565/569
(99 %)
20 diff
(96.5 %id)
DA701516   .b 1 to 494 2 to 494   tiling clone, capped   493/493
(100 %)
2 diff
(99.6 %id)
DA768140 brain .b 18 to 284 2 to 268   capped   267/267
(100 %)
1 diff
(99.7 %id)
DA804707 brain .b 226 to 795 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA925743 small intestine .b 233 to 811 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
DA726442   .b 236 to 798 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
DA019456   .b 242 to 756 2 to 516   capped   515/515
(100 %)
0 diff
(100 %id)
DA713180   .b 242 to 772 2 to 532   capped   531/531
(100 %)
1 diff
(99.9 %id)
DA730018   .b 242 to 794 2 to 555   capped   554/557
(99 %)
15 diff
(97.4 %id)
DA754122   .b 242 to 791 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DA768933 brain .b 242 to 693 2 to 453   capped   452/452
(100 %)
0 diff
(100 %id)
BM928129 brain .b 243 to 1030 10 to 804       795/1115
(71 %)
28 diff
(97.5 %id)
BU855375 ovary, teratocarcinoma, cell line .b 244 to 973 46 to 790       743/932
(79 %)
30 diff
(96.8 %id)
BC111064 Brain, fetal, whole pooled .b 253 to 2341 1 to 2089   tiling clone, AAA Possibly primed on the genome, locally A rich (20/20 A in genome downstream of last aligned base) 2089/2089
(100 %)
0 diff
(100 %id)
NM_198545.3   .b 255 to 2027 1 to 1773   RefSeq,   1773/1773
(100 %)
0 diff
(100 %id)
DA500904 brain .b 261 to 809 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
DA508204 brain .b 261 to 831 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA526246 brain .b 261 to 813 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
DA612653   .b 261 to 856 2 to 597   capped   596/596
(100 %)
2 diff
(99.7 %id)
DA701172   .b 261 to 772 2 to 513   capped   512/512
(100 %)
0 diff
(100 %id)
DA722307   .b 261 to 802 2 to 544   capped   543/543
(100 %)
2 diff
(99.7 %id)
DA752970   .b 261 to 830 2 to 572   capped   571/571
(100 %)
2 diff
(99.7 %id)
DA786395 brain .b 261 to 703 2 to 445   capped   444/444
(100 %)
1 diff
(99.8 %id)
DA795797 brain .b 261 to 772 2 to 513   capped   512/512
(100 %)
0 diff
(100 %id)
AL536786 brain, fetal brain .b 262 to 1175 1 to 914       914/914
(100 %)
5 diff
(99.5 %id)
AL538969 brain, fetal brain .b 262 to 1332 1 to 1069       1069/1069
(100 %)
19 diff
(98.3 %id)
DA491311 brain .b 263 to 832 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA698850   .b 263 to 800 2 to 539   capped   538/538
(100 %)
0 diff
(100 %id)
DA702847   .b 263 to 762 2 to 501   capped   500/500
(100 %)
1 diff
(99.8 %id)
DA725065   .b 263 to 816 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA769156 brain .b 263 to 729 2 to 468   capped   467/467
(100 %)
0 diff
(100 %id)
DA796648 brain .b 263 to 714 2 to 453   capped   452/452
(100 %)
1 diff
(99.8 %id)
DB284252 uterus .b 263 to 811 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
AA171403   .b 266 to 697 1 to 429       429/429
(100 %)
17 diff
(96.1 %id)
DA783582 brain .b 266 to 641 2 to 377   capped   376/376
(100 %)
0 diff
(100 %id)
AL537197 brain, fetal brain .b 267 to 1151 5 to 887       883/887
(99 %)
9 diff
(99.0 %id)
DA808694 brain .b 267 to 714 2 to 449   capped   448/448
(100 %)
0 diff
(100 %id)
CN400450 embryonic stem cells, cell lines H1, H7, andH9 .b 273 to 863 13 to 603       591/603
(98 %)
6 diff
(99.1 %id)
AW160951 brain, frontal lobe .b 274 to 731 1 to 458       458/458
(100 %)
0 diff
(100 %id)
CN400451 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 280 to 539 1 to 260       260/260
(100 %)
0 diff
(100 %id)
AY358750   .b 298 to 1578 8 to 1285 L20Q E21L L22S S23L L24A ...     1278/1285
(99 %)
8 diff
(99.4 %id)
AB301919   .b 395 to 1444 1 to 1050 L37F     1050/1050
(100 %)
1 diff
(100.0 %id)
DA701498   .b 413 to 860 2 to 449   capped   448/448
(100 %)
0 diff
(100 %id)
