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Gene TRIM16LTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
197 supporting clones for gene TRIM16L back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BC128590 PCR rescued clones, C list .a 1 to 1355 1355 to 1 R134K tiling clone, Submitted on the opposite strand 1355/1355
(100 %)
1 diff
(100.0 %id)
AK293428   .b -11 to 1797 1 to 1809 Q208K E228G tiling clone,   1809/1810
(99 %)
6 diff
(99.7 %id)
DA050296   .b -10 to 561 2 to 573   capped   572/572
(100 %)
2 diff
(99.7 %id)
DA178843 amygdala .b -10 to 556 2 to 568   capped   567/567
(100 %)
2 diff
(99.7 %id)
DA518724 brain .b 1 to 332 4 to 335   capped   334/334
(100 %)
3 diff
(99.2 %id)
BE408405 choriocarcinoma, placenta .b 64 to 325 1 to 262   available from MGC,   262/270
(97 %)
2 diff
(99.3 %id)
BU557996 adenocarcinoma, cell line, breast .b 407 to 1156 158 to 917       760/934
(81 %)
35 diff
(96.3 %id)
BF182998.
matches multiple genes
large cell carcinoma, lung .b 415 to 483 1 to 69     also hits gene TRIM16andCDRT1 69/69
(100 %)
0 diff
(100 %id)
BG424431.
matches multiple genes
Kidney, renal cell adenocarcinoma .b 415 to 645 1 to 230     also hits gene TRIM16andCDRT1 230/230
(100 %)
1 diff
(99.6 %id)
CR594025 Placenta Cot 25-normalized .b 416 to 1491 1 to 1076       1076/1076
(100 %)
0 diff
(100 %id)
AL554088 placenta, Placenta Cot 25-normalized .b 416 to 1441 1 to 1010       1010/1051
(96 %)
26 diff
(97.6 %id)
BQ430050 large cell carcinoma, lung .b 449 to 1304 1 to 862       862/904
(95 %)
17 diff
(98.2 %id)
BG117779 adenocarcinoma, cell line, Liver .b 523 to 1291 1 to 759       759/920
(82 %)
21 diff
(97.8 %id)
BX391813 Placenta Cot 25-normalized .b 551 to 1481 941 to 10       932/944
(98 %)
10 diff
(99.0 %id)
BF183268 large cell carcinoma, lung .b 585 to 1391 1 to 797       797/924
(86 %)
22 diff
(97.7 %id)
BM910099.
matches multiple genes
astrocytoma grade IV, cell line, brain .b 607 to 1214 9 to 616     also hits gene TRIM16andCDRT1 608/1120
(54 %)
23 diff
(98.0 %id)
BG750251 eye, normal pigmented retinal epithelium .b 627 to 1433 1 to 807       807/807
(100 %)
6 diff
(99.3 %id)
BE788087 large cell carcinoma, lung .b 689 to 1451 1 to 767       767/780
(98 %)
24 diff
(97.0 %id)
AA346881 heart .b 727 to 992 1 to 266       266/266
(100 %)
10 diff
(96.3 %id)
BE787323 large cell carcinoma, lung .b 841 to 1619 1 to 776       776/962
(80 %)
31 diff
(96.8 %id)
BM928790 large cell carcinoma, lung .b 882 to 1747 1 to 875   tiling clone,   875/993
(88 %)
18 diff
(98.2 %id)
CB115986 Liver .b 886 to 1230 1 to 345       345/345
(100 %)
0 diff
(100 %id)
BQ332462 lung_tumor .b 915 to 1248 1 to 339       339/339
(100 %)
20 diff
(94.2 %id)
DW444016.
matches multiple genes
Liver .b 1044 to 1255 17 to 228     also hits gene TRIM16andCDRT1 212/228
(92 %)
6 diff
(97.4 %id)
BQ332446.
matches multiple genes
lung_tumor .b 1102 to 1204 120 to 20     also hits gene TRIM16andCDRT1 101/120
(84 %)
0 diff
(100 %id)
DA304992 hippocampus .c 1 to 581 2 to 582   tiling clone, capped   581/581
(100 %)
2 diff
(99.7 %id)
BC128591 PCR rescued clones, C list .c 280 to 1782 1 to 1503 R42K tiling clone,   1503/1503
(100 %)
1 diff
(100.0 %id)
BI017869.
matches multiple genes
lung_tumor .c 359 to 552 9 to 204     also hits gene TRIM16andCDRT1 196/204
(96 %)
11 diff
(94.7 %id)
DA353729 substantia nigra .d -10 to 536 2 to 548   tiling clone, capped   547/547
(100 %)
2 diff
(99.7 %id)
DA557572   .d 1 to 548 3 to 550   capped   549/549
(100 %)
3 diff
(99.5 %id)
DB266518 uterus .d 1 to 586 2 to 588   capped   587/587
(100 %)
4 diff
(99.4 %id)
BC127827 PCR rescued clones, C list .d 167 to 1869 1 to 1703 R42K tiling clone,   1703/1703
(100 %)
2 diff
(99.9 %id)
BG436713 large cell carcinoma, lung .e 1 to 501 1 to 504   tiling clone,   504/1125
(44 %)
13 diff
(98.9 %id)
AK316368 esophagus, tumor tissue .e 7 to 1486 1 to 1480 exact tiling clone,   1480/1480
(100 %)
1 diff
(100.0 %id)
DC394483 esophageal, tumor tissue .e 7 to 572 1 to 566       566/566
(100 %)
1 diff
(99.9 %id)
DC345973 tongue, tumor tissue .e 21 to 595 9 to 584       576/576
(100 %)
1 diff
(99.9 %id)
BQ924434 large cell carcinoma, lung .e 31 to 901 25 to 909       885/949
(93 %)
29 diff
(97.0 %id)
BQ935868 large cell carcinoma, lung .e 40 to 991 23 to 980       958/980
(97 %)
17 diff
(98.3 %id)
BQ943654 large cell carcinoma, lung .e 44 to 931 1 to 901       901/928
(97 %)
21 diff
(97.8 %id)
AK301647 esophagus, tumor tissue .f 1 to 1599 1 to 1599 exact tiling clone,   1599/1599
(100 %)
0 diff
(100 %id)
DC393878.
matches multiple genes
esophageal, tumor tissue .f 1 to 486 1 to 487     also hits gene TRIM16andCDRT1 487/487
(100 %)
1 diff
(99.8 %id)
DQ232882   .f 67 to 2048 1 to 1982 exact tiling clone,   1982/1982
(100 %)
0 diff
(100 %id)
NM_001037330.1   .f 67 to 2048 1 to 1982 exact RefSeq,   1982/1982
(100 %)
0 diff
(100 %id)
DC379328 pericardium .f 67 to 636 1 to 570       570/570
(100 %)
1 diff
(99.9 %id)
BP374882 umbilical cord .f 67 to 648 1 to 582       582/582
(100 %)
0 diff
(100 %id)
DC394320 esophageal, tumor tissue .f 79 to 641 1 to 563       563/563
(100 %)
1 diff
(99.9 %id)
DC420007.
matches multiple genes
uterus .f 79 to 641 1 to 563     also hits gene TRIM16andCDRT1 563/563
(100 %)
3 diff
(99.5 %id)
DC328905 corpus callosum .f 81 to 644 1 to 564       564/564
(100 %)
1 diff
(99.9 %id)
DC368226   .f 96 to 632 1 to 538       538/538
(100 %)
2 diff
(99.7 %id)
DC301561   .f 97 to 650 1 to 554       554/554
(100 %)
1 diff
(99.9 %id)
DC301610   .f 97 to 650 1 to 555       555/555
(100 %)
2 diff
(99.7 %id)
BU603660 mixed (pool of 40 RNAs) .f 97 to 692 1 to 597       597/850
(70 %)
13 diff
(98.5 %id)
BP280186   .f 97 to 688 1 to 593       593/593
(100 %)
2 diff
(99.7 %id)
DC367345   .f 97 to 663 1 to 567       567/568
(99 %)
3 diff
(99.5 %id)
DC393976 esophageal, tumor tissue .f 97 to 624 1 to 529       529/529
(100 %)
1 diff
(99.9 %id)
DC394295 esophageal, tumor tissue .f 97 to 660 1 to 565       565/565
(100 %)
2 diff
(99.7 %id)
DC394338 esophageal, tumor tissue .f 97 to 670 1 to 575       575/575
(100 %)
2 diff
(99.7 %id)
DC394455 esophageal, tumor tissue .f 97 to 674 1 to 577       577/577
(100 %)
1 diff
(99.9 %id)
DC414007 trachea .f 97 to 674 1 to 579       579/579
(100 %)
2 diff
(99.7 %id)
DC356460 heart .f 99 to 635 1 to 538       538/538
(100 %)
4 diff
(99.3 %id)
BP252922 Kidney .f 99 to 672 1 to 574       574/574
(100 %)
4 diff
(99.4 %id)
DC359871   .f 99 to 662 1 to 565       565/565
(100 %)
3 diff
(99.5 %id)
CB109738 Liver .f 99 to 520 1 to 422       422/422
(100 %)
2 diff
(99.6 %id)
DC364984.
