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Gene NHEDC1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
92 supporting clones for gene NHEDC1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_139173.3   .a 1 to 1879 1 to 1879 Q33H RefSeq,   1879/1879
(100 %)
1 diff
(100.0 %id)
AF447585 testis .a 21 to 1705 1 to 1682 Q33H F219L V220F L221*     1682/1687
(99 %)
5 diff
(99.8 %id)
DQ003059 testis .a 21 to 1879 1 to 1859 Q33H tiling clone,   1859/1859
(100 %)
1 diff
(100.0 %id)
DB023624 testis .a 59 to 602 2 to 545   capped   544/544
(100 %)
1 diff
(99.9 %id)
BC132712 Pooled, cerebellum, kidney, placenta,testis, lung, colon, liver, heart, thyroid, bladder,uterus, PCR rescued clones .a 74 to 1719 1 to 1646 Q33H     1646/1646
(100 %)
1 diff
(100.0 %id)
BC136966 Testicle, PCR rescued clones .a 74 to 1719 1 to 1646 Q33H     1646/1646
(100 %)
1 diff
(100.0 %id)
BC110794 Brain, adult medulla .a 117 to 1707 1 to 1591 Q33H AAA   1591/1591
(100 %)
1 diff
(100.0 %id)
TI_1971554561   .a 634 to 1720 1151 to 70       1084/1285
(84 %)
12 diff
(99.1 %id)
BI520258 brain, medulla .a 733 to 1259 1 to 524   fully sequenced,   524/524
(100 %)
2 diff
(99.7 %id)
TI_43963115   .a 733 to 1259 70 to 593   fully sequenced,   524/593
(88 %)
8 diff
(98.7 %id)
TI_1971555619   .a 786 to 1720 1069 to 139       931/1256
(74 %)
8 diff
(99.4 %id)
TI_1971555735   .a 787 to 1720 1076 to 144       933/1280
(72 %)
8 diff
(99.4 %id)
DR008100 pooled .a 889 to 1591 704 to 1     Submitted on the opposite strand 704/704
(100 %)
1 diff
(99.9 %id)
TI_837040652   .a 893 to 1626 1 to 731   fully sequenced,   731/731
(100 %)
10 diff
(98.7 %id)
DR008099 pooled .a 920 to 1606 1 to 688       688/688
(100 %)
1 diff
(99.9 %id)
TI_837040653   .a 941 to 1603 663 to 2   fully sequenced,   662/663
(99 %)
0 diff
(100 %id)
DB336230 testis .a 1169 to 1707 540 to 1       540/540
(100 %)
2 diff
(99.7 %id)
BI520967 brain, medulla .a 1198 to 1629 452 to 20   fully sequenced,   433/452
(95 %)
0 diff
(100 %id)
TI_43963116   .a 1198 to 1629 452 to 20   fully sequenced,   433/452
(95 %)
0 diff
(100 %id)
TI_1971555621   .a 1227 to 1720 627 to 137       491/1184
(41 %)
36 diff
(97.0 %id)
DB507067 testis .a 1245 to 1704 1 to 460   AAA Submitted on the opposite strand 460/460
(100 %)
2 diff
(99.6 %id)
DB532139 hippocampus .a 1273 to 1702 1 to 430     Submitted on the opposite strand 430/432
(99 %)
3 diff
(99.4 %id)
DB534815 hippocampus .a 1298 to 1707 1 to 411     Submitted on the opposite strand 411/411
(100 %)
3 diff
(99.3 %id)
AW135265   .a 1333 to 1704 389 to 18   AAA   372/378
(98 %)
2 diff
(99.5 %id)
AI963884 pooled germ cell tumors .a 1366 to 1705 345 to 6       340/345
(98 %)
0 diff
(100 %id)
AI797613 pooled .a 1406 to 1879 475 to 2       474/478
(99 %)
0 diff
(100 %id)
DB519938 testis .a 1440 to 1877 1 to 438     Submitted on the opposite strand 438/438
(100 %)
0 diff
(100 %id)
