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Gene CCDC144CandNOS2P3TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
97 supporting clones for gene CCDC144CandNOS2P3 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NR_023380.1   CCDC144CandNOS2P3.a 1 to 4204 1 to 4204 exact RefSeq, tiling clone,   4204/4204
(100 %)
0 diff
(100 %id)
TI_1241110847.
matches multiple genes
  CCDC144CandNOS2P3.a 149 to 980 839 to 6     also hits gene CCDC144AandFAM106C 834/882
(94 %)
30 diff
(96.6 %id)
TI_927047081.
matches multiple genes
  CCDC144CandNOS2P3.a 386 to 1386 1005 to 1     also hits gene CCDC144AandFAM106C 1003/1202
(83 %)
44 diff
(96.4 %id)
TI_985974197   CCDC144CandNOS2P3.a 1956 to 2623 1 to 666   AAA   666/666
(100 %)
7 diff
(99.0 %id)
DV080283 pooled CCDC144CandNOS2P3.a 1977 to 2622 1 to 646       646/646
(100 %)
3 diff
(99.6 %id)
DV080284 pooled CCDC144CandNOS2P3.a 2033 to 2591 559 to 1     Submitted on the opposite strand 559/564
(99 %)
7 diff
(98.8 %id)
TI_44351052   CCDC144CandNOS2P3.b 1 to 732 122 to 879       758/879
(86 %)
38 diff
(95.7 %id)
BI562636 testis CCDC144CandNOS2P3.b 4 to 732 1 to 754   tiling clone, available from MGC,   754/754
(100 %)
43 diff
(94.3 %id)
BC036241 testis CCDC144CandNOS2P3.b 8 to 2833 1 to 2828   tiling clone, available from MGC, AAA   2828/2828
(100 %)
4 diff
(99.9 %id)
BX955812   CCDC144CandNOS2P3.b 1331 to 1855 189 to 714       526/714
(73 %)
6 diff
(99.2 %id)
AL162090 amygdala CCDC144CandNOS2P3.c 1 to 664 1 to 664   tiling clone, Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 664/664
(100 %)
1 diff
(99.9 %id)
BU567699 testis CCDC144CandNOS2P3.c 687 to 1381 1 to 701   tiling clone,   701/808
(86 %)
23 diff
(97.2 %id)
AL162091 amygdala CCDC144CandNOS2P3.c 1511 to 2099 608 to 20   tiling clone, AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 589/589
(100 %)
11 diff
(98.2 %id)
BU570253 testis CCDC144CandNOS2P3.d 1 to 686 1 to 696 G133S K189E R201K N202K M203Y ... tiling clone,   696/852
(81 %)
18 diff
(97.9 %id)
BC044655 Brain, adult medulla CCDC144CandNOS2P3.e 1 to 2834 1 to 2834 V95I tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 2834/2834
(100 %)
4 diff
(99.9 %id)
TI_57173956   CCDC144CandNOS2P3.e 1 to 588 28 to 616       589/616
(95 %)
6 diff
(99.1 %id)
BI826099 brain, medulla CCDC144CandNOS2P3.e 2 to 588 1 to 588   available from MGC,   588/588
(100 %)
2 diff
(99.7 %id)
AA393074   CCDC144CandNOS2P3.e 2026 to 2533 32 to 538   fully sequenced,   507/538
(94 %)
14 diff
(97.4 %id)
AA431389.
matches multiple genes
  CCDC144CandNOS2P3.e 2064 to 2632 1 to 567     also hits gene NOS2P2 567/567
(100 %)
8 diff
(98.6 %id)
AA432369.
matches multiple genes
  CCDC144CandNOS2P3.e 2321 to 2836 519 to 4   tiling clone, also hits gene NOS2P2, spoyfeyby 516/519
(99 %)
0 diff
(100 %id)
AA719036   CCDC144CandNOS2P3.e 2336 to 2836 497 to 3       495/497
(99 %)
0 diff
(100 %id)
AI640427 adenocarcinoma, Pancreas CCDC144CandNOS2P3.e 2400 to 2829 460 to 31   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 430/430
(100 %)
9 diff
(98.0 %id)
AA991843   CCDC144CandNOS2P3.e 2410 to 2836 428 to 3       426/456
(93 %)
0 diff
(100 %id)
AA412162   CCDC144CandNOS2P3.e 2503 to 2846 348 to 3   fully sequenced,   346/348
(99 %)
12 diff
(96.6 %id)
AA431372   CCDC144CandNOS2P3.e 2606 to 2834 259 to 486       391/486
(80 %)
25 diff
(94.9 %id)
CD243752 testis CCDC144CandNOS2P3.f 1 to 517 1 to 527 L73P Q74S K78N R79E N80M ... tiling clone,   527/912
(57 %)
63 diff
(93.1 %id)
BF085012.
matches multiple genes
placenta_normal CCDC144CandNOS2P3.g 1 to 211 1 to 211   tiling clone, also hits gene CCDC144AandFAM106C 211/218
(96 %)
5 diff
(97.8 %id)
DB086578 testis CCDC144CandNOS2P3.g 46 to 613 2 to 569   tiling clone, capped   568/568
(100 %)
1 diff
(99.9 %id)
AL709302 human skeletal muscle CCDC144CandNOS2P3.g 486 to 1096 1 to 612   tiling clone,   612/612
(100 %)
2 diff
(99.7 %id)
AL043344 testis CCDC144CandNOS2P3.g 969 to 1705 1 to 736   tiling clone,   736/736
(100 %)
3 diff
(99.6 %id)
AK310665 thymus CCDC144CandNOS2P3.g 1183 to 2416 1 to 1234   tiling clone,   1234/1234
(100 %)
1 diff
(100.0 %id)
DB145390 thymus CCDC144CandNOS2P3.g 1184 to 1728 2 to 546   capped   545/545
(100 %)
1 diff
(99.9 %id)
BF094730.
matches multiple genes
uterus_tumor CCDC144CandNOS2P3.g 1373 to 1725 355 to 2     also hits gene CCDC144B 354/355
(99 %)
1 diff
(99.8 %id)
DB167341 kidney, tumor tissue CCDC144CandNOS2P3.g 1617 to 2198 2 to 584   capped   583/583
(100 %)
1 diff
(99.9 %id)
DB169889 kidney, tumor tissue CCDC144CandNOS2P3.g 1617 to 2191 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
TI_1520875515   CCDC144CandNOS2P3.g 1667 to 2854 1195 to 15       1181/1314
(89 %)
12 diff
(99.1 %id)
AV709843 adrenal gland CCDC144CandNOS2P3.g 1740 to 2145 1 to 406       406/406
(100 %)
0 diff
(100 %id)
CN264802 embryonic stem cells, cell lines H1, H7, andH9 CCDC144CandNOS2P3.g 1984 to 2469 1 to 486       486/486
(100 %)
1 diff
(99.8 %id)
BX101043 ovarian tumor, ovary CCDC144CandNOS2P3.g 2113 to 2826 1 to 714       714/714
(100 %)
2 diff
(99.8 %id)
AA464031 ovarian tumor, ovary CCDC144CandNOS2P3.g 2113 to 2554 1 to 442       442/442
(100 %)
5 diff
(98.9 %id)
BF090821 nervous_tumor CCDC144CandNOS2P3.g 2163 to 2617 20 to 474       455/479
(94 %)
5 diff
(99.0 %id)
DB099307 testis CCDC144CandNOS2P3.g 2380 to 2969 2 to 591   tiling clone, capped   590/590
(100 %)
1 diff
(99.9 %id)
DA364233 subthalamic nucleus CCDC144CandNOS2P3.g 2383 to 2950 2 to 569   capped   568/568
(100 %)
2 diff
(99.7 %id)
BG436201 placenta CCDC144CandNOS2P3.g 2576 to 3288 1 to 717       717/784
(91 %)
10 diff
(98.8 %id)
BG620733 placenta CCDC144CandNOS2P3.g 2684 to 3421 1 to 726   tiling clone,   726/726
(100 %)
16 diff
(97.8 %id)
DA849238 placenta CCDC144CandNOS2P3.g 2737 to 3295 2 to 560   tiling clone, capped   559/559
(100 %)
0 diff
(100 %id)
AA464740 ovarian tumor, ovary CCDC144CandNOS2P3.g 2825 to 3172 348 to 1       348/348
(100 %)
2 diff
(99.5 %id)
DB079041.
matches multiple genes
testis CCDC144CandNOS2P3.h-u 1 to 542 2 to 545   tiling clone, to resequence, capped Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base), also hits gene CCDC144AandFAM106C 544/544
(100 %)
2 diff
(99.7 %id)
AL045801 testis CCDC144CandNOS2P3.h-u 33 to 693 1 to 661   tiling clone,   661/661
(100 %)
1 diff
(99.9 %id)
DB097001 testis CCDC144CandNOS2P3.h-u 338 to 913 2 to 578   tiling clone, capped   577/577
(100 %)
1 diff
(99.9 %id)
BX492371.