DA796012 brain .b 513 to 978 2 to 467   capped   466/466
(100 %)
0 diff
(100 %id)
BX453564 brain, fetal brain .b 605 to 1513 906 to 1     Submitted on the opposite strand 906/910
(99 %)
17 diff
(98.2 %id)
DN991978 brain, whole brain .b 619 to 1126 9 to 516       508/516
(98 %)
6 diff
(98.9 %id)
BI160755 epithelioid carcinoma cell line, Pancreas .b 904 to 1612 1 to 711   available from MGC,   711/712
(99 %)
15 diff
(97.9 %id)
BC021286 Pancreas, epithelioid carcinoma .b 905 to 2341 1 to 1437   available from MGC, AAA Possibly primed on the genome, locally A rich (20/20 A in genome downstream of last aligned base) 1437/1437
(100 %)
3 diff
(99.8 %id)
DA496890 brain .b 966 to 1530 2 to 566   capped   565/565
(100 %)
2 diff
(99.7 %id)
DA785706 brain .b 976 to 1532 2 to 558   capped   557/562
(99 %)
1 diff
(99.9 %id)
BX410044 brain, fetal brain .b 1087 to 2027 1 to 933       935/934
(100 %)
17 diff
(98.2 %id)
AK311439   .b 1107 to 2194 1 to 1088       1088/1088
(100 %)
1 diff
(100.0 %id)
DA728151   .b 1109 to 1970 2 to 861   capped   860/860
(100 %)
10 diff
(98.9 %id)
CN400446 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 1254 to 1932 1 to 680       680/680
(100 %)
1 diff
(99.9 %id)
AL567594 brain, fetal brain .b 1332 to 2329 996 to 1       996/997
(99 %)
18 diff
(98.2 %id)
AL566492 brain, fetal brain .b 1369 to 2314 942 to 1       942/942
(100 %)
9 diff
(99.1 %id)
M78342   .b 1447 to 1630 184 to 1       184/351
(52 %)
0 diff
(100 %id)
AW162555 brain, frontal lobe .b 1760 to 2348 589 to 1       589/589
(100 %)
1 diff
(99.9 %id)
CV569767 cornea, eye .b 2148 to 2733 28 to 616   tiling clone,   589/616
(95 %)
6 diff
(99.1 %id)
AI700027 pooled germ cell tumors .b 2305 to 2699 394 to 1       394/394
(100 %)
2 diff
(99.5 %id)
AW590405 pooled germ cell tumors .b 2305 to 2699 396 to 1   tiling clone,   396/396
(100 %)
1 diff
(99.8 %id)
AI655716 pooled germ cell tumors .b 2306 to 2699 395 to 1       395/395
(100 %)
4 diff
(99.0 %id)
DA701297   .c 1 to 454 12 to 465 exact tiling clone, capped   454/454
(100 %)
0 diff
(100 %id)
DA790380 brain .d-u 1 to 508 2 to 509   tiling clone, capped   508/508
(100 %)
4 diff
(99.3 %id)
AK092318 brain .d-u 151 to 3336 1 to 3187 F33L S92G tiling clone, available from FLJ,   3187/3187
(100 %)
12 diff
(99.7 %id)
AX747479   .d-u 151 to 3336 1 to 3187 F33L S92G     3187/3187
(100 %)
12 diff
(99.7 %id)
DA777345 brain .d-u 152 to 718 2 to 568   capped   567/567
(100 %)
2 diff
(99.7 %id)
DA804022 brain .d-u 194 to 734 2 to 542   tiling clone, capped   541/541
(100 %)
1 diff
(99.9 %id)
DA784785 brain .d-u 595 to 1181 2 to 590 S75G V86X tiling clone, capped   589/589
(100 %)
7 diff
(98.9 %id)
DA774593 brain .d-u 667 to 1126 2 to 461 H84R capped   460/460
(100 %)
5 diff
(99.0 %id)
DA776632 brain .d-u 732 to 1318 2 to 589 L37F E38G M39D E40G F41V ... capped   588/588
(100 %)
10 diff
(98.3 %id)
DA521719 brain .d-u 749 to 1301 2 to 553 L37W E38R M39W E40S C42A ... capped   552/552
(100 %)
10 diff
(98.2 %id)
DA486847 brain .d-u 821 to 1366 2 to 546   tiling clone, capped   545/545
(100 %)
5 diff
(99.1 %id)
DA516868 brain .d-u 842 to 1371 2 to 531   capped   530/530
(100 %)
3 diff
(99.5 %id)
DA715970   .d-u 1151 to 1657 2 to 507   tiling clone, capped   506/506
(100 %)
3 diff
(99.5 %id)
DA031857   .d-u 1162 to 1703 2 to 543   capped   542/542
(100 %)
4 diff
(99.3 %id)
DA530239 brain .d-u 1170 to 1703 2 to 535   capped   534/534
(100 %)
5 diff
(99.1 %id)
DA794042 brain .d-u 1174 to 1669 2 to 496   capped   495/495
(100 %)
4 diff
(99.2 %id)
DA515526 brain .d-u 1183 to 1729 2 to 547   capped   546/546
(100 %)
2 diff
(99.7 %id)
DA772121 brain .d-u 1185 to 1760 2 to 576   capped   575/575
(100 %)
3 diff
(99.5 %id)
DA793144 brain .d-u 1404 to 1864 2 to 460   capped   459/461
(99 %)
3 diff
(99.4 %id)