matches multiple genes
esophagus .f 99 to 450 1 to 352     also hits gene TRIM16andCDRT1 352/352
(100 %)
1 diff
(99.8 %id)
BP332453 renal proximal tubule .f 99 to 680 1 to 582       582/582
(100 %)
3 diff
(99.5 %id)
DC394024 esophageal, tumor tissue .f 99 to 598 1 to 500       500/500
(100 %)
3 diff
(99.4 %id)
DC394117 esophageal, tumor tissue .f 99 to 659 1 to 561       561/561
(100 %)
0 diff
(100 %id)
DC394386 esophageal, tumor tissue .f 99 to 658 1 to 561       561/561
(100 %)
1 diff
(99.9 %id)
DC394499 esophageal, tumor tissue .f 99 to 677 1 to 580       580/580
(100 %)
1 diff
(99.9 %id)
DC412846 liver, tumor tissue .f 99 to 660 1 to 563       563/563
(100 %)
2 diff
(99.7 %id)
DC299270   .f 100 to 561 42 to 503       462/462
(100 %)
1 diff
(99.8 %id)
DC367108   .f 100 to 650 1 to 551       551/551
(100 %)
1 diff
(99.9 %id)
DC420898.
matches multiple genes
uterus .f 100 to 646 1 to 548     also hits gene TRIM16andCDRT1 548/548
(100 %)
4 diff
(99.3 %id)
BE789261 large cell carcinoma, lung .f 101 to 814 1 to 728       728/1045
(69 %)
43 diff
(95.9 %id)
BQ944151 large cell carcinoma, lung .f 104 to 995 1 to 899       899/950
(94 %)
26 diff
(97.3 %id)
DC394232 esophageal, tumor tissue .f 104 to 671 1 to 568       568/568
(100 %)
1 diff
(99.9 %id)
DC414670 trachea .f 104 to 686 1 to 584       584/584
(100 %)
1 diff
(99.9 %id)
DC394112 esophageal, tumor tissue .f 106 to 678 1 to 573       573/573
(100 %)
4 diff
(99.4 %id)
BG748536.
matches multiple genes
eye, normal pigmented retinal epithelium .f 108 to 445 1 to 338     also hits gene TRIM16andCDRT1 338/338
(100 %)
1 diff
(99.8 %id)
DC425545   .f 109 to 675 1 to 567       567/567
(100 %)
2 diff
(99.7 %id)
BQ217372 large cell carcinoma, lung .f 110 to 988 1 to 884       884/889
(99 %)
16 diff
(98.3 %id)
CB128763 Liver .f 111 to 708 1 to 597       597/597
(100 %)
3 diff
(99.5 %id)
DC394098.
matches multiple genes
esophageal, tumor tissue .f 111 to 606 1 to 498     also hits gene TRIM16andCDRT1 498/498
(100 %)
5 diff
(99.0 %id)
DC394364 esophageal, tumor tissue .f 111 to 673 1 to 563       563/563
(100 %)
0 diff
(100 %id)
DC394402 esophageal, tumor tissue .f 111 to 604 1 to 494       494/494
(100 %)
0 diff
(100 %id)
DC394019 esophageal, tumor tissue .f 112 to 624 1 to 514       514/514
(100 %)
1 diff
(99.9 %id)
DC394325 esophageal, tumor tissue .f 112 to 665 1 to 555       555/555
(100 %)
1 diff
(99.9 %id)
DC364973 esophagus .f 113 to 674 1 to 562       562/562
(100 %)
1 diff
(99.9 %id)
CB152952.
