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Gene UBE2SP1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
107 supporting clones for gene UBE2SP1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BQ948306 epidermoid carcinoma, cell line, lung .a-u 1 to 595 1 to 597   tiling clone,   597/965
(61 %)
28 diff
(97.1 %id)
BU539271 adenocarcinoma, cell line, breast .a-u 18 to 593 1 to 588       588/1018
(57 %)
52 diff
(94.9 %id)
CA454573   .a-u 18 to 516 1 to 501   tiling clone,   501/1068
(46 %)
46 diff
(95.7 %id)
BM453936 melanotic melanoma, skin .a-u 21 to 597 1 to 580       580/931
(62 %)
23 diff
(97.6 %id)
BM477940 lymph, lymphoma, cell line .a-u 21 to 558 24 to 563       540/1206
(44 %)
41 diff
(96.7 %id)
BE883149.
matches multiple genes
leiomyosarcoma, uterus .a-u 22 to 448 1 to 443   tiling clone, also hits gene UBE2S 443/443
(100 %)
26 diff
(94.2 %id)
BM557456 amelanotic melanoma, cell line, skin .a-u 24 to 634 28 to 647   tiling clone,   620/1438
(43 %)
48 diff
(96.7 %id)
BG575445 breast, mammary adenocarcinoma, cell line .a-u 27 to 590 15 to 602   tiling clone,   588/763
(77 %)
9 diff
(98.9 %id)
AL562828.
matches multiple genes
brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .a-u 32 to 976 940 to 4 N2T S3X N4X V5T E6Y ...   also hits gene UBE2S 937/943
(99 %)
0 diff
(100 %id)
BQ424283 leiomyosarcoma, uterus .a-u 57 to 569 1 to 514       514/926
(55 %)
21 diff
(97.8 %id)
AA210923.
matches multiple genes
  .a-u 64 to 476 1 to 416     also hits gene UBE2S 416/430
(96 %)
14 diff
(96.8 %id)
BG683809.
matches multiple genes
brain, neuroblastoma, cell line .a-u 69 to 988 926 to 10 N2* tiling clone, also hits gene UBE2S 917/978
(93 %)
0 diff
(100 %id)
BX406619.
matches multiple genes
fetal liver, Liver .a-u 111 to 966 854 to 1 N2L S3Q N4R V5G K7P ... tiling clone, also hits gene UBE2S 854/854
(100 %)
11 diff
(98.8 %id)
BI090173 cervix .a-u 136 to 581 145 to 598       454/598
(75 %)
6 diff
(99.0 %id)
BQ229689 melanotic melanoma, skin .a-u 138 to 621 3 to 493       491/1060
(46 %)
6 diff
(99.5 %id)
H51344 brain .a-u 143 to 505 5 to 368       364/368
(98 %)
6 diff
(98.4 %id)
BG771609 testis .a-u 155 to 1020 1 to 863 K7N P86L tiling clone,   863/896
(96 %)
21 diff
(97.7 %id)
BE794214 lung, small cell carcinoma .a-u 159 to 874 1 to 710 K7N R117K S141Y A176E G187P ...     710/711
(99 %)
15 diff
(97.9 %id)
BC066948 testis .a-u 160 to 1004 1 to 845 K7N P86L tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 845/845
(100 %)
3 diff
(99.7 %id)
BF303849 muscle, rhabdomyosarcoma .a-u 174 to 675 198 to 697       500/702
(71 %)
12 diff
(98.3 %id)
TI_1948237958   .a-u 176 to 851 127 to 810   tiling clone,   684/1372
(49 %)
6 diff
(99.6 %id)
TI_1948207712   .a-u 183 to 858 796 to 121 N4T V5W E6R K7T L8C ...     676/1239
(54 %)
11 diff
(99.2 %id)
TI_1948207956   .a-u 183 to 764 136 to 718       583/1269
(45 %)
30 diff
(97.7 %id)
TI_1948207957   .a-u 183 to 794 136 to 750       615/1299
(47 %)
15 diff
(98.9 %id)
TI_1948208228   .a-u 183 to 756 130 to 708       579/1346
(43 %)
13 diff
(99.1 %id)
TI_1948208229   .a-u 183 to 851 140 to 817       678/1318
(51 %)
21 diff
(98.5 %id)
TI_1948208486   .a-u 183 to 739 132 to 685       554/1241
(44 %)
20 diff
(98.4 %id)
TI_1948208487   .a-u 183 to 791 134 to 746       613/1332
(46 %)
19 diff
(98.6 %id)
EL734182 mixed .a-u 184 to 844 1 to 661       661/661
(100 %)
4 diff
(99.4 %id)
AW250313 lung, small cell carcinoma .a-u 187 to 691 5 to 509   fully sequenced,   505/509
(99 %)
12 diff
(97.7 %id)
AW248281.