DA488917 brain .d-u 1517 to 2091 2 to 576   capped   575/575
(100 %)
2 diff
(99.7 %id)
DA488472 brain .d-u 1542 to 2086 2 to 546   tiling clone, capped   545/545
(100 %)
1 diff
(99.9 %id)
T06576   .d-u 1655 to 2070 1 to 421       421/423
(99 %)
10 diff
(97.7 %id)
DA503502 brain .d-u 1857 to 2352 2 to 497   capped   496/496
(100 %)
0 diff
(100 %id)
BU856501 ovary, teratocarcinoma, cell line .d-u 1884 to 2607 1 to 728       728/838
(86 %)
8 diff
(99.1 %id)
CN400452 embryonic stem cells, cell lines H1, H7, andH9 .d-u 1939 to 2665 25 to 752       728/752
(96 %)
6 diff
(99.3 %id)
BX461156 brain, fetal brain .d-u 2248 to 3245 1 to 988       988/1002
(98 %)
21 diff
(98.0 %id)
R88528 brain .d-u 2262 to 2616 1 to 357       357/361
(98 %)
9 diff
(97.6 %id)
D81254 brain .d-u 2511 to 2806 1 to 295       295/295
(100 %)
5 diff
(98.4 %id)
D81654 brain .d-u 2511 to 2802 1 to 287       287/287
(100 %)
6 diff
(98.0 %id)
CN400447 embryonic stem cells, DMSO-treated H9 cellline .d-u 2553 to 3245 1 to 693       693/693
(100 %)
1 diff
(99.9 %id)
DB326049 brain .d-u 2785 to 3336 553 to 1       553/553
(100 %)
2 diff
(99.7 %id)
AW005545 anaplastic oligodendroglioma, brain .d-u 2837 to 3347 511 to 1       511/511
(100 %)
1 diff
(99.9 %id)
AW474244 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .d-u 2916 to 3348 434 to 1       434/434
(100 %)
2 diff
(99.6 %id)
DB316790 brain .d-u 2993 to 3336 345 to 1       345/345
(100 %)
1 diff
(99.8 %id)
BX452073 brain, fetal brain .d-u 3023 to 3803 1 to 782   tiling clone,   782/860
(90 %)
40 diff
(95.4 %id)
BX455428 brain, fetal brain .d-u 3136 to 3867 735 to 1     Submitted on the opposite strand 735/895
(82 %)
41 diff
(95.5 %id)
BX102570 pooled germ cell tumors .d-u 3400 to 3878 209 to 688   AAA Possibly primed on the genome, locally A rich (21/24 A in genome downstream of last aligned base) 480/688
(69 %)
10 diff
(98.6 %id)
AI653164 pooled germ cell tumors .d-u 3400 to 3878 479 to 1   tiling clone,   479/578
(82 %)
0 diff
(100 %id)
AA339404 brain .d-u 3413 to 3725 1 to 314       314/314
(100 %)
4 diff
(98.8 %id)
BE765032 nervous_tumor .d-u 3425 to 3546 22 to 143       122/143
(85 %)
6 diff
(95.9 %id)
AA974305 pooled germ cell tumors .d-u 3535 to 3878 344 to 1       344/344
(100 %)
0 diff
(100 %id)
AI598232 anaplastic oligodendroglioma, brain .d-u 3602 to 3875 277 to 4       274/277
(98 %)
0 diff
(100 %id)
AA577764 gastric tumor, stomach .d-u 3730 to 4265 1 to 536   tiling clone, Submitted on the opposite strand 536/536
(100 %)
0 diff
(100 %id)
DA807184 brain .e 1 to 559 2 to 560 exact tiling clone, capped   559/559
(100 %)
0 diff
(100 %id)
BQ082378 Ascites, stomach .f-u 1 to 501 1 to 501 exact tiling clone,   501/501
(100 %)
1 diff
(99.9 %id)
BM713527 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid Gene C1orf187, variant not shown       fully sequenced, AAA Suspected internal deletion, this clone was ignored    
BU739555 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid Gene C1orf187, variant not shown       fully sequenced, AAA Suspected internal deletion, this clone was ignored    
AK125437 brain Gene C1orf187, variant not shown       available from FLJ, Suspected internal deletion, this clone was ignored    
AK075558   Gene C1orf187, variant not shown         This clone was ignored    
DA488305 brain Gene C1orf187, variant not shown       capped This clone was ignored    
DB315992 brain Gene C1orf187, variant not shown         This clone was ignored    
DA503801 brain Gene C1orf187, variant not shown       capped This clone was ignored    
DB326619 brain Gene C1orf187, variant not shown              
DA792897 brain Gene C1orf187, variant not shown       capped      
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d-u, .e, .f-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC