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Gene C3orf55TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
80 supporting clones for gene C3orf55 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_001130002.1   .a 1 to 1511 1 to 1511 exact RefSeq,   1511/1511
(100 %)
0 diff
(100 %id)
TI_1520873615   .a 8 to 470 484 to 19   tiling clone,   466/1161
(40 %)
0 diff
(100 %id)
TI_57218517   .a 11 to 778 15 to 781 exact tiling clone,   767/782
(98 %)
8 diff
(99.0 %id)
BC029129 Brain, adult, 6 pooled whole brains .a 28 to 1508 1 to 1479 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (13/14 A in genome downstream of last aligned base) 1479/1479
(100 %)
3 diff
(99.8 %id)
BI754395 brain .a 28 to 778 1 to 751 exact available from MGC,   751/752
(99 %)
2 diff
(99.8 %id)
BG199132   .a 141 to 316 1 to 176       176/176
(100 %)
0 diff
(100 %id)
BG200087   .a 158 to 1003 24 to 871 K2X V3K V4S G5W N6E ...     848/871
(97 %)
10 diff
(98.9 %id)
BG208763   .a 469 to 1255 45 to 832       788/832
(94 %)
6 diff
(99.3 %id)
BG202109   .a 473 to 939 54 to 524   tiling clone,   471/867
(54 %)
21 diff
(97.6 %id)
BG214670   .a 473 to 1036 54 to 622       569/875
(65 %)
38 diff
(95.7 %id)
BG210452   .a 474 to 1061 15 to 601       587/917
(64 %)
17 diff
(98.2 %id)
BG189274   .a 478 to 735 49 to 302       254/302
(84 %)
6 diff
(98.1 %id)
BG182468   .a 484 to 711 68 to 296       229/296
(77 %)
6 diff
(98.0 %id)
BG213072   .a 484 to 768 65 to 349       285/349
(81 %)
6 diff
(98.3 %id)
BG205773   .a 489 to 969 1 to 480       480/810
(59 %)
14 diff
(98.3 %id)
BG181950   .a 511 to 693 1 to 182       182/182
(100 %)
1 diff
(99.5 %id)
BG207896   .a 511 to 1230 1 to 723       723/762
(94 %)
59 diff
(92.3 %id)
BG193455   .a 512 to 1231 1 to 717   tiling clone,   717/720
(99 %)
49 diff
(93.2 %id)
BG203669   .a 514 to 1267 4 to 746       743/748
(99 %)
58 diff
(92.3 %id)
BG217876   .a 514 to 709 3 to 198       196/198
(98 %)
6 diff
(97.0 %id)
BG200088   .a 593 to 1370 786 to 19     Submitted on the opposite strand 768/804
(95 %)
0 diff
(100 %id)
BG216276   .a 602 to 1364 771 to 15     Submitted on the opposite strand 757/809
(93 %)
0 diff
(100 %id)
BG197465   .a 606 to 1358 775 to 32     Submitted on the opposite strand 744/872
(85 %)
46 diff
(94.8 %id)
BG209920   .a 642 to 1368 732 to 17   AAA Submitted on the opposite strand 716/795
(90 %)
0 diff
(100 %id)
BG199024   .a 802 to 1518 746 to 40     Submitted on the opposite strand 707/859
(82 %)
0 diff
(100 %id)
BG187165   .a 803 to 1349 609 to 70     Submitted on the opposite strand 540/901
(59 %)
0 diff
(100 %id)
BE327082 carcinoid, lung .a 885 to 1367 485 to 5   tiling clone,   481/491
(97 %)
0 diff
(100 %id)
BG195465   .a 1042 to 1358 347 to 31     Submitted on the opposite strand 317/347
(91 %)
9 diff
(97.5 %id)
BG189863   .a 1092 to 1368 293 to 17     Submitted on the opposite strand 277/293
(94 %)
0 diff
(100 %id)
BG184557   .a 1185 to 1517 383 to 51     Submitted on the opposite strand 333/383
(86 %)
0 diff
(100 %id)
NM_001130001.1   .b 1 to 1422 1 to 1422 exact RefSeq,   1422/1422
(100 %)
0 diff
(100 %id)
BC010062 Skin, melanotic melanoma. .b 75 to 1271 1 to 1195 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (13/14 A in genome downstream of last aligned base) 1195/1195
(100 %)
3 diff
(99.8 %id)
BF026806 melanotic melanoma, skin .b 95 to 820 1 to 725 exact available from MGC,   725/735
(98 %)
5 diff
(99.4 %id)
CD245077 White Matter .c 1 to 785 1 to 787 exact tiling clone,   787/851
(92 %)
7 diff
(99.2 %id)
BF032046 hypernephroma, Kidney .c 91 to 743 1 to 652 R38K V39S D40G E41*     652/887
(73 %)
31 diff
(96.6 %id)
NM_001099777.2   .c 130 to 1206 1 to 1077 exact RefSeq,   1077/1077
(100 %)
0 diff
(100 %id)
BC126187 Pooled, cerebellum, kidney, placenta,testis, lung, colon, liver, heart, thyroid, bladder,uterus, PCR rescued clones .c 137 to 1075 1 to 937 exact     937/937
(100 %)
1 diff
(99.9 %id)
BC126189 Pooled, cerebellum, kidney, placenta,testis, lung, colon, liver, heart, thyroid, bladder,uterus, PCR rescued clones .c 137 to 1075 1 to 939 exact     939/939
(100 %)
3 diff
(99.7 %id)
TI_1520874225   .c 137 to 1075 52 to 989 exact     938/1245
(75 %)
10 diff
(99.2 %id)
TI_1520875467   .c 137 to 1074 54 to 993 exact     940/1211
(77 %)
11 diff
(99.1 %id)
TI_1520874227   .c 137 to 1076 994 to 55 exact   Submitted on the opposite strand 940/1233
(76 %)
3 diff
(99.8 %id)
BG197083   .c 258 to 1051 26 to 812 exact     787/825
(95 %)
40 diff
(95.2 %id)
BG184770   .c 270 to 652 1 to 383       383/383
(100 %)
0 diff
(100 %id)
BG215351   .c 270 to 1040 1 to 769 C114R AAA Possibly primed on the genome, locally A rich (13/14 A in genome downstream of last aligned base) 769/769
(100 %)
15 diff
(98.1 %id)
BG220009   .c 270 to 1082 1 to 809 exact tiling clone,   809/819
(98 %)
14 diff
(98.3 %id)
BG999138 head_neck .c 325 to 802 478 to 1       478/480
(99 %)
8 diff
(98.4 %id)
BQ354083 head_neck .c 325 to 811 490 to 5       486/492
(98 %)
10 diff
(98.0 %id)
BQ355809 head_neck .c 389 to 813 426 to 6       421/426
(98 %)
0 diff
(100 %id)
BG209594   .c 597 to 1212 1 to 612   AAA Possibly primed on the genome, locally A rich (13/14 A in genome downstream of last aligned base) 612/615
(99 %)
32 diff
(94.8 %id)
TI_1520876913   .c 691 to 1075 8 to 391       384/684
(56 %)
4 diff
(99.5 %id)
AW151487 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .c 893 to 1206 319 to 6   tiling clone,   314/319
(98 %)
0 diff
(100 %id)
TI_2194645452   .d 1 to 850 46 to 894 exact     849/1249
(67 %)
9 diff
(99.3 %id)
TI_2194645833   .d 1 to 850 919 to 71 exact tiling clone,   849/1249
(67 %)
0 diff
(100 %id)
TI_2194646127   .d 1 to 587 52 to 636 exact     585/636
(91 %)
15 diff
(97.7 %id)
TI_2194646129   .d 1 to 850 924 to 76 Y34L R35Q N36K G37W R38K ...     849/1284
(66 %)
5 diff
(99.7 %id)
BC144066 Pooled, cerebellum, kidney, placenta,testis, lung, colon, liver, heart, thyroid, bladder,uterus, PCR rescued clones .d 1 to 850 1 to 849 exact tiling clone,   849/849
(100 %)
2 diff
(99.8 %id)
BG217991   .d 134 to 932 1 to 794 exact tiling clone,   794/794
(100 %)
11 diff
(98.7 %id)
BG218414   .d 143 to 758 1 to 620 T57S     620/825
(75 %)
39 diff
(95.3 %id)
BE905784 epithelioid carcinoma, Pancreas .e 1 to 738 1 to 737 exact tiling clone,   737/801
(92 %)
10 diff
(98.8 %id)
AA131625 uterus .e 25 to 539 1 to 516       516/516
(100 %)
8 diff
(98.5 %id)
NR_024016.1   .e 27 to 872 1 to 846   RefSeq,   846/846
(100 %)
0 diff
(100 %id)
BX113701 uterus .e 30 to 714 1 to 685       685/685
(100 %)
1 diff
(99.9 %id)
BM709511 eye, optic nerve .e 42 to 634 1 to 593       593/593
(100 %)
0 diff
(100 %id)
BM716256 eye, optic nerve .e 42 to 500 1 to 459       459/459
(100 %)
0 diff
(100 %id)
AI348631 carcinoid, lung .e 45 to 457 1 to 413     Submitted on the opposite strand 413/413
(100 %)
0 diff
(100 %id)
BG194964   .e 167 to 861 705 to 11     Submitted on the opposite strand 695/705
(98 %)
3 diff
(99.6 %id)
BG197365   .e 167 to 780 1 to 614       614/820
(74 %)
16 diff
(98.1 %id)
BG200482   .e 167 to 857 1 to 680       680/792
(85 %)
37 diff
(95.4 %id)
BG216078   .e 167 to 869 705 to 3     Submitted on the opposite strand 703/705
(99 %)
5 diff
(99.3 %id)
BG218311   .e 170 to 861 703 to 11     Submitted on the opposite strand 693/708
(97 %)
10 diff
(98.6 %id)
BG206730   .e 274 to 848 1 to 577       577/823
(70 %)
13 diff
(98.5 %id)
BG183394   .e 278 to 860 626 to 44     Submitted on the opposite strand 583/626
(93 %)
0 diff
(100 %id)
BG210905   .e 280 to 860 620 to 43     Submitted on the opposite strand 578/621
(93 %)
0 diff
(100 %id)
BU733510 eye, optic nerve .e 283 to 871 607 to 19   AAA   589/589
(100 %)
1 diff
(99.9 %id)
BF512162   .e 406 to 871 483 to 18   AAA   466/466
(100 %)
2 diff
(99.6 %id)
AI377021   .e 443 to 883 444 to 4   tiling clone,   441/444
(99 %)
0 diff
(100 %id)
BF446272 Prostate .e 443 to 872 434 to 5       430/434
(99 %)
0 diff
(100 %id)
AA131576 uterus .e 580 to 871 313 to 21   AAA   293/293
(100 %)
2 diff
(99.4 %id)
TI_154038829   .f 1 to 775 845 to 80 exact tiling clone, AAA Possibly primed on the genome, locally A rich (13/14 A in genome downstream of last aligned base) 766/785
(97 %)
21 diff
(97.4 %id)
CA444904 lung, Metastatic Chondrosarcoma .f 216 to 775 576 to 17 exact AAA Possibly primed on the genome, locally A rich (13/14 A in genome downstream of last aligned base) 560/560
(100 %)
0 diff
(100 %id)
BF541113 hypernephroma, Kidney .g 1 to 615 1 to 613 exact tiling clone,   613/845
(72 %)
19 diff
(97.8 %id)
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C