DB536699 hippocampus .a 1473 to 1876 1 to 404     Submitted on the opposite strand 404/405
(99 %)
1 diff
(99.8 %id)
DB447350 testis .b 1 to 430 1 to 431   tiling clone,   431/431
(100 %)
5 diff
(98.9 %id)
NM_001100874.2   .b 1 to 1755 1 to 1755 Q33H RefSeq,   1755/1755
(100 %)
1 diff
(100.0 %id)
BI464129 testis .b 16 to 788 1 to 777       777/941
(82 %)
18 diff
(98.1 %id)
BI463663 testis .b 16 to 857 1 to 845   tiling clone,   845/846
(99 %)
19 diff
(97.8 %id)
DB033162 testis .b 28 to 598 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
DB108037 thymus .b 28 to 488 2 to 465   capped   464/464
(100 %)
7 diff
(98.5 %id)
BI547235 brain, hippocampus .b 30 to 853 1 to 827       827/833
(99 %)
19 diff
(97.8 %id)
TI_44167918   .b 32 to 853 84 to 908       825/914
(90 %)
23 diff
(97.5 %id)
AY461581   .b 53 to 1742 1 to 1690 Q33H I292T tiling clone, AAA   1690/1690
(100 %)
4 diff
(99.8 %id)
TI_57171480   .b 55 to 882 63 to 887       825/891
(92 %)
15 diff
(98.4 %id)
DB451717 testis .b 61 to 554 1 to 494       494/495
(99 %)
3 diff
(99.4 %id)
BI827585 brain, medulla .b 62 to 882 1 to 818       818/822
(99 %)
11 diff
(98.7 %id)
DB465459 hippocampus .b 63 to 485 1 to 421       421/421
(100 %)
8 diff
(98.1 %id)
AK313592 testis .b 74 to 801 1 to 728       728/732
(99 %)
6 diff
(99.2 %id)
TI_1971554833   .b 74 to 780 707 to 3       705/1266
(55 %)
1 diff
(100.0 %id)
TI_1752770532   .b 74 to 435 365 to 6       360/1261
(28 %)
1 diff
(100.0 %id)
TI_1752770534   .b 74 to 780 709 to 4       706/1274
(55 %)
1 diff
(100.0 %id)
DB023768 testis .b 74 to 615 2 to 544   capped   543/543
(100 %)
2 diff
(99.7 %id)
DB027683 testis .b 75 to 662 2 to 591   capped   590/590
(100 %)
4 diff
(99.4 %id)
DB055687 testis .b 83 to 622 2 to 543   capped   542/542
(100 %)
3 diff
(99.5 %id)
BI465091 testis .b 84 to 754 1 to 670       670/1036
(64 %)
26 diff
(97.5 %id)
DB467742 hippocampus .b 86 to 508 1 to 424       424/424
(100 %)
3 diff
(99.3 %id)
DB028493 testis .b 89 to 630 2 to 543   capped   542/542
(100 %)
2 diff
(99.7 %id)
DB460598 testis .b 90 to 573 1 to 484       484/484
(100 %)
2 diff
(99.6 %id)
DB044124 testis .b 90 to 657 2 to 570   capped   569/569
(100 %)
3 diff
(99.5 %id)
DB449452 testis .b 91 to 520 1 to 430       430/430
(100 %)
2 diff
(99.6 %id)
DB469196 hippocampus .b 99 to 402 1 to 303       305/333
(91 %)
7 diff
(97.9 %id)
BI826222 brain, medulla .b 109 to 919 1 to 811       811/812
(99 %)
4 diff
(99.6 %id)
BI832102 brain, medulla .b 133 to 886 58 to 810       753/810
(92 %)
13 diff
(98.4 %id)
BM908201 brain, medulla .b 133 to 1083 35 to 987       958/1056
(90 %)
18 diff
(98.3 %id)
TI_57173301   .b 133 to 919 98 to 884       787/885
(88 %)
10 diff
(98.9 %id)
TI_57174708   .b 133 to 886 58 to 810       753/810
(92 %)
13 diff
(98.4 %id)
BP369707 testis .b 158 to 673 1 to 512       512/571
(89 %)
36 diff
(93.7 %id)
AA393779   .b 744 to 1195 1 to 451       451/451
(100 %)
2 diff
(99.6 %id)
BG188838.