matches multiple genes
brain .f 118 to 545 1 to 427     also hits gene TRIM16andCDRT1 427/427
(100 %)
5 diff
(98.9 %id)
DC425484   .f 118 to 657 1 to 540       540/541
(99 %)
2 diff
(99.7 %id)
BG332677.
matches multiple genes
large cell carcinoma, lung .f 119 to 806 1 to 690     also hits gene TRIM16andCDRT1 690/893
(77 %)
19 diff
(97.9 %id)
BQ929003 carcinoma, cell line, Prostate .f 121 to 1064 1 to 948       948/948
(100 %)
16 diff
(98.4 %id)
DC367188   .f 121 to 587 1 to 467       467/467
(100 %)
1 diff
(99.8 %id)
DC393977 esophageal, tumor tissue .f 121 to 685 1 to 565       565/565
(100 %)
0 diff
(100 %id)
AK298836   .f 122 to 1756 1 to 1635 R42K     1635/1635
(100 %)
2 diff
(99.9 %id)
BU180871 large cell carcinoma, lung .f 122 to 932 1 to 820       820/884
(92 %)
18 diff
(98.0 %id)
DC366189   .f 122 to 704 1 to 583       583/584
(99 %)
2 diff
(99.7 %id)
BQ952988 large cell carcinoma, lung .f 124 to 1055 1 to 952       952/959
(99 %)
31 diff
(96.8 %id)
BE273600.
matches multiple genes
Kidney, renal cell adenocarcinoma .f 128 to 469 1 to 342     also hits gene TRIM16andCDRT1 342/563
(60 %)
2 diff
(99.7 %id)
BG331824.
matches multiple genes
large cell carcinoma, lung .f 128 to 445 1 to 316     also hits gene TRIM16andCDRT1 316/316
(100 %)
2 diff
(99.4 %id)
BG034909 adenocarcinoma, cell line, Liver .f 132 to 786 1 to 654       654/945
(69 %)
7 diff
(99.3 %id)
BG332364.
matches multiple genes
large cell carcinoma, lung .f 132 to 283 1 to 151     also hits gene TRIM16andCDRT1 151/151
(100 %)
1 diff
(99.4 %id)
BG496955 lung, mucoepidermoid carcinoma .f 132 to 899 1 to 769       769/798
(96 %)
13 diff
(98.4 %id)
BQ954488 large cell carcinoma, lung .f 132 to 1019 1 to 900       900/903
(99 %)
19 diff
(97.9 %id)
BF382065 brain, primitive neuroectoderm .f 133 to 783 1 to 647       645/960
(67 %)
22 diff
(97.8 %id)
DC394329 esophageal, tumor tissue .f 133 to 697 1 to 565       565/565
(100 %)
1 diff
(99.9 %id)
DC299311   .f 134 to 712 1 to 579       579/579
(100 %)
1 diff
(99.9 %id)
DC340025 thalamus .f 134 to 690 1 to 557       557/557
(100 %)
0 diff
(100 %id)
BP278405   .f 134 to 715 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
DC393857 esophageal, tumor tissue .f 134 to 681 1 to 548       548/548
(100 %)
1 diff
(99.9 %id)
DC394374 esophageal, tumor tissue .f 134 to 699 1 to 566       566/566
(100 %)
0 diff
(100 %id)
BG385448.
matches multiple genes
adenocarcinoma cell line, colon .f 138 to 445 1 to 308     also hits gene TRIM16andCDRT1 308/308
(100 %)
1 diff
(99.7 %id)
BG248747 adenocarcinoma cell line, colon .f 139 to 967 2 to 858       831/950
(87 %)
98 diff
(89.7 %id)
BE786929 large cell carcinoma, lung .f 140 to 806 1 to 659       659/881
(74 %)
13 diff
(98.6 %id)
DC379508 pericardium .f 140 to 681 31 to 572       542/572
(94 %)
6 diff
(99.0 %id)
BU163988 large cell carcinoma, lung .f 141 to 937 12 to 816       804/896
(89 %)
22 diff
(97.6 %id)
BE789096.
matches multiple genes
large cell carcinoma, lung .f 142 to 337 1 to 197     also hits gene TRIM16andCDRT1 197/197
(100 %)
3 diff
(98.5 %id)
BE543674 cervical carcinoma cell line, cervix .f 143 to 799 1 to 659       659/663
(99 %)
7 diff
(99.0 %id)
BG420440.