matches multiple genes
lung, small cell carcinoma .a-u 192 to 736 10 to 554     also hits gene UBE2S 545/554
(98 %)
6 diff
(99.0 %id)
BE622905 melanotic melanoma, skin .a-u 200 to 561 363 to 1       363/394
(92 %)
7 diff
(98.3 %id)
AL532359.
matches multiple genes
brain, fetal liver, Liver, neuroblastoma cells .a-u 208 to 944 738 to 1     also hits gene UBE2S 738/811
(90 %)
16 diff
(98.1 %id)
TI_1948237508   .a-u 209 to 858 766 to 117       650/1323
(49 %)
32 diff
(97.6 %id)
BE621419 epithelioid carcinoma, Pancreas .a-u 218 to 849 1 to 637   AAA   637/922
(69 %)
21 diff
(97.8 %id)
TI_1948208231   .a-u 227 to 858 755 to 121       635/1329
(47 %)
29 diff
(97.9 %id)
TI_1948237507   .a-u 227 to 858 753 to 119       635/1465
(43 %)
27 diff
(98.2 %id)
TI_1948207713   .a-u 247 to 858 735 to 119       617/1307
(47 %)
27 diff
(98.0 %id)
TI_1948237724   .a-u 260 to 858 719 to 116       604/1398
(43 %)
33 diff
(97.7 %id)
AL524941.
matches multiple genes
brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .a-u 261 to 941 679 to 1     also hits gene UBE2S 679/679
(100 %)
16 diff
(97.7 %id)
TI_1948208230   .a-u 292 to 858 696 to 120       577/1280
(45 %)
31 diff
(97.6 %id)
TI_1948207959   .a-u 305 to 858 678 to 116       563/1392
(40 %)
34 diff
(97.6 %id)
CN305221.
matches multiple genes
embryonic stem cells, cell lines H1, H7, andH9 .a-u 360 to 472 1 to 113     also hits gene UBE2S 113/113
(100 %)
0 diff
(100 %id)
TI_1948207958   .a-u 381 to 858 601 to 121       481/1181
(40 %)
35 diff
(97.1 %id)
AA829937 germinal center B cell .a-u 401 to 1004 650 to 51   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 600/602
(99 %)
8 diff
(98.7 %id)
AW273060.
matches multiple genes
colon, moderately-differentiated adenocarcinoma .a-u 422 to 1004 605 to 23   tiling clone, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base), also hits gene vama 583/584
(99 %)
40 diff
(93.2 %id)
W79220.
matches multiple genes
heart .a-u 424 to 848 1 to 426     also hits gene UBE2S 426/439
(97 %)
20 diff
(95.5 %id)
TI_1948237961   .a-u 429 to 858 546 to 117       430/450
(95 %)
14 diff
(96.9 %id)
AA582906 colon, colon tumor RER+ .a-u 441 to 1014 572 to 1       572/572
(100 %)
11 diff
(98.1 %id)
EC449599.
matches multiple genes
Prostate .a-u 460 to 547 1 to 89     also hits gene vama 89/89
(100 %)
2 diff
(97.8 %id)
H73020.
matches multiple genes
liver and spleen .a-u 460 to 843 1 to 390   tiling clone, fully sequenced, also hits gene vama 390/390
(100 %)
24 diff
(93.9 %id)
AA594105.
matches multiple genes
colon, colon tumor RER+ .a-u 466 to 1004 559 to 23   tiling clone, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base), also hits gene vama 537/537
(100 %)
19 diff
(96.5 %id)
AA426470 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a-u 491 to 613 1 to 121       121/198
(61 %)
3 diff
(98.5 %id)
AI038859   .a-u 495 to 1017 552 to 31   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 522/537
(97 %)
0 diff
(100 %id)
AA938955.
matches multiple genes
pooled .a-u 503 to 1013 511 to 1     also hits gene UBE2S, vama 511/512
(99 %)
8 diff
(98.5 %id)
AW170665 bowel (skin primary), metastatic melanoma to bowel .a-u 505 to 1017 513 to 1       513/513
(100 %)
20 diff
(96.2 %id)
AA918328 pooled .a-u 513 to 1004 511 to 21   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 491/493
(99 %)
28 diff
(94.4 %id)
AW732128.
matches multiple genes
lung, small cell carcinoma .a-u 520 to 1016 497 to 1     also hits gene vama 497/497
(100 %)
25 diff
(95.0 %id)
AI015067.
matches multiple genes
  .a-u 523 to 1017 495 to 1   tiling clone, also hits gene vama 495/495
(100 %)
60 diff
(87.9 %id)
AA211097.
matches multiple genes
  .a-u 534 to 1011 476 to 1     also hits gene UBE2S 476/478
(99 %)
5 diff
(99.0 %id)
AA826730.