matches multiple genes
  CCDC144CandNOS2P3.h-u 392 to 732 160 to 500   tiling clone, also hits gene CCDC144AandFAM106C 341/500
(68 %)
6 diff
(98.8 %id)
AL703852 human skeletal muscle CCDC144CandNOS2P3.h-u 538 to 1136 1 to 600       600/600
(100 %)
5 diff
(99.2 %id)
DA092492 cerebellum CCDC144CandNOS2P3.h-u 683 to 1169 2 to 489   tiling clone, capped   488/488
(100 %)
2 diff
(99.6 %id)
DA105182 cerebellum CCDC144CandNOS2P3.h-u 796 to 1166 2 to 372   tiling clone, capped   371/371
(100 %)
0 diff
(100 %id)
CF454760 peripheral nervous system CCDC144CandNOS2P3.h-u 1897 to 2664 1 to 768 exact tiling clone,   768/769
(99 %)
1 diff
(99.9 %id)
AV652374 corresponding non cancerous liver tissue CCDC144CandNOS2P3.h-u 2478 to 2870 393 to 1       393/393
(100 %)
7 diff
(98.3 %id)
AV652709 corresponding non cancerous liver tissue CCDC144CandNOS2P3.h-u 2478 to 2870 393 to 1       393/393
(100 %)
7 diff
(98.3 %id)
DB514244.
matches multiple genes
testis CCDC144CandNOS2P3.h-u 2632 to 3304 1 to 673     Submitted on the opposite strand, also hits gene CCDC144AandFAM106C, CCDC144B 673/674
(99 %)
10 diff
(98.6 %id)
DB298397 cerebellum CCDC144CandNOS2P3.h-u 2654 to 3214 561 to 1   tiling clone,   561/561
(100 %)
2 diff
(99.7 %id)
DB340713.
matches multiple genes
testis CCDC144CandNOS2P3.h-u 2767 to 3305 551 to 13   to resequence, AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base), also hits gene CCDC144AandFAM106C 539/539
(100 %)
0 diff
(100 %id)
AW168958 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus CCDC144CandNOS2P3.h-u 2845 to 3345 501 to 1   tiling clone,   501/501
(100 %)
2 diff
(99.7 %id)
AI358328 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus CCDC144CandNOS2P3.h-u 2882 to 3306 428 to 4   tiling clone,   425/428
(99 %)
0 diff
(100 %id)
AI017609 pooled CCDC144CandNOS2P3.h-u 2885 to 3348 476 to 13   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 464/464
(100 %)
3 diff
(99.4 %id)
AI017517 pooled CCDC144CandNOS2P3.h-u 2887 to 3348 474 to 13   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 462/462
(100 %)
3 diff
(99.4 %id)
AW002810 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors CCDC144CandNOS2P3.h-u 2909 to 3305 424 to 28   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 397/397
(100 %)
4 diff
(99.0 %id)
AW664770 pooled CCDC144CandNOS2P3.h-u 2981 to 3304 328 to 4       325/328
(99 %)
0 diff
(100 %id)
AI538119.
matches multiple genes
poorly differentiated adenocarcinoma withsignet ring cell features, stomach CCDC144CandNOS2P3.h-u 3027 to 3349 325 to 3     also hits gene CCDC144AandFAM106C 323/325
(99 %)
0 diff
(100 %id)
BC019672 Brain, anaplastic oligodendroglioma with1p/19q loss CCDC144CandNOS2P3.i-u 1 to 1162 1 to 1162   available from MGC, AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 1162/1162
(100 %)
5 diff
(99.6 %id)
BG819822 anaplastic oligodendroglioma with 1p/19qloss, brain CCDC144CandNOS2P3.i-u 1 to 787 1 to 790 E12D A13S E14R E15G L16T ... available from MGC,   790/791
(99 %)
11 diff
(98.7 %id)
BC019615.
matches multiple genes
anaplastic oligodendroglioma with 1p/19qloss, brain, Brain, anaplastic oligodendroglioma with1p/19q loss CCDC144CandNOS2P3.i-u 1 to 1162 1 to 1162 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base), also hits gene RNF170 1162/1162
(100 %)
5 diff
(99.6 %id)
H22378.