matches multiple genes
Kidney, renal cell adenocarcinoma .f 143 to 283 1 to 141     also hits gene TRIM16andCDRT1 141/141
(100 %)
0 diff
(100 %id)
BG490267 large cell carcinoma, lung .f 150 to 445 1 to 296       296/296
(100 %)
0 diff
(100 %id)
BG323991.
matches multiple genes
Kidney, renal cell adenocarcinoma .f 153 to 283 1 to 130     also hits gene TRIM16andCDRT1 130/130
(100 %)
1 diff
(99.3 %id)
BQ212924 melanotic melanoma, skin .f 153 to 680 1 to 531       531/1062
(50 %)
9 diff
(99.2 %id)
DB013349 esophageal, tumor tissue .f 158 to 737 2 to 582   capped   581/581
(100 %)
1 diff
(99.9 %id)
BE786984 large cell carcinoma, lung .f 162 to 806 1 to 652       652/924
(70 %)
25 diff
(97.3 %id)
BC146902 Brain, cerebral cortex, PCR rescued clones .f 164 to 1622 1 to 1458 exact     1458/1458
(100 %)
1 diff
(100.0 %id)
BC146907 Brain, cerebral cortex, PCR rescued clones .f 164 to 1622 1 to 1460 exact     1460/1460
(100 %)
1 diff
(100.0 %id)
DC394299 esophageal, tumor tissue .f 166 to 738 1 to 573       573/573
(100 %)
1 diff
(99.9 %id)
DC345876 tongue, tumor tissue .f 173 to 706 1 to 534       534/534
(100 %)
0 diff
(100 %id)
DC394267 esophageal, tumor tissue .f 173 to 732 1 to 560       560/560
(100 %)
0 diff
(100 %id)
BE272706.
matches multiple genes
Kidney, renal cell adenocarcinoma .f 178 to 263 1 to 86     also hits gene TRIM16andCDRT1 86/86
(100 %)
0 diff
(100 %id)
BG490132.
matches multiple genes
large cell carcinoma, lung .f 187 to 283 1 to 97     also hits gene TRIM16andCDRT1 97/97
(100 %)
3 diff
(97.0 %id)
DC413344 liver, tumor tissue .f 192 to 766 1 to 573       573/573
(100 %)
2 diff
(99.7 %id)
BQ641875 eye, normal pigmented retinal epithelium .f 200 to 1134 1 to 946       946/948
(99 %)
13 diff
(98.7 %id)
DC379102 pericardium .f 200 to 770 1 to 571       571/571
(100 %)
1 diff
(99.9 %id)
BQ943994 large cell carcinoma, lung .f 912 to 1815 1 to 905       905/905
(100 %)
21 diff
(97.7 %id)
BQ431174 large cell carcinoma, lung .f 949 to 1760 1 to 817       817/876
(93 %)
11 diff
(98.8 %id)
BG778568 adenocarcinoma, Prostate .f 968 to 1586 1 to 620       620/855
(72 %)
4 diff
(99.6 %id)
BE149510 head_neck .f 990 to 1267 20 to 297       278/307
(90 %)
1 diff
(99.7 %id)
BI094411 cervix .f 1004 to 1584 1 to 581       581/805
(72 %)
2 diff
(99.8 %id)
BX328032 Placenta Cot 25-normalized .f 1007 to 1959 1 to 969       969/969
(100 %)
41 diff
(95.8 %id)
AL576906 placenta, Placenta Cot 25-normalized .f 1010 to 1612 1030 to 426   AAA   605/1054
(57 %)
45 diff
(95.8 %id)
BM790321 Ascites, stomach .f 1149 to 1665 1 to 516       516/516
(100 %)
3 diff
(99.5 %id)
BE171880 head_neck .f 1203 to 1377 12 to 184       173/188
(92 %)
6 diff
(96.9 %id)
AI745151 ovary, tumor, 5 pooled (see description) .f 1542 to 2048 507 to 1       507/507
(100 %)
0 diff
(100 %id)
BE301111 Kidney, renal cell adenocarcinoma .f 1586 to 2045 465 to 6       460/465
(98 %)
0 diff
(100 %id)
CA437734 lung, Metastatic Chondrosarcoma .f 1587 to 2039 1 to 453     Submitted on the opposite strand 453/460
(98 %)
2 diff
(99.6 %id)
BQ669526 epidermoid carcinoma, cell line, salivary gland .f 1606 to 2048 1 to 443   AAA Possibly primed on the genome, locally A rich (25/25 A in genome downstream of last aligned base) 443/443
(100 %)
1 diff
(99.8 %id)
AI745144 ovary, tumor, 5 pooled (see description) .f 1624 to 2048 425 to 1       425/425
(100 %)
0 diff
(100 %id)
AA229163.
matches multiple genes
  .f 1715 to 1970 1 to 256     also hits gene TRIM16andCDRT1 256/256
(100 %)
13 diff
(95.0 %id)
BP425899 small intestine .f 1800 to 1967 20 to 187     Submitted on the opposite strand 168/187
(89 %)
6 diff
(96.8 %id)
AW388081.
matches multiple genes
stomach .f 1824 to 1985 10 to 167     also hits gene TRIM16andCDRT1 158/167
(94 %)
6 diff
(96.5 %id)
AI719867.
matches multiple genes
aorta .f 1879 to 2033 165 to 10     also hits gene TRIM16andCDRT1 156/165
(94 %)
0 diff
(100 %id)
CB109494.
matches multiple genes
Liver .f 1891 to 2042 1 to 152     also hits gene TRIM16andCDRT1 152/168
(90 %)
1 diff
(99.5 %id)
EC580843.
matches multiple genes
Prostate .f 1940 to 2026 1 to 87     also hits gene TRIM16andCDRT1 87/93
(93 %)
2 diff
(97.9 %id)
BM907734 large cell carcinoma, lung .f 1948 to 2041 1 to 94   AAA Possibly primed on the genome, locally A rich (25/25 A in genome downstream of last aligned base) 94/94
(100 %)
0 diff
(100 %id)
DC397848 testis .g 1 to 541 1 to 542   tiling clone,   542/542
(100 %)
2 diff
(99.7 %id)
TI_149303680   .g 254 to 1079 894 to 83   AAA Possibly primed on the genome, locally A rich (25/25 A in genome downstream of last aligned base) 812/928
(87 %)
20 diff
(97.9 %id)
BM981643 lung, Primary Lung Cystic Fibrosis EpithelialCells .g 290 to 1079 799 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (25/25 A in genome downstream of last aligned base) 781/782
(99 %)
10 diff
(98.8 %id)
AK095390 tongue, tumor tissue .h-u 1 to 3131 2 to 3132 exact tiling clone, available from FLJ,   3132/3132
(100 %)
7 diff
(99.8 %id)
DA445093 tongue, tumor tissue .h-u 1 to 584 2 to 585   capped   584/584
(100 %)
0 diff
(100 %id)
DA400298 thalamus .h-u 179 to 727 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
DN995245 breast cancer, Mammary gland (cancer tissue) .h-u 372 to 1015 9 to 652       644/652
(98 %)
1 diff
(99.9 %id)
AK057747 cerebellum .h-u 961 to 3131 1 to 2171   tiling clone, available from FLJ,   2171/2171
(100 %)
15 diff
(99.4 %id)
DB313926 tongue, tumor tissue .h-u 2603 to 3131 529 to 1       529/529
(100 %)
6 diff
(98.9 %id)
AI476375.
matches multiple genes
colon, moderately-differentiated adenocarcinoma .h-u 2617 to 2746 130 to 1   tiling clone, also hits gene korveebu 130/130
(100 %)
0 diff
(100 %id)
AK301639 esophagus, tumor tissue .i 1 to 994 6 to 999 exact tiling clone,   999/999
(100 %)
0 diff
(100 %id)
DC393811 esophageal, tumor tissue .i 1 to 565 6 to 571       571/571
(100 %)
1 diff
(99.9 %id)
DB014168 esophageal, tumor tissue .j 1 to 558 2 to 560 exact tiling clone, capped   559/559
(100 %)
1 diff
(99.9 %id)
CB109285 Liver .k 1 to 577 1 to 576 R42K tiling clone,   576/576
(100 %)
2 diff
(99.7 %id)
DA178154 amygdala .l 1 to 483 5 to 487 exact tiling clone, capped   486/486
(100 %)
0 diff
(100 %id)
DA508212 brain .m 1 to 565 5 to 570 exact capped   569/577
(98 %)
7 diff
(98.8 %id)
DA493384 brain .m 1 to 561 3 to 563 exact tiling clone, capped   562/562
(100 %)
3 diff
(99.5 %id)
DA782291 brain .m 1 to 562 3 to 564 N82D capped   563/563
(100 %)
3 diff
(99.5 %id)
DA534217 brain .m 5 to 580 2 to 577 exact tiling clone, capped   576/576
(100 %)
0 diff
(100 %id)
BQ226977 large cell carcinoma, lung .m 576 to 1162 1 to 587   tiling clone,   587/868
(67 %)
8 diff
(99.1 %id)
DA376356 thalamus .n-u 1 to 566 2 to 567   tiling clone, capped   566/566
(100 %)
1 diff
(99.9 %id)
BG121532 adenocarcinoma, cell line, Liver .o 1 to 816 1 to 800 S4K L5S C6V P7S P8S ...     800/938
(85 %)
47 diff
(95.0 %id)
BC106034 Liver, adenocarcinoma .o 2 to 814 1 to 813 R21P tiling clone, AAA   813/813
(100 %)
2 diff
(99.8 %id)
BX283848 brain, neuroblastoma, cell line .p 1 to 495 1 to 495 R23P N53I     495/495
(100 %)
3 diff
(99.4 %id)
BM013394 brain, neuroblastoma, cell line .p 1 to 783 1 to 782 R23P N53I tiling clone,   782/788
(99 %)
12 diff
(98.5 %id)
TI_59380212   .p 1 to 783 102 to 883 R23P N53I     782/933
(83 %)
12 diff
(98.8 %id)
DC397265 testis .q 1 to 560 1 to 560 exact tiling clone,   560/560
(100 %)
0 diff
(100 %id)
CV372957.
matches multiple genes
lung_tumor .r-u 1 to 321 1 to 332   tiling clone, also hits gene zuloy 332/397
(83 %)
25 diff
(93.8 %id)
CV373044.
matches multiple genes
lung_tumor .r-u 1 to 361 15 to 367   tiling clone, also hits gene zuloy 353/367
(96 %)
6 diff
(98.4 %id)
BQ332069 lung_tumor .r-u 28 to 552 1 to 536 M3L T8D R9P T10D Q11I ... tiling clone,   536/536
(100 %)
36 diff
(93.3 %id)
DB017708 esophageal, tumor tissue .s 1 to 514 4 to 517 exact tiling clone, capped   516/516
(100 %)
1 diff
(99.9 %id)
BQ340788 nervous_normal Gene TRIM16L, variant not shown         This clone was ignored    
DC366822   Gene TRIM16L, variant not shown         Suspected internal deletion, this clone was ignored    
AL080124 hippocampus Gene TRIM16L, variant not shown       available from DKFZ, AAA Suspected internal deletion, this clone was ignored    
DB311851 thalamus Gene TRIM16L, variant not shown         This clone was ignored    
DA392866 thalamus Gene TRIM16L, variant not shown       capped This clone was ignored    
N52796 multiple sclerosis lesions Gene TRIM16L, variant not shown       fully sequenced, Suspected internal deletion, this clone was ignored    
N57618 multiple sclerosis lesions Gene TRIM16L, variant not shown       fully sequenced, Suspected internal deletion, this clone was ignored    
AA826857 epithelium (cell line), Prostate Gene TRIM16L, variant not shown         This clone was ignored    
AI651167 Kidney Gene TRIM16L, variant not shown         This clone was ignored    
BC021296 Placenta, choriocarcinoma Gene TRIM16L, variant not shown       available from MGC, AAA This clone was ignored    
BM807219 duodenal adenocarcinoma, cell line, small intestine Gene TRIM16L, variant not shown              
BM924135 pooled colon, kidney, stomach Gene TRIM16L, variant not shown         This clone was ignored    
BU181166 large cell carcinoma, lung Gene TRIM16L, variant not shown         This clone was ignored    
DA959982 Spleen Gene TRIM16L, variant not shown       capped This clone was ignored    
DB334170 Spleen Gene TRIM16L, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h-u, .i, .j, .k, .l, .m, .n-u, .o, .p, .q, .r-u, .s Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C