matches multiple genes
invasive tumor (cell line), Prostate .a-u 538 to 1014 479 to 1     also hits gene vama 479/479
(100 %)
30 diff
(93.8 %id)
BE301331.
matches multiple genes
Kidney, renal cell adenocarcinoma .a-u 556 to 844 292 to 4     also hits gene vama 289/292
(98 %)
0 diff
(100 %id)
AI566244 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .a-u 571 to 1013 443 to 1       443/443
(100 %)
5 diff
(98.9 %id)
AA991461 breast .a-u 646 to 1004 375 to 20   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 356/356
(100 %)
16 diff
(95.6 %id)
AW250988 lung, small cell carcinoma .a-u 661 to 1014 354 to 1   fully sequenced,   354/354
(100 %)
5 diff
(98.6 %id)
AA969243 pooled .a-u 662 to 1014 351 to 1       351/351
(100 %)
10 diff
(97.2 %id)
AW089131.
matches multiple genes
brain, tumor, 5 pooled (see description) .a-u 675 to 1004 352 to 21   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base), also hits gene vama 332/334
(99 %)
19 diff
(94.4 %id)
BE044549 pooled .a-u 728 to 1017 290 to 1       290/290
(100 %)
5 diff
(98.3 %id)
EC566069.
matches multiple genes
Prostate .a-u 739 to 838 21 to 121     also hits gene vama 101/121
(83 %)
6 diff
(95.1 %id)
AW797850.
matches multiple genes
uterus .a-u 740 to 886 21 to 167   tiling clone, also hits gene vama 147/170
(86 %)
3 diff
(98.3 %id)
AA496372.
matches multiple genes
ovarian tumor, ovary .a-u 760 to 923 37 to 200     Submitted on the opposite strand, also hits gene UBE2S 164/200
(82 %)
6 diff
(97.0 %id)
AA464729.
matches multiple genes
ovarian tumor, ovary .a-u 760 to 923 37 to 199     Submitted on the opposite strand, also hits gene UBE2S 163/199
(81 %)
6 diff
(97.0 %id)
BU176894 melanotic melanoma, skin .a-u 760 to 1004 1 to 244   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 244/244
(100 %)
2 diff
(99.2 %id)
H77912.
matches multiple genes
liver and spleen .a-u 776 to 832 57 to 1   fully sequenced, also hits gene vama 57/57
(100 %)
3 diff
(94.8 %id)
T29587.
matches multiple genes
lung .a-u 776 to 1004 1 to 229     also hits gene UBE2S 229/229
(100 %)
0 diff
(100 %id)
AW956171.
matches multiple genes
  .a-u 777 to 1004 1 to 228   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base), also hits gene UBE2S 228/228
(100 %)
0 diff
(100 %id)
BQ226584.
matches multiple genes
epithelioid carcinoma, Pancreas .a-u 777 to 1004 1 to 228   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base), also hits gene UBE2S 228/228
(100 %)
0 diff
(100 %id)
BE537716 cervix .a-u 784 to 1008 1 to 225       225/225
(100 %)
2 diff
(99.2 %id)
AI054057 ovary, papillary serous carcinoma .a-u 806 to 1002 215 to 21   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 195/199
(97 %)
0 diff
(100 %id)
AA876186.
matches multiple genes
pooled germ cell tumors .a-u 814 to 1004 229 to 40   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base), also hits gene UBE2S 190/190
(100 %)
1 diff
(99.5 %id)
BE857822.
matches multiple genes
ovary, papillary serous carcinoma .a-u 824 to 1002 1 to 179     also hits gene UBE2S 179/182
(98 %)
7 diff
(96.2 %id)
CR748236.
matches multiple genes
breast, breast carcinoma in situ .a-u 827 to 1017 19 to 209   tiling clone, also hits gene vama 191/211
(90 %)
3 diff
(98.6 %id)
AI054060 ovary, papillary serous carcinoma .a-u 827 to 1004 197 to 20   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 178/198
(89 %)
1 diff
(99.5 %id)
AI053722.
matches multiple genes
ovary, papillary serous carcinoma .a-u 827 to 1002 197 to 22   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base), also hits gene UBE2S 176/198
(88 %)
0 diff
(100 %id)
AI054079.
matches multiple genes
ovary, papillary serous carcinoma .a-u 827 to 998 193 to 22   AAA Possibly primed on the genome, locally A rich (17/19 A in genome downstream of last aligned base), also hits gene UBE2S, vama 172/192
(89 %)
4 diff
(98.0 %id)
AI252868 ovary, papillary serous carcinoma .a-u 827 to 1002 12 to 187   AAA Submitted on the opposite strand 176/189
(93 %)
2 diff
(99.0 %id)
AI255068 ovary, papillary serous carcinoma .a-u 827 to 1004 12 to 189   AAA Submitted on the opposite strand 178/190
(93 %)
2 diff
(99.0 %id)
AI254494.