matches multiple genes
  .b 805 to 1146 23 to 366   tiling clone, also hits gene LOC644768, NHEDC1P2 344/370
(92 %)
14 diff
(96.3 %id)
TI_1948073305   .b 966 to 1474 648 to 133       516/1278
(40 %)
30 diff
(97.7 %id)
CA774595 Pancreas, Purified pancreatic islet .b 1010 to 1472 463 to 1   tiling clone,   463/463
(100 %)
3 diff
(99.4 %id)
DB526857 testis .b 1306 to 1755 1 to 448     Submitted on the opposite strand 448/448
(100 %)
1 diff
(99.8 %id)
DB514470 testis .b 1332 to 1751 2 to 429   AAA Submitted on the opposite strand 437/429
(101 %)
61 diff
(85.8 %id)
DB526003 testis .b 1336 to 1755 1 to 418     Submitted on the opposite strand 418/418
(100 %)
1 diff
(99.8 %id)
AI992090 pooled germ cell tumors .b 1393 to 1745 353 to 1       353/353
(100 %)
9 diff
(97.5 %id)
DB512294 testis .b 1410 to 1751 1 to 340     Submitted on the opposite strand 340/340
(100 %)
5 diff
(98.6 %id)
TI_1971554807   .c 1 to 726 243 to 968   tiling clone, Submitted on the opposite strand 726/1314
(55 %)
7 diff
(99.5 %id)
DB517207 testis .c 650 to 1100 1 to 449   tiling clone, Submitted on the opposite strand 449/449
(100 %)
1 diff
(99.8 %id)
TI_2194694791   .d 1 to 1185 53 to 1221 A214L T215Q V216Y Q217S A218C ...     1169/1292
(90 %)
16 diff
(98.8 %id)
TI_2194699306   .d 1 to 1137 48 to 1176       1129/1295
(87 %)
21 diff
(98.4 %id)
BC144443 Pooled, cerebellum, kidney, placenta,testis, lung, colon, liver, heart, thyroid, bladder,uterus, PCR rescued clones .d 1 to 1184 1 to 1184 exact tiling clone,   1184/1184
(100 %)
0 diff
(100 %id)
TI_2194694805   .d 135 to 1186 1120 to 73 exact tiling clone,   1048/1271
(82 %)
8 diff
(99.4 %id)
TI_2194699686   .d 135 to 1186 1120 to 68 exact     1053/1299
(81 %)
3 diff
(99.8 %id)
BC046636 testis .e 1 to 1547 1 to 1545 exact tiling clone, available from MGC, AAA   1545/1545
(100 %)
6 diff
(99.7 %id)
BI561066 testis .e 1 to 769 1 to 771   available from MGC,   771/778
(99 %)
8 diff
(99.0 %id)
TI_44349301   .e 3 to 769 85 to 853       769/860
(89 %)
14 diff
(98.4 %id)
BC022079 testis .f 1 to 1397 5 to 1399 exact tiling clone, available from MGC, AAA   1399/1399
(100 %)
6 diff
(99.6 %id)
BG723283 testis .f 1 to 808 5 to 813   available from MGC,   813/814
(99 %)
16 diff
(98.1 %id)
TI_1948072488   .f 415 to 825 131 to 541       411/1020
(40 %)
12 diff
(98.9 %id)
TI_1948073037   .f 415 to 929 126 to 642       517/1032
(50 %)
18 diff
(98.3 %id)
TI_1948073038   .f 415 to 724 135 to 444       310/339
(91 %)
8 diff
(97.7 %id)
TI_1948073304   .f 415 to 1065 136 to 790       655/1364
(48 %)
15 diff
(99.0 %id)
CV024404 mixed .f 416 to 1054 1 to 639       639/639
(100 %)
0 diff
(100 %id)
TI_1948073039   .f 424 to 1075 772 to 121       652/1358
(48 %)
21 diff
(98.5 %id)
BQ441291 testis .g 1 to 745 1 to 748   tiling clone,   748/753
(99 %)
14 diff
(98.2 %id)
AI027746   .g 695 to 1085 394 to 4   tiling clone,   391/394
(99 %)
0 diff
(100 %id)
DB045411 testis .h 1 to 559 2 to 560 Q33H K52E tiling clone, capped   559/559
(100 %)
2 diff
(99.7 %id)
DB025702 testis .i 1 to 567 2 to 568 R63M tiling clone, capped   567/567
(100 %)
1 diff
(99.9 %id)
DB447329 testis .j 1 to 438 1 to 441 Q33H K37R T38G V39G L40G ... tiling clone,   441/441
(100 %)
9 diff
(98.0 %id)
AI970491 pooled germ cell tumors .k-u 1 to 406 582 to 177 exact tiling clone,   406/582
(69 %)
0 diff
(100 %id)
BE464457 pooled germ cell tumors .k-u 39 to 406 544 to 177       368/544
(67 %)
0 diff
(100 %id)
DB460787.
matches multiple genes
testis .l 1 to 382 1 to 382 exact tiling clone, also hits gene kusteebu 382/382
(100 %)
1 diff
(99.8 %id)
BG188838.
matches multiple genes
  P2.a 287 to 628 23 to 366   tiling clone, also hits gene LOC644768, NHEDC1P2 344/370
(92 %)
13 diff
(96.5 %id)
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k-u, .l Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C