matches multiple genes
brain CCDC144CandNOS2P3.i-u 32 to 403 15 to 387   tiling clone, also hits gene pyma 373/387
(96 %)
6 diff
(98.5 %id)
DB071222 testis CCDC144CandNOS2P3.j 1 to 502 2 to 503 Q5X tiling clone, capped   502/502
(100 %)
0 diff
(100 %id)
DA237424 brain CCDC144CandNOS2P3.j 460 to 1046 2 to 588   tiling clone, capped   587/587
(100 %)
0 diff
(100 %id)
DB067050 testis CCDC144CandNOS2P3.k 1 to 504 2 to 506   tiling clone, capped   505/505
(100 %)
2 diff
(99.7 %id)
DA289940 hippocampus CCDC144CandNOS2P3.k 411 to 1001 2 to 592 exact tiling clone, capped   591/591
(100 %)
1 diff
(99.9 %id)
DA105405 cerebellum CCDC144CandNOS2P3.l 1 to 571 2 to 572 exact tiling clone, capped   571/571
(100 %)
0 diff
(100 %id)
DA190820 amygdala CCDC144CandNOS2P3.l 342 to 939 2 to 599   tiling clone, capped   598/598
(100 %)
2 diff
(99.7 %id)
BX436969 thymus CCDC144CandNOS2P3.m-u 1 to 879 1 to 881 H77X H78X P79X tiling clone,   881/884
(99 %)
37 diff
(95.9 %id)
DB076449 testis CCDC144CandNOS2P3.m-u 265 to 828 2 to 565   capped   564/564
(100 %)
1 diff
(99.9 %id)
DA322843 hippocampus CCDC144CandNOS2P3.m-u 299 to 855 2 to 559   tiling clone, capped   558/560
(99 %)
2 diff
(99.7 %id)
DA101688 cerebellum CCDC144CandNOS2P3.n 1 to 547 2 to 549 S31N tiling clone, capped   548/548
(100 %)
2 diff
(99.7 %id)
DA125439 cerebellum CCDC144CandNOS2P3.n 239 to 833 2 to 596   tiling clone, capped   595/595
(100 %)
1 diff
(99.9 %id)
BI051077 placenta_normal CCDC144CandNOS2P3.n 347 to 705 1 to 359       359/359
(100 %)
7 diff
(98.1 %id)
BX282588.
matches multiple genes
heart CCDC144CandNOS2P3.o-u 1 to 357 1 to 358 exact tiling clone, also hits gene FAM106A 358/358
(100 %)
2 diff
(99.5 %id)
AI094310 heart CCDC144CandNOS2P3.o-u 280 to 732 453 to 1   tiling clone,   453/453
(100 %)
0 diff
(100 %id)
DA398915 thalamus CCDC144CandNOS2P3.p 1 to 577 2 to 578 exact tiling clone, capped   577/577
(100 %)
0 diff
(100 %id)
DA316462 hippocampus CCDC144CandNOS2P3.q 1 to 566 2 to 567 exact tiling clone, capped   566/566
(100 %)
0 diff
(100 %id)
DA093116 cerebellum CCDC144CandNOS2P3.r 1 to 564 2 to 566 exact tiling clone, capped   565/565
(100 %)
2 diff
(99.7 %id)
DB148319.
matches multiple genes
thymus CCDC144CandNOS2P3.s 1 to 549 2 to 550 exact tiling clone, capped also hits gene CCDC144AandFAM106C 549/549
(100 %)
3 diff
(99.5 %id)
DR001047 fetal brain CCDC144CandNOS2P3.t 1 to 538 12 to 551 exact tiling clone,   540/551
(98 %)
6 diff
(99.0 %id)
AV727074 hypothalamus CCDC144CandNOS2P3.u-u 1 to 490 1 to 490 exact tiling clone,   490/490
(100 %)
1 diff
(99.8 %id)
AK295707 hippocampus Gene CCDC144CandNOS2P3, variant not shown         This clone was ignored    
DB298616 cerebellum Gene CCDC144CandNOS2P3, variant not shown              
DA095054 cerebellum Gene CCDC144CandNOS2P3, variant not shown       capped      
DA190747 amygdala Gene CCDC144CandNOS2P3, variant not shown       capped      
DA321951 hippocampus Gene CCDC144CandNOS2P3, variant not shown       capped This clone was ignored    
DA321980 hippocampus Gene CCDC144CandNOS2P3, variant not shown       capped This clone was ignored    
DB312194 thalamus Gene CCDC144CandNOS2P3, variant not shown         This clone was ignored    
DA401604 thalamus Gene CCDC144CandNOS2P3, variant not shown       capped This clone was ignored    
AL705613 human skeletal muscle Gene CCDC144CandNOS2P3, variant not shown         This clone was ignored    
AI376654 pooled Gene CCDC144CandNOS2P3, variant not shown         This clone was ignored    
DB327010 brain Gene CCDC144CandNOS2P3, variant not shown         This clone was ignored    
DA802597 brain Gene CCDC144CandNOS2P3, variant not shown       capped This clone was ignored    
DB073804 testis Gene CCDC144CandNOS2P3, variant not shown       capped This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h-u, .i-u, .j, .k, .l, .m-u, .n, .o-u, .p, .q, .r, .s, .t, .u-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C