cDNA accession Links to the sequence |
Tissue most 5' clones in red |
Match mRNA |
From bp to bp in mRNA |
From bp to bp in accs. |
Clone encodes complete protein (with AA variation) |
Features | Anomalies detected by AceView |
Accession match over (% length) |
Base differences relative to genome (% identity) |
BF904499 | marrow | .b | 207 to 596 | 389 to 2 | S7P F54S S55Q S57A | Submitted on the opposite strand | 388/407 (95 %) | 2 diff (99.6 %id) | |
DA374979 | thalamus | .b | 1 to 556 | 2 to 557 | tiling clone, capped | 556/556 (100 %) | 0 diff (100 %id) | ||
CD387054 | embryonic trophoblasts, made from WA01 stemcells | .c | 930 to 1405 | 10 to 485 | AAA | 476/485 (98 %) | 7 diff (98.6 %id) | ||
CN371301 | embryonic stem cells, DMSO-treated H9 cellline | .e | 15 to 333 | 1 to 319 | 319/319 (100 %) | 0 diff (100 %id) | |||
CN371302 | embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells | .b | 52 to 555 | 16 to 519 | 504/524 (96 %) | 12 diff (97.8 %id) | |||
CR597240 | Placenta Cot 25-normalized | .c | 1 to 1466 | 1 to 1466 | exact | tiling clone, | 1466/1466 (100 %) | 0 diff (100 %id) | |
BX349023 | Placenta Cot 25-normalized | .c | 622 to 1517 | 1 to 896 | W189X | 896/935 (95 %) | 28 diff (97.1 %id) | ||
BX349063 | Placenta Cot 25-normalized | .c | 623 to 1361 | 1 to 734 | W163X A192P T193H P194L E195K ... | 734/775 (94 %) | 11 diff (98.6 %id) | ||
BX349064 | Placenta Cot 25-normalized | .c | 627 to 1315 | 1 to 689 | N6T S9A K10S L11W V12S ... | 689/738 (93 %) | 21 diff (97.2 %id) | ||
BX350274 | Placenta Cot 25-normalized | .c | 539 to 1466 | 935 to 1 | Y2S | 935/939 (99 %) | 26 diff (97.3 %id) | ||
BX399892 | Placenta Cot 25-normalized | .c | 1296 to 2098 | 804 to 1 | tiling clone, | 804/976 (82 %) | 20 diff (98.0 %id) | ||
BX399893 | Placenta Cot 25-normalized | .c | 1 to 991 | 1 to 971 | 971/1018 (95 %) | 37 diff (96.4 %id) | |||
DW417447 | Liver | .e | 31 to 319 | 18 to 306 | 289/306 (94 %) | 6 diff (98.1 %id) | |||
DW435571 | Liver | .e | 50 to 287 | 18 to 255 | 238/255 (93 %) | 6 diff (97.7 %id) | |||
DW438885 | Liver | .e | 75 to 309 | 10 to 244 | 235/244 (96 %) | 6 diff (97.6 %id) | |||
BE257517 | eye, retinoblastoma | .e | 10 to 577 | 1 to 568 | exact | tiling clone, | 568/568 (100 %) | 2 diff (99.7 %id) | |
BM083350 | eye, retinoblastoma | .e | -10 to 567 | 1 to 580 | H25X G26W C27L Y28L S29* | tiling clone, | 580/580 (100 %) | 5 diff (99.2 %id) | |
BE385351 | melanotic melanoma, skin | .b | 53 to 561 | 1 to 509 | 509/509 (100 %) | 1 diff (99.9 %id) | |||
BE386147 | melanotic melanoma, skin | .b | 53 to 648 | 1 to 595 | exact | 595/595 (100 %) | 2 diff (99.7 %id) | ||
BE409638 | choriocarcinoma, placenta | .b | 23 to 771 | 1 to 747 | exact | tiling clone, | 747/785 (95 %) | 24 diff (97.0 %id) | |
BF572469 | melanotic melanoma, high MDR, skin | .d | 1 to 754 | 1 to 755 | C9V L10C L11W E12R V13W ... | tiling clone, | 755/851 (88 %) | 46 diff (94.6 %id) | |
BI906044 | leukocyte | .b | 14 to 920 | 1 to 911 | L48S N49E I50Y L51S R52K ... | tiling clone, | 911/971 (93 %) | 30 diff (97.0 %id) | |
TI_57231477 | .b | 4 to 920 | 22 to 942 | L48S N49E I50Y L51S R52K ... | 921/1002 (91 %) | 35 diff (96.6 %id) | |||
DB106734 | thymus | .e | 103 to 463 | 2 to 362 | exact | tiling clone, capped | 361/573 (63 %) | 1 diff (99.9 %id) | |
DB129133 | thymus | .a | 1 to 560 | 2 to 561 | exact | tiling clone, capped | 560/560 (100 %) | 1 diff (99.9 %id) | |
AK097911. matches multiple genes | thymus | .d | 1 to 754 | 1 to 755 | tiling clone, available from FLJ, | This clone was ignored, also hits gene hoya | 755/851 (88 %) | 46 diff (94.6 %id) | |
AK097911. matches multiple genes | thymus | .d | 1 to 754 | 1 to 755 | tiling clone, available from FLJ, | This clone was ignored, also hits gene hoya | 755/851 (88 %) | 46 diff (94.6 %id) | |
BX115916 | liver and spleen | .b | 14 to 920 | 1 to 911 | tiling clone, | 911/971 (93 %) | 30 diff (97.0 %id) | ||
R95760 | liver and spleen | .b | 4 to 920 | 22 to 942 | 921/1002 (91 %) | 35 diff (96.6 %id) | |||
R95805 | liver and spleen | .e | 103 to 463 | 2 to 362 | tiling clone, | 361/573 (63 %) | 1 diff (99.9 %id) | ||
N63281 | multiple sclerosis lesions | .a | 1 to 560 | 2 to 561 | tiling clone, | Suspected internal deletion, this clone was ignored | 560/560 (100 %) | 1 diff (99.9 %id) | |
N90353 | multiple sclerosis lesions | Gene LOC286467, variant not shown | Suspected internal deletion, this clone was ignored | ||||||
BC131554. matches multiple genes | PCR rescued clones | Gene hoya, variant not shown | This clone was ignored, also hits gene hoya | ||||||
BC131554. matches multiple genes | PCR rescued clones | Gene LOC286467, variant not shown | This clone was ignored, also hits gene hoya | ||||||
NR_026975.1. matches multiple genes | Gene hoya, variant not shown | RefSeq, AAA | This clone was ignored, also hits gene hoya | ||||||
NR_026975.1. matches multiple genes | Gene LOC286467, variant not shown | RefSeq, AAA | This clone was ignored, also hits gene hoya | ||||||
DB108042. matches multiple genes | thymus | Gene hoya, variant not shown | capped | This clone was ignored, also hits gene hoya | |||||
DB108042. matches multiple genes | thymus | Gene LOC286467, variant not shown | capped | This clone was ignored, also hits gene hoya | |||||
DB343107. matches multiple genes | thymus | Gene hoya, variant not shown | This clone was ignored, also hits gene hoya | ||||||
DB343107. matches multiple genes | thymus | Gene LOC286467, variant not shown | This clone was ignored, also hits gene hoya | ||||||
DB163415 | thymus | Gene LOC286467, variant not shown | capped | ||||||
DB347008 | thymus | Gene LOC286467, variant not shown |
? | Gene Summary | Gene on genome | mRNA:.a, .b, .c, .d, .e | Alternative mRNAs features, proteins, introns, exons, sequences | Expression Tissue | Function, regulation, related genes C |