matches multiple genes
ovary, papillary serous carcinoma .a-u 827 to 996 23 to 192     Submitted on the opposite strand, also hits gene UBE2S 170/192
(88 %)
6 diff
(96.9 %id)
AI251264 ovary, papillary serous carcinoma .a-u 827 to 1041 12 to 223     Submitted on the opposite strand 212/224
(94 %)
12 diff
(94.7 %id)
AI252839 ovary, papillary serous carcinoma .a-u 827 to 1002 12 to 187   AAA Submitted on the opposite strand 176/189
(93 %)
2 diff
(99.0 %id)
AI254764 ovary, papillary serous carcinoma .a-u 827 to 1033 12 to 216   tiling clone, Submitted on the opposite strand 205/225
(91 %)
10 diff
(95.6 %id)
AI305762 borderline ovarian carcinoma, ovary .a-u 827 to 1033 12 to 216     Submitted on the opposite strand 205/225
(91 %)
10 diff
(95.6 %id)
AI312145 bone marrow, stem cell 34+/38+ .a-u 827 to 1004 13 to 190   AAA Submitted on the opposite strand 178/191
(93 %)
2 diff
(99.0 %id)
AI345036.
matches multiple genes
invasive adenocarcinoma, lung .a-u 827 to 1004 12 to 189   AAA Submitted on the opposite strand, also hits gene UBE2S 178/189
(94 %)
6 diff
(96.9 %id)
AI307478 bone marrow, stem cell 34+/38+ .a-u 827 to 1002 12 to 187   AAA Submitted on the opposite strand 176/189
(93 %)
2 diff
(99.0 %id)
AI802853.
matches multiple genes
bone marrow, CD34+, CD38- from normal bone marrow donor .a-u 827 to 1004 12 to 189   AAA Submitted on the opposite strand, also hits gene UBE2S 178/189
(94 %)
6 diff
(96.9 %id)
AI802854.
matches multiple genes
bone marrow, CD34+, CD38- from normal bone marrow donor .a-u 827 to 1004 12 to 189   AAA Submitted on the opposite strand, also hits gene UBE2S 178/189
(94 %)
6 diff
(96.9 %id)
AI610913 bone marrow, CD34+, CD38- from normal bone marrow donor .a-u 827 to 1033 12 to 217     Submitted on the opposite strand 206/226
(91 %)
10 diff
(95.6 %id)
AW072496 bone marrow, stem cell 34+/38+ .a-u 827 to 1033 12 to 217   tiling clone, Submitted on the opposite strand 206/226
(91 %)
8 diff
(96.5 %id)
AW073433 bone marrow, stem cell 34+/38+ .a-u 827 to 1004 12 to 189   AAA Submitted on the opposite strand 178/190
(93 %)
2 diff
(99.0 %id)
AW073469 bone marrow, stem cell 34+/38+ .a-u 827 to 1033 12 to 217     Submitted on the opposite strand 206/226
(91 %)
9 diff
(96.1 %id)
AW073656.
matches multiple genes
bone marrow, stem cell 34+/38+ .a-u 827 to 1004 12 to 189   AAA Submitted on the opposite strand, also hits gene UBE2S 178/189
(94 %)
6 diff
(96.9 %id)
AW071289 bone marrow, stem cell 34+/38+ .a-u 827 to 1003 12 to 188   AAA Submitted on the opposite strand 177/189
(93 %)
2 diff
(99.0 %id)
AW071420 bone marrow, stem cell 34+/38+ .a-u 827 to 1033 12 to 217     Submitted on the opposite strand 206/226
(91 %)
9 diff
(96.1 %id)
AW075100.
matches multiple genes
bone marrow, stem cell 34+/38+ .a-u 827 to 1004 12 to 189   AAA Submitted on the opposite strand, also hits gene UBE2S 178/189
(94 %)
6 diff
(96.9 %id)
T90849.
matches multiple genes
liver and spleen .a-u 829 to 986 157 to 1     also hits gene UBE2S 157/157
(100 %)
2 diff
(98.8 %id)
BF718645 epidermis, foreskin .a-u 834 to 1002 171 to 3       169/171
(98 %)
0 diff
(100 %id)
BF718773.
matches multiple genes
epidermis, foreskin .a-u 834 to 1004 171 to 1     also hits gene UBE2S 171/171
(100 %)
0 diff
(100 %id)
AI565286.
matches multiple genes
pooled .a-u 868 to 1004 138 to 1     also hits gene UBE2S 138/138
(100 %)
1 diff
(99.3 %id)
EC476503.
matches multiple genes
Prostate .a-u 886 to 1003 1 to 114     also hits gene UBE2S 114/120
(95 %)
7 diff
(94.2 %id)
? Gene Summary Gene on genome mRNA Expression Tissue Function, regulation, related genes C