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Gene B3GNTL1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
125 supporting clones for gene B3GNTL1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA673531   .a 1 to 556 2 to 557   tiling clone, capped   556/556
(100 %)
1 diff
(99.9 %id)
BU540702 large cell carcinoma, lung .a 7 to 835 1 to 835   tiling clone,   835/903
(92 %)
10 diff
(98.9 %id)
BM709079 eye, optic nerve .a 810 to 1288 1 to 499   tiling clone,   499/499
(100 %)
13 diff
(97.4 %id)
AY634364   .b 1 to 1383 1 to 1383 exact tiling clone,   1383/1383
(100 %)
0 diff
(100 %id)
NM_001009905.1   .b 1 to 1383 1 to 1383 exact RefSeq,   1383/1383
(100 %)
0 diff
(100 %id)
AY304503   .b 3 to 1374 1 to 1372 S17R     1372/1372
(100 %)
5 diff
(99.7 %id)
AA134647   .b 22 to 357 1 to 339       339/365
(92 %)
14 diff
(96.2 %id)
BU845472 ovary, teratocarcinoma, cell line .b 22 to 876 1 to 858       858/941
(91 %)
10 diff
(99.0 %id)
BU849242 ovary, teratocarcinoma, cell line .b 22 to 803 1 to 783       783/913
(85 %)
14 diff
(98.5 %id)
BU931205 ovary, teratocarcinoma, cell line .b 22 to 843 1 to 826       826/826
(100 %)
6 diff
(99.3 %id)
CX869861 embryonic stem .b 23 to 773 1 to 751       751/751
(100 %)
0 diff
(100 %id)
Z45968 brain, total brain .b 40 to 370 1 to 330       330/330
(100 %)
3 diff
(99.1 %id)
R15231 whole brain .b 41 to 421 1 to 382       382/461
(82 %)
12 diff
(97.4 %id)
CN289794 embryonic stem cells, DMSO-treated H9 cellline .b 43 to 170 1 to 128       128/128
(100 %)
1 diff
(99.3 %id)
H29786 whole brain .b 52 to 491 1 to 449       449/468
(95 %)
17 diff
(96.4 %id)
CX164126 human embryonic stem cells differentiated toan early endodermal cell type .b 53 to 871 1 to 819       819/819
(100 %)
0 diff
(100 %id)
BQ422690 large cell carcinoma, lung .b 54 to 685 1 to 640       640/1024
(62 %)
17 diff
(98.4 %id)
DR155900 human embryonic stem cells differentiated toan early endodermal cell type .b 54 to 767 1 to 714       714/714
(100 %)
0 diff
(100 %id)
BG258799 embryonal carcinoma, cell line, testis .b 189 to 945 1 to 746       748/925
(80 %)
20 diff
(97.9 %id)
BC019623 Prostate, adenocarcinoma. .b 207 to 1378 1 to 1172   available from MGC, AAA   1172/1172
(100 %)
0 diff
(100 %id)
BG285392 adenocarcinoma, cell line, Prostate .b 208 to 916 1 to 703   available from MGC,   703/704
(99 %)
7 diff
(99.1 %id)
AA311176   .b 215 to 676 1 to 462       462/462
(100 %)
5 diff
(99.0 %id)
BM009863 amelanotic melanoma, cell line, skin .b 219 to 967 1 to 751       751/752
(99 %)
9 diff
(98.9 %id)
TI_59384641   .b 220 to 967 63 to 812       750/751
(99 %)
8 diff
(99.0 %id)
BG830862 epithelioid carcinoma cell line, Pancreas .b 230 to 988 1 to 757   available from MGC,   757/757
(100 %)
6 diff
(99.3 %id)
BC041588 Pancreas, epithelioid carcinoma .b 231 to 1378 1 to 1148   available from MGC, AAA   1148/1148
(100 %)
1 diff
(100.0 %id)
BM708547 eye, RPE and Choroid .b 243 to 660 1 to 418       418/418
(100 %)
1 diff
(99.8 %id)
CX871975 embryonic stem .b 272 to 843 1 to 572       572/572
(100 %)
0 diff
(100 %id)
DB071243 testis .b 352 to 849 2 to 499   capped   498/498
(100 %)
0 diff
(100 %id)
BM542160 melanotic melanoma, skin .b 364 to 1250 1 to 891       891/964
(92 %)
17 diff
(98.3 %id)
AA338915 brain .b 399 to 574 1 to 176       176/176
(100 %)
0 diff
(100 %id)
AA079433   .b 459 to 841 1 to 392       390/398
(97 %)
13 diff
(96.8 %id)
BE874863 large cell carcinoma, undifferentiated, lung .b 487 to 1189 1 to 704       704/1071
(65 %)
6 diff
(99.5 %id)
BI253904 cervical carcinoma cell line, cervix .b 514 to 795 1 to 282       282/282
(100 %)
0 diff
(100 %id)
BU607282 Human Lung Epithelial cells, lung .b 653 to 1378 743 to 19   AAA   725/725
(100 %)
3 diff
(99.6 %id)
CA425958 cell lines, Chondrosarcoma .b 653 to 1378 744 to 19   AAA   726/726
(100 %)
2 diff
(99.8 %id)
BP430030   .b 712 to 1092 1 to 381       381/381
(100 %)
3 diff
(99.3 %id)
BP429569   .b 740 to 1152 8 to 420       413/420
(98 %)
6 diff
(98.6 %id)
TI_157602571   .b 743 to 1378 744 to 109   AAA   636/936
(67 %)
25 diff
(97.4 %id)
AW468201 myeloid cells, 18 pooled CML cases, BCR/ABLrearrangement positive, includes both chronic phase andmyeloid blast crisis, whole blood .b 744 to 1378 636 to 1       636/636
(100 %)
21 diff
(96.7 %id)
BI257936 cervical carcinoma cell line, cervix .b 767 to 1025 1 to 250       250/272
(91 %)
24 diff
(91.2 %id)
BU626138 cell lines, Enchondroma .b 803 to 1378 594 to 19   AAA   576/576
(100 %)
2 diff
(99.7 %id)
BF108942 pooled .b 831 to 1383 554 to 3       552/554
(99 %)
8 diff
(98.6 %id)
AA534229 adrenal adenoma, adrenal gland .b 874 to 1380 506 to 1       506/620
(81 %)
3 diff
(99.6 %id)
AW015058   .b 888 to 1378 508 to 18   AAA   491/491
(100 %)
3 diff
(99.4 %id)
AA079400   .b 962 to 1381 425 to 1       425/425
(100 %)
7 diff
(98.4 %id)
BM709913 eye, Retina Foveal and Macular .b 967 to 1373 1 to 407   fully sequenced,   407/407
(100 %)
0 diff
(100 %id)
AI347205 colon, colon tumor, RER+ .b 984 to 1377 394 to 1       394/394
(100 %)
2 diff
(99.5 %id)
CF529472 placenta .b 999 to 1378 398 to 19   AAA   380/380
(100 %)
0 diff
(100 %id)
AI375397   .b 1009 to 1378 386 to 17   AAA   370/370
(100 %)
1 diff
(99.8 %id)
AA845994 Spleen .b 1021 to 1382 362 to 1       362/362
(100 %)
0 diff
(100 %id)
AI091322 pooled .b 1038 to 1383 346 to 1       346/390
(88 %)
0 diff
(100 %id)
BC065543 Uterus, leiomyosarcoma .b 1043 to 1378 1 to 336   available from MGC, AAA   336/336
(100 %)
1 diff
(99.8 %id)
BQ434266 leiomyosarcoma, uterus .b 1046 to 1378 1 to 333   available from MGC, AAA   333/333
(100 %)
3 diff
(99.1 %id)
AI240973 Kidney .b 1072 to 1383 314 to 3       312/314
(99 %)
0 diff
(100 %id)
BU736682 eye, Retina Foveal and Macular .b 1094 to 1378 303 to 19   fully sequenced, AAA   285/285
(100 %)
1 diff
(99.7 %id)
Z41581 brain, total brain .b 1113 to 1378 266 to 1       266/266
(100 %)
0 diff
(100 %id)
BU730842 eye, RPE and Choroid .b 1188 to 1378 209 to 19   AAA   191/195
(97 %)
1 diff
(99.5 %id)
F08575 brain, total brain .c 1 to 271 1 to 271   tiling clone,   271/271
(100 %)
1 diff
(99.7 %id)
BX108375 whole brain .c 1030 to 1496 483 to 15   tiling clone, AAA   469/469
(100 %)
3 diff
(99.4 %id)
F04786 brain, total brain .c 1256 to 1485 230 to 1       230/230
(100 %)
0 diff
(100 %id)
CD050511 embryonic trophoblasts, made from WA01 stemcells .d 1 to 870 17 to 893 S9F R28C V30A tiling clone,   877/903
(97 %)
15 diff
(98.4 %id)
TI_57231514   .e 1 to 653 35 to 687   tiling clone,   653/752
(86 %)
18 diff
(97.7 %id)
BC035891 Blood, adult leukocytes .e 2 to 1771 1 to 1770 P83L tiling clone, available from MGC, AAA   1770/1770
(100 %)
4 diff
(99.8 %id)
BI906072 leukocyte .e 2 to 653 1 to 652   available from MGC,   652/717
(90 %)
23 diff
(96.8 %id)
DA373126 thalamus .e 18 to 625 2 to 609   tiling clone, capped   608/608
(100 %)
3 diff
(99.6 %id)
BM451258 eye, retinoblastoma .e 1559 to 2425 6 to 879   tiling clone,   874/920
(95 %)
21 diff
(97.8 %id)
BI057347 placenta_normal .e 1637 to 2080 1 to 442       442/442
(100 %)
4 diff
(99.1 %id)
BI057351 placenta_normal .e 1660 to 2089 8 to 437       430/437
(98 %)
6 diff
(98.7 %id)
AA428388   .e 1781 to 2226 1 to 445   tiling clone,   445/445
(100 %)
3 diff
(99.4 %id)
CN282135 embryonic stem cells, cell lines H1, H7, andH9 .e 2365 to 2764 13 to 410   tiling clone,   398/410
(97 %)
6 diff
(98.6 %id)
H14596 whole brain .e 2374 to 2738 1 to 375   tiling clone, Submitted on the opposite strand 375/384
(97 %)
6 diff
(98.5 %id)
AI033806 liver and spleen .e 2376 to 2711 1 to 336     Submitted on the opposite strand 336/336
(100 %)
9 diff
(97.4 %id)
AI076412 liver and spleen .e 2376 to 2759 1 to 384   tiling clone, Submitted on the opposite strand 384/384
(100 %)
4 diff
(99.0 %id)
G43509   .e 2393 to 2542 1 to 150       150/150
(100 %)
0 diff
(100 %id)
AI904378 breast .e 2421 to 2695 1 to 275       275/275
(100 %)
0 diff
(100 %id)
BU623325 cell lines, Chondrosarcoma .e 2757 to 3410 672 to 19   tiling clone, AAA   654/654
(100 %)
1 diff
(99.9 %id)
AA001519 eye, retina .e 2861 to 3121 1 to 263       263/293
(89 %)
4 diff
(98.7 %id)
AA428168   .e 3052 to 3411 364 to 5       360/364
(98 %)
0 diff
(100 %id)
AA764879 germinal center B cell .e 3111 to 3416 323 to 18   AAA   306/306
(100 %)
2 diff
(99.4 %id)
AA338914 brain .e 3205 to 3416 212 to 1   tiling clone,   212/212
(100 %)
0 diff
(100 %id)
DN995997 breast cancer, Mammary gland (cancer tissue) .f 1 to 634 1 to 637   tiling clone,   637/637
(100 %)
9 diff
(98.6 %id)
BF847908 lung_normal .f 474 to 784 1 to 311   tiling clone,   311/311
(100 %)
0 diff
(100 %id)
DB074238 testis .g 1 to 539 2 to 540   tiling clone, capped   539/539
(100 %)
0 diff
(100 %id)
BG674237 skin .g 1875 to 2745 1 to 863   tiling clone,   863/866
(99 %)
20 diff
(97.7 %id)
DB340422 testis .g 2669 to 3228 560 to 1   tiling clone,   560/560
(100 %)
0 diff
(100 %id)
BU500652   .h 1 to 842 4 to 849 E203R L204T tiling clone,   849/896
(94 %)
15 diff
(98.4 %id)
DA149185 amygdala .i 1 to 560 2 to 565   tiling clone, capped   564/564
(100 %)
5 diff
(99.2 %id)
DA392995 thalamus .i 47 to 637 2 to 592   tiling clone, capped   591/591
(100 %)
0 diff
(100 %id)
DA530005 brain .i 94 to 548 2 to 456   capped   455/460
(98 %)
2 diff
(99.6 %id)
AK054757 cerebellum .i 257 to 2702 1 to 2446 exact tiling clone, available from FLJ,   2446/2446
(100 %)
2 diff
(100.0 %id)
DA055362 cerebellum .i 258 to 822 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA405237 thalamus .i 761 to 1316 2 to 558   tiling clone, capped   557/557
(100 %)
2 diff
(99.7 %id)
DB296526 cerebellum .i 2153 to 2702 550 to 1       550/550
(100 %)
1 diff
(99.9 %id)
AW070475 pooled .j 1 to 423 425 to 3 exact tiling clone,   423/425
(99 %)
1 diff
(99.8 %id)
Z44449 brain, total brain .k 1 to 310 1 to 309   tiling clone,   309/309
(100 %)
3 diff
(99.1 %id)
H29341 whole brain .k 1 to 456 1 to 462 E65R P66A L67S P68A P69T ... tiling clone, to resequence,   462/467
(98 %)
19 diff
(96.0 %id)
R17825 whole brain .k 2 to 412 1 to 410   tiling clone,   410/415
(98 %)
13 diff
(96.9 %id)
R18068 whole brain .k 28 to 318 10 to 303       294/339
(86 %)
12 diff
(96.5 %id)
H29258 whole brain .k 1307 to 1789 498 to 11   tiling clone, to resequence, AAA   488/492
(99 %)
23 diff
(95.4 %id)
R43029 whole brain .k 1342 to 1789 462 to 12   tiling clone, AAA   451/451
(100 %)
14 diff
(96.9 %id)
Z40375 brain, total brain .k 1526 to 1789 263 to 1   tiling clone,   263/263
(100 %)
2 diff
(99.3 %id)
DA219956 brain .l 1 to 562 2 to 563   tiling clone, capped   562/562
(100 %)
0 diff
(100 %id)
AK126018 testis .l 159 to 3482 1 to 3324 exact tiling clone, available from FLJ,   3324/3324
(100 %)
6 diff
(99.9 %id)
DB081698 testis .l 160 to 661 2 to 503   capped   502/502
(100 %)
2 diff
(99.7 %id)
DR002359 fetal brain .l 482 to 1197 7 to 721       715/721
(99 %)
6 diff
(99.2 %id)
BC110528 PCR rescued clones .l 579 to 2975 1 to 2397 exact     2397/2397
(100 %)
3 diff
(99.9 %id)
BC110529 PCR rescued clones .l 579 to 2975 1 to 2397 exact tiling clone,   2397/2397
(100 %)
0 diff
(100 %id)
CN288161 embryonic stem cells, cell lines H1, H7, andH9 .l 793 to 1428 1 to 636       636/636
(100 %)
1 diff
(99.9 %id)
DA106908 cerebellum .l 1084 to 1671 2 to 589   capped   588/588
(100 %)
0 diff
(100 %id)
DA110973 cerebellum .l 1232 to 1811 2 to 581   capped   580/580
(100 %)
1 diff
(99.9 %id)
R88956 brain .l 1336 to 1689 1 to 358       358/362
(98 %)
6 diff
(98.4 %id)
DA840823 placenta .l 1413 to 1968 2 to 557   capped   556/556
(100 %)
1 diff
(99.9 %id)
F13312 brain, total brain .l 1739 to 2052 1 to 314       314/314
(100 %)
0 diff
(100 %id)
U79265 brain .l 1739 to 3482 1 to 1744   tiling clone, AAA   1744/1744
(100 %)
0 diff
(100 %id)
BI020674 marrow .l 1954 to 2219 1 to 266       266/266
(100 %)
0 diff
(100 %id)
BI018189 marrow .l 1982 to 2240 1 to 257       257/294
(87 %)
15 diff
(94.9 %id)
DA271105 caudate nucleus .l 2152 to 2723 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
BQ708509 Spleen .l 2342 to 3165 1 to 835       835/1001
(83 %)
39 diff
(96.2 %id)
AL042583 testis .l 2622 to 3278 1 to 663       663/671
(98 %)
14 diff
(98.0 %id)
DB340865 testis .l 2930 to 3482 553 to 1       553/553
(100 %)
0 diff
(100 %id)
BF955987 nervous_normal .l 2970 to 3456 11 to 497       487/497
(97 %)
7 diff
(98.6 %id)
AA613445 colon, colon tumor RER+ .l 3019 to 3481 463 to 1       463/463
(100 %)
1 diff
(99.8 %id)
BF174014 blood .l 3048 to 3180 1 to 133       133/133
(100 %)
1 diff
(99.3 %id)
AA621585   .l 3050 to 3419 370 to 1       370/370
(100 %)
0 diff
(100 %id)
AI859793 serous papillary carcinoma, high grade, 2pooled tumors, uterus .l 3111 to 3492 405 to 23   tiling clone, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 383/407
(94 %)
2 diff
(99.6 %id)
F10911 brain, total brain .l 3182 to 3482 300 to 1       300/300
(100 %)
1 diff
(99.7 %id)
BI832013 brain, medulla .m 1 to 776 1 to 773 C26G R47G P48H F50S V51S ... tiling clone,   773/773
(100 %)
9 diff
(98.9 %id)
TI_57173496   .m 1 to 776 1 to 773 C26G R47G P48H F50S V51S ...     773/773
(100 %)
9 diff
(98.9 %id)
TI_149300748   .m 694 to 1545 919 to 78   tiling clone, AAA   842/960
(87 %)
14 diff
(98.6 %id)
BM976676 lung, Primary Lung Cystic Fibrosis EpithelialCells .m 819 to 1545 744 to 19   tiling clone, AAA   726/726
(100 %)
1 diff
(99.9 %id)
TI_151745833   .m 828 to 1551 819 to 104   tiling clone, AAA   716/921
(77 %)
18 diff
(98.1 %id)
AA017193 eye, retina .m 995 to 1256 1 to 265       265/305
(86 %)
6 diff
(98.1 %id)
AW173210 pooled .n 1 to 471 471 to 1 C17G H19N V65M L80P tiling clone,   471/471
(100 %)
8 diff
(98.4 %id)
BM193543 leukopheresis .o-u 1 to 265 10 to 274 V15A S29L P32S G36R tiling clone,   265/274
(96 %)
6 diff
(97.9 %id)
DB297377 cerebellum Gene B3GNTL1, variant not shown         This clone was ignored    
DA067997 cerebellum Gene B3GNTL1, variant not shown       capped This clone was ignored    
R15934 whole brain Gene B3GNTL1, variant not shown       AAA This clone was ignored    
R15935 whole brain Gene B3GNTL1, variant not shown         This clone was ignored    
W67572 heart Gene B3GNTL1, variant not shown         This clone was ignored    
W67622 heart Gene B3GNTL